API Index

Procedure	Kind	Module	File	Line	Visibility
CDataPoint__delete	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	253	private
CDataPoint__new2	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	243	private
CDataSet__AddDataPoint	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	248	private
CDataSet__SetDashedLine	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	223	private
CDataSet__SetDatasetColor	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	233	private
CDataSet__SetDrawLine	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	208	private
CDataSet__SetDrawMarker	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	203	private
CDataSet__SetFillArea	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	228	private
CDataSet__SetLineWidth	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	218	private
CDataSet__SetMarkerSize	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	213	private
CDataSet__delete	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	238	private
CDataSet__new	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	189	private
CDataSet_addpoint	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	259	private
CPlot2D__AddDataSet	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	164	private
CPlot2D__OutputPostScriptPlot	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	179	private
CPlot2D__SetDrawLegend	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	154	private
CPlot2D__SetDrawXAxisGridLines	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	198	private
CPlot2D__SetDrawYAxisGridLines	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	193	private
CPlot2D__SetFlipY	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	159	private
CPlot2D__SetXAxisSize	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	144	private
CPlot2D__SetXAxisTitle	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	169	private
CPlot2D__SetYAxisSize	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	149	private
CPlot2D__SetYAxisTitle	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	174	private
CPlot2D__delete	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	184	private
CPlot2D__new	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	139	private
C_CDataPoint__delete	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	122	private
C_CDataPoint__new2	function	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	117	private
C_CDataSet__AddDataPoint	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	126	private
C_CDataSet__SetDashedLine	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	102	private
C_CDataSet__SetDatasetColor	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	112	private
C_CDataSet__SetDrawLine	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	87	private
C_CDataSet__SetDrawMarker	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	82	private
C_CDataSet__SetFillArea	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	107	private
C_CDataSet__SetLineWidth	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	97	private
C_CDataSet__SetMarkerSize	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	92	private
C_CDataSet__delete	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	131	private
C_CDataSet__new	function	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	68	private
C_CPlot2D__AddDataSet	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	44	private
C_CPlot2D__OutputPostScriptPlot	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	59	private
C_CPlot2D__SetDrawLegend	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	34	private
C_CPlot2D__SetDrawXAxisGridLines	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	72	private
C_CPlot2D__SetDrawYAxisGridLines	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	77	private
C_CPlot2D__SetFlipY	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	39	private
C_CPlot2D__SetXAxisSize	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	24	private
C_CPlot2D__SetXAxisTitle	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	49	private
C_CPlot2D__SetYAxisSize	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	29	private
C_CPlot2D__SetYAxisTitle	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	54	private
C_CPlot2D__delete	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	64	private
C_CPlot2D__new	function	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	19	private
plot2D	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	268	private
test_CPlot2D	subroutine	CPlot2D_wrapper_module	extlibs/CPlot2D/simple_CPlot2D_wrapper.f90	335	private
curl_easy_cleanup	subroutine	curl_easy	extlibs/curl/src/curl_easy.f90	1022	public
curl_easy_escape_	function	curl_easy	extlibs/curl/src/curl_easy.f90	759	private
curl_easy_getinfo_c_double	function	curl_easy	extlibs/curl/src/curl_easy.f90	769	private
curl_easy_getinfo_c_long	function	curl_easy	extlibs/curl/src/curl_easy.f90	779	private
curl_easy_getinfo_c_ptr	function	curl_easy	extlibs/curl/src/curl_easy.f90	789	private
curl_easy_init	function	curl_easy	extlibs/curl/src/curl_easy.f90	799	public
curl_easy_pause	function	curl_easy	extlibs/curl/src/curl_easy.f90	806	public
curl_easy_perform	function	curl_easy	extlibs/curl/src/curl_easy.f90	815	public
curl_easy_setopt_c_char	function	curl_easy	extlibs/curl/src/curl_easy.f90	823	private
curl_easy_setopt_c_funptr	function	curl_easy	extlibs/curl/src/curl_easy.f90	853	private
curl_easy_setopt_c_long	function	curl_easy	extlibs/curl/src/curl_easy.f90	833	private
curl_easy_setopt_c_ptr	function	curl_easy	extlibs/curl/src/curl_easy.f90	843	private
curl_easy_strerror_	function	curl_easy	extlibs/curl/src/curl_easy.f90	863	private
curl_easy_unescape_	function	curl_easy	extlibs/curl/src/curl_easy.f90	871	private
curl_escape_	function	curl_easy	extlibs/curl/src/curl_easy.f90	882	private
curl_free	subroutine	curl_easy	extlibs/curl/src/curl_easy.f90	1029	public
curl_global_cleanup	subroutine	curl_easy	extlibs/curl/src/curl_easy.f90	1036	public
curl_global_init_	function	curl_easy	extlibs/curl/src/curl_easy.f90	891	private
curl_mime_addpart	function	curl_easy	extlibs/curl/src/curl_easy.f90	899	public
curl_mime_data	function	curl_easy	extlibs/curl/src/curl_easy.f90	907	public
curl_mime_encoder_	function	curl_easy	extlibs/curl/src/curl_easy.f90	917	private
curl_mime_filedata_	function	curl_easy	extlibs/curl/src/curl_easy.f90	926	private
curl_mime_filename_	function	curl_easy	extlibs/curl/src/curl_easy.f90	935	private
curl_mime_free	subroutine	curl_easy	extlibs/curl/src/curl_easy.f90	1040	public
curl_mime_headers	function	curl_easy	extlibs/curl/src/curl_easy.f90	944	public
curl_mime_init	function	curl_easy	extlibs/curl/src/curl_easy.f90	954	public
curl_mime_name_	function	curl_easy	extlibs/curl/src/curl_easy.f90	962	private
curl_mime_subparts	function	curl_easy	extlibs/curl/src/curl_easy.f90	971	public
curl_mime_type_	function	curl_easy	extlibs/curl/src/curl_easy.f90	980	private
curl_slist_append_	function	curl_easy	extlibs/curl/src/curl_easy.f90	989	private
curl_slist_free_all	subroutine	curl_easy	extlibs/curl/src/curl_easy.f90	1047	public
curl_unescape_	function	curl_easy	extlibs/curl/src/curl_easy.f90	998	private
curl_version_	function	curl_easy	extlibs/curl/src/curl_easy.f90	1007	private
curl_version_info_	function	curl_easy	extlibs/curl/src/curl_easy.f90	1014	private
curl_version_now	function	curl_easy	extlibs/curl/src/curl_easy.f90	1056	public
curl_multi_add_handle	function	curl_multi	extlibs/curl/src/curl_multi.f90	76	public
curl_multi_cleanup	function	curl_multi	extlibs/curl/src/curl_multi.f90	85	public
curl_multi_info_read	function	curl_multi	extlibs/curl/src/curl_multi.f90	93	public
curl_multi_init	function	curl_multi	extlibs/curl/src/curl_multi.f90	102	public
curl_multi_perform	function	curl_multi	extlibs/curl/src/curl_multi.f90	109	public
curl_multi_poll	function	curl_multi	extlibs/curl/src/curl_multi.f90	118	public
curl_multi_remove_handle	function	curl_multi	extlibs/curl/src/curl_multi.f90	130	public
curl_multi_strerror	function	curl_multi	extlibs/curl/src/curl_multi.f90	165	public
curl_multi_strerror_	function	curl_multi	extlibs/curl/src/curl_multi.f90	139	private
curl_multi_timeout	function	curl_multi	extlibs/curl/src/curl_multi.f90	147	public
curl_multi_wakeup	function	curl_multi	extlibs/curl/src/curl_multi.f90	156	public
curl_url	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	86	public
curl_url_cleanup	subroutine	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	131	public
curl_url_dup	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	93	public
curl_url_get	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	139	public
curl_url_get_	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	101	private
curl_url_set	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	157	public
curl_url_set_	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	112	private
curl_url_strerror	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	172	public
curl_url_strerror_	function	curl_urlapi	extlibs/curl/src/curl_urlapi.f90	123	private
c_f_str_ptr	subroutine	curl_util	extlibs/curl/src/curl_util.f90	27	public
c_strlen	function	curl_util	extlibs/curl/src/curl_util.f90	17	private
abort	subroutine	fox_m_fsys_abort_flush	extlibs/xml/fsys/fox_m_fsys_abort_flush.F90	79	public
pure_pxfabort	function	fox_m_fsys_abort_flush	extlibs/xml/fsys/fox_m_fsys_abort_flush.F90	112	public
pxfabort	subroutine	fox_m_fsys_abort_flush	extlibs/xml/fsys/fox_m_fsys_abort_flush.F90	73	public
pxfflush	subroutine	fox_m_fsys_abort_flush	extlibs/xml/fsys/fox_m_fsys_abort_flush.F90	42	public
toLower	function	fox_m_fsys_string	extlibs/xml/fsys/fox_m_fsys_string.F90	18	public
mtprng_init	subroutine	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	132	private
mtprng_init_by_array	subroutine	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	156	private
mtprng_rand	function	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	264	private
mtprng_rand64	function	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	205	private
mtprng_rand_range	function	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	288	private
mtprng_rand_real1	function	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	306	private
mtprng_rand_real2	function	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	325	private
mtprng_rand_real3	function	fox_m_utils_mtprng	extlibs/xml/utils/fox_m_utils_mtprng.F90	344	private
appendPaths	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	572	private
checkAuthority	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	260	private
checkFragment	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	380	private
checkHost	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	250	private
checkIpvX	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	196	private
checkNonOpaquePath	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	314	private
checkOpaquePart	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	171	private
checkPath	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	360	private
checkPathSegment	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	299	private
checkQuery	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	373	private
checkScheme	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	183	private
cleanUp	subroutine	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	501	private
copyURI	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	797	public
destroyURI	subroutine	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	826	public
dumpURI	subroutine	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	746	public
expressSegments	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	674	private
expressURI	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	711	public
expressURI_len	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	693	private
getAuthority	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	882	public
getFragment	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	1002	public
getHost	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	926	public
getPath	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	958	public
getPort	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	948	public
getQuery	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	980	public
getScheme	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	859	public
getUserinfo	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	904	public
hasAuthority	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	871	public
hasFragment	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	991	public
hasHost	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	915	public
hasPort	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	937	public
hasQuery	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	969	public
hasScheme	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	848	public
hasUserinfo	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	893	public
isAbsoluteURI	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	533	public
normalizepath	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	614	private
parseURI	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	388	public
pctEncode	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	151	private
pctEncode_len	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	137	private
produceResult	subroutine	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	517	private
rebaseURI	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	547	public
unEscape_alloc	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	87	private
verifyWithPctEncoding	function	fox_m_utils_uri	extlibs/xml/utils/fox_m_utils_uri.F90	115	private
generate_uuid	function	fox_m_utils_uuid	extlibs/xml/utils/fox_m_utils_uuid.F90	36	public
get_utc_since_1582	function	fox_m_utils_uuid	extlibs/xml/utils/fox_m_utils_uuid.F90	183	private
int32ToHexOctets	function	fox_m_utils_uuid	extlibs/xml/utils/fox_m_utils_uuid.F90	154	private
int64ToHexOctets	function	fox_m_utils_uuid	extlibs/xml/utils/fox_m_utils_uuid.F90	166	private
isLeapYear	function	fox_m_utils_uuid	extlibs/xml/utils/fox_m_utils_uuid.F90	238	private
allowed_encoding	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	276	public
checkChars	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	232	public
isInitialNCNameChar	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	190	public
isInitialNameChar	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	162	public
isLegalChar	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	104	public
isLegalCharRef	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	132	public
isNCNameChar	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	203	public
isNameChar	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	176	public
isRepCharRef	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	147	public
isUSASCII	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	257	public
isXML1_0_NameChar	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	216	public
isXML1_1_NameChar	function	m_common_charset	extlibs/xml/common/m_common_charset.F90	224	public
checkCP	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	155	public
checkCPToEnd	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	300	public
copyCP	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	77	private
copyCPtree	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	87	private
destroyCP	subroutine	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	395	private
destroyCPtree	subroutine	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	402	public
dumpCP	subroutine	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	427	private
dumpCPtree	subroutine	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	453	public
elementContentCP	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	366	public
emptyContentCP	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	383	public
newCP	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	48	public
nextCPMustMatch	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	319	private
nextCPafterfail	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	246	private
nextCPaftermatch	function	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	209	private
transformCPPlus	subroutine	m_common_content_model	extlibs/xml/common/m_common_content_model.F90	124	public
expand_entity_value_alloc	function	m_common_entity_expand	extlibs/xml/common/m_common_entity_expand.F90	22	public
find_eor_eof	subroutine	m_common_io	extlibs/xml/common/m_common_io.F90	49	private
get_unit	subroutine	m_common_io	extlibs/xml/common/m_common_io.F90	28	public
setup_io	subroutine	m_common_io	extlibs/xml/common/m_common_io.F90	23	public
checkAttValue	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	369	public
checkCharacterEntityReference	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	423	public
checkEncName	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	51	public
checkNCName	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	190	public
checkNCNames	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	206	public
checkName	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	79	public
checkNames	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	94	public
checkNmtoken	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	245	public
checkNmtokens	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	257	public
checkPEDef	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	307	public
checkPITarget	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	66	public
checkPseudoAttValue	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	338	public
checkPublicId	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	297	public
checkQName	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	133	public
checkQNames	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	151	public
checkRepCharEntityReference	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	452	public
likeCharacterEntityReference	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	404	public
localpartOfQname	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	493	public
prefixOfQName	function	m_common_namecheck	extlibs/xml/common/m_common_namecheck.F90	485	public
add_notation	subroutine	m_common_notations	extlibs/xml/common/m_common_notations.F90	57	public
destroy_notation_list	subroutine	m_common_notations	extlibs/xml/common/m_common_notations.F90	43	public
init_notation_list	subroutine	m_common_notations	extlibs/xml/common/m_common_notations.F90	29	public
notation_exists	function	m_common_notations	extlibs/xml/common/m_common_notations.F90	103	public
destroy_xml_doc_state	subroutine	m_common_struct	extlibs/xml/common/m_common_struct.F90	57	public
init_xml_doc_state	subroutine	m_common_struct	extlibs/xml/common/m_common_struct.F90	47	public
register_external_GE	subroutine	m_common_struct	extlibs/xml/common/m_common_struct.F90	106	public
register_external_PE	subroutine	m_common_struct	extlibs/xml/common/m_common_struct.F90	81	public
register_internal_GE	subroutine	m_common_struct	extlibs/xml/common/m_common_struct.F90	94	public
register_internal_PE	subroutine	m_common_struct	extlibs/xml/common/m_common_struct.F90	69	public
GCONTR	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	846	private
addLineToLineList	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	2001	private
addLinesToContourObject	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	2074	private
addPolygonToPolygonList	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	2022	private
addPolygonsToContourObject	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	2108	private
add_line	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	271	private
add_point	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	246	private
add_polygon	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	392	private
checkPointOnPolygon	function	m_contours	extlibs/xml/wkml/m_contours.F90	1250	private
complexScalePoints	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	489	private
concatenate_lines	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	436	private
destroy_contourLines	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	136	private
destroy_contourObject	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	218	public
draw	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	785	private
init_contourObject	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	163	private
init_line	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	129	private
joinUpLines	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	1486	private
make_contours_on_a_complex_grid	function	m_contours	extlibs/xml/wkml/m_contours.F90	719	public
make_contours_on_a_simple_grid	function	m_contours	extlibs/xml/wkml/m_contours.F90	652	public
make_contours_on_simplest_grid	function	m_contours	extlibs/xml/wkml/m_contours.F90	583	public
nextLineOnEdge	function	m_contours	extlibs/xml/wkml/m_contours.F90	1290	private
pointInPolygon	function	m_contours	extlibs/xml/wkml/m_contours.F90	1269	private
polygonsInPolygons	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	1707	private
scale_contours_complex	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	558	private
scale_contours_simple	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	533	private
setpnew	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	1354	private
shave_polygon	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	307	private
shave_polygons	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	378	private
simpleScalePoints	subroutine	m_contours	extlibs/xml/wkml/m_contours.F90	464	private
whichLevel	function	m_contours	extlibs/xml/wkml/m_contours.F90	1231	private
destroyDOMException	subroutine	m_dom_error	extlibs/xml/dom/m_dom_error.f90	189	private
dom_error	subroutine	m_dom_error	extlibs/xml/dom/m_dom_error.f90	178	public
errorString	function	m_dom_error	extlibs/xml/dom/m_dom_error.f90	67	private
getExceptionCode	function	m_dom_error	extlibs/xml/dom/m_dom_error.f90	150	public
inException	function	m_dom_error	extlibs/xml/dom/m_dom_error.f90	204	public
internal_error	subroutine	m_dom_error	extlibs/xml/dom/m_dom_error.f90	196	public
throw_exception	subroutine	m_dom_error	extlibs/xml/dom/m_dom_error.f90	162	public
FoX_endDTD_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	320	private
characters_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	155	private
comment_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	209	private
endCdata_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	344	private
endDTD_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	257	private
endDocument_Handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	240	private
endElement_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	142	private
endEntity_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	431	private
entityErrorHandler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	374	private
externalEntityDecl_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	387	private
ignorableWhitespace_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	183	private
internalEntityDecl_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	348	private
normalErrorHandler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	368	private
notationDecl_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	327	private
parsefile	function	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	524	public
parsestring	function	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	562	public
processingInstruction_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	221	private
runParser	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	458	private
skippedEntity_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	445	private
startCdata_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	341	private
startDTD_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	244	private
startDocument_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	233	private
startElement_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	59	private
startEntity_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	417	private
unparsedEntityDecl_handler	subroutine	m_dom_parse	extlibs/xml/dom/m_dom_parse.f90	402	private
dump2	subroutine	m_dom_utils	extlibs/xml/dom/m_dom_utils.f90	59	private
dumpTree	subroutine	m_dom_utils	extlibs/xml/dom/m_dom_utils.f90	47	public
iter_dmp_xml	subroutine	m_dom_utils	extlibs/xml/dom/m_dom_utils.f90	217	private
serialize	subroutine	m_dom_utils	extlibs/xml/dom/m_dom_utils.f90	102	public
generate_nan	function	m_ieee	extlibs/xml/fsys/m_ieee.f90	10	public
attributeDecl_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	214	private
characters_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	143	private
close_xml_t	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	65	public
comment_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	238	private
elementDecl_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	222	private
endCdata_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	242	private
endDTD_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	245	private
endDocument_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	147	private
endElement_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	150	private
endEntity_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	248	private
endPrefixMapping_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	156	private
error_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	202	private
externalEntityDecl_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	227	private
fatalError_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	206	private
ignorableWhitespace_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	160	private
internalEntityDecl_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	233	private
notationDecl_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	189	private
open_xml_file	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	28	public
open_xml_string	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	54	public
parse	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	74	public
processingInstruction_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	164	private
skippedEntity_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	169	private
startCdata_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	252	private
startDTD_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	255	private
startDocument_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	173	private
startElement_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	176	private
startEntity_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	261	private
startPrefixMapping_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	184	private
stop_parser	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	304	public
unparsedEntityDecl_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	195	private
warning_handler	subroutine	m_sax_operate	extlibs/xml/sax/m_sax_operate.F90	210	private
FoX_endDTD_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	349	private
URIlength	function	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2991	private
add_entity	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2457	private
attributeDecl_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	315	private
characters_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	244	private
checkAttributes	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2583	private
checkIdRefs	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2938	private
checkXMLAttributes	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2829	private
close_tag	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2408	private
comment_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	339	private
elementDecl_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	323	private
endCdata_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	343	private
endDTD_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	346	private
endDTDchecks	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2871	private
endDocument_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	248	private
endElement_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	251	private
endEntity_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	354	private
endPrefixMapping_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	257	private
error_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	303	private
error_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2957	private
externalEntityDecl_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	328	private
fatalError_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	307	private
getDefaultAttributes	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2561	private
getLocalNameofQName	function	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	3019	private
getNSDict	function	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	63	public
getURIofQName	function	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	3004	private
ignorableWhitespace_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	261	private
internalEntityDecl_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	334	private
notationDecl_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	290	private
open_tag	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2335	private
parseDTD	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	1552	private
processingInstruction_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	265	private
sax_error	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	2953	private
sax_parse	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	153	public
sax_parser_destroy	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	120	public
sax_parser_init	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	70	public
skippedEntity_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	270	private
startCdata_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	358	private
startDTD_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	361	private
startDocument_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	274	private
startElement_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	277	private
startEntity_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	367	private
startPrefixMapping_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	285	private
unparsedEntityDecl_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	296	private
warning_handler	subroutine	m_sax_parser	extlibs/xml/sax/m_sax_parser.F90	311	private
close_actual_file	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	177	private
close_file	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	163	public
column	function	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	340	public
get_all_characters	function	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	313	public
get_character	function	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	286	public
line	function	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	333	public
open_actual_file	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	144	private
open_file	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	51	public
open_new_file	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	85	public
open_new_string	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	197	public
parse_text_declaration	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	366	public
parse_xml_declaration	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	347	public
pop_buffer_stack	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	250	public
push_chars	subroutine	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	278	public
reading_first_entity	function	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	394	public
reading_main_file	function	m_sax_reader	extlibs/xml/sax/m_sax_reader.F90	387	public
expand_pe_text	function	m_sax_tokenizer	extlibs/xml/sax/m_sax_tokenizer.F90	1064	public
normalize_attribute_text	function	m_sax_tokenizer	extlibs/xml/sax/m_sax_tokenizer.F90	937	public
sax_tokenize	subroutine	m_sax_tokenizer	extlibs/xml/sax/m_sax_tokenizer.F90	30	public
tokenizeDTD	subroutine	m_sax_tokenizer	extlibs/xml/sax/m_sax_tokenizer.F90	546	private
get_char_from_file	function	m_sax_xml_source	extlibs/xml/sax/m_sax_xml_source.F90	49	public
parse_declaration	subroutine	m_sax_xml_source	extlibs/xml/sax/m_sax_xml_source.F90	172	public
push_file_chars	subroutine	m_sax_xml_source	extlibs/xml/sax/m_sax_xml_source.F90	160	public
read_single_char	function	m_sax_xml_source	extlibs/xml/sax/m_sax_xml_source.F90	109	private
rewind_source	subroutine	m_sax_xml_source	extlibs/xml/sax/m_sax_xml_source.F90	150	private
cmlAddNamespace	subroutine	m_wcml_core	extlibs/xml/wcml/m_wcml_core.F90	57	public
cmlBeginFile	subroutine	m_wcml_core	extlibs/xml/wcml/m_wcml_core.F90	30	public
cmlEndCml	subroutine	m_wcml_core	extlibs/xml/wcml/m_wcml_core.F90	117	public
cmlFinishFile	subroutine	m_wcml_core	extlibs/xml/wcml/m_wcml_core.F90	47	public
cmlStartCml	subroutine	m_wcml_core	extlibs/xml/wcml/m_wcml_core.F90	72	public
cmlEndStep	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	274	public
cmlEndbandList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	174	public
cmlEndkpointList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	209	public
cmlEndmetadataList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	69	public
cmlEndmodule	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	244	public
cmlEndparameterList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	139	public
cmlEndpropertyList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	104	public
cmlStartStep	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	253	public
cmlStartbandList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	149	public
cmlStartkpointList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	184	public
cmlStartmetadataList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	44	public
cmlStartmodule	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	219	public
cmlStartparameterList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	114	public
cmlStartpropertyList	subroutine	m_wcml_lists	extlibs/xml/wcml/m_wcml_lists.F90	79	public
cmlAddMetadata	subroutine	m_wcml_metadata	extlibs/xml/wcml/m_wcml_metadata.F90	16	public
kmlAddNamespace	subroutine	m_wkml_core	extlibs/xml/wkml/m_wkml_core.F90	55	public
kmlBeginFile	subroutine	m_wkml_core	extlibs/xml/wkml/m_wkml_core.F90	20	public
kmlFinishFile	subroutine	m_wkml_core	extlibs/xml/wkml/m_wkml_core.F90	45	public
escape_string	function	m_wxml_escape	extlibs/xml/wxml/m_wxml_escape.F90	58	public
escape_string_len	function	m_wxml_escape	extlibs/xml/wxml/m_wxml_escape.F90	24	public
alloc	subroutine	mod_phasecorr	main/commanders/test/simple_test_mod_phasecorr.f90	70	public
gen_images	subroutine	mod_phasecorr	main/commanders/test/simple_test_mod_phasecorr.f90	81	public
kill	subroutine	mod_phasecorr	main/commanders/test/simple_test_mod_phasecorr.f90	63	public
new	subroutine	mod_phasecorr	main/commanders/test/simple_test_mod_phasecorr.f90	30	public
run	subroutine	mod_phasecorr	main/commanders/test/simple_test_mod_phasecorr.f90	36	public
vis_imgs	subroutine	mod_phasecorr	main/commanders/test/simple_test_mod_phasecorr.f90	117	public
AttributeArrayCh	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	597	private
AttributeArrayCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	503	private
AttributeArrayCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	521	private
AttributeArrayInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	573	private
AttributeArrayLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	585	private
AttributeArrayRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	539	private
AttributeArrayRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	556	private
AttributeMatrixCh	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	704	private
AttributeMatrixCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	610	private
AttributeMatrixCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	628	private
AttributeMatrixInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	680	private
AttributeMatrixLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	692	private
AttributeMatrixRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	646	private
AttributeMatrixRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	663	private
AttributeScalarCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	408	private
AttributeScalarCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	426	private
AttributeScalarInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	478	private
AttributeScalarLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	490	private
AttributeScalarRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	444	private
AttributeScalarRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	461	private
CharactersArrayCh	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	287	private
CharactersArrayCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	193	private
CharactersArrayCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	211	private
CharactersArrayInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	263	private
CharactersArrayLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	275	private
CharactersArrayRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	229	private
CharactersArrayRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	246	private
CharactersMatrixCh	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	394	private
CharactersMatrixCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	300	private
CharactersMatrixCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	318	private
CharactersMatrixInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	370	private
CharactersMatrixLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	382	private
CharactersMatrixRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	336	private
CharactersMatrixRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	353	private
CharactersScalarCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	97	private
CharactersScalarCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	115	private
CharactersScalarInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	167	private
CharactersScalarLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	179	private
CharactersScalarRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	133	private
CharactersScalarRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	150	private
FoX_error	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	657	private
FoX_error_base	subroutine	procedure	extlibs/xml/common/m_common_error.F90	88	public
FoX_fatal_base	subroutine	procedure	extlibs/xml/common/m_common_error.F90	107	public
FoX_get_fatal_errors	function	procedure	extlibs/xml/common/m_common_error.F90	196	public
FoX_get_fatal_warnings	function	procedure	extlibs/xml/common/m_common_error.F90	206	public
FoX_set_fatal_errors	subroutine	procedure	extlibs/xml/common/m_common_error.F90	191	public
FoX_set_fatal_warnings	subroutine	procedure	extlibs/xml/common/m_common_error.F90	201	public
FoX_warning_base	subroutine	procedure	extlibs/xml/common/m_common_error.F90	72	public
PseudoAttributeArrayCh	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	907	private
PseudoAttributeArrayCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	813	private
PseudoAttributeArrayCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	831	private
PseudoAttributeArrayInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	883	private
PseudoAttributeArrayLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	895	private
PseudoAttributeArrayRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	849	private
PseudoAttributeArrayRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	866	private
PseudoAttributeMatrixCh	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	1014	private
PseudoAttributeMatrixCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	920	private
PseudoAttributeMatrixCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	938	private
PseudoAttributeMatrixInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	990	private
PseudoAttributeMatrixLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	1002	private
PseudoAttributeMatrixRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	956	private
PseudoAttributeMatrixRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	973	private
PseudoAttributeScalarCmplxDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	718	private
PseudoAttributeScalarCmplxSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	736	private
PseudoAttributeScalarInt	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	788	private
PseudoAttributeScalarLg	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	800	private
PseudoAttributeScalarRealDp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	754	private
PseudoAttributeScalarRealSp	subroutine	procedure	extlibs/xml/wxml/m_wxml_overloads.F90	771	private
SavitzkyGolay_filter	subroutine	procedure	utils/math/simple_math.f90	1197	private
add2fbody_1	function	procedure	fileio/simple_fileio.f90	384	public
add2fbody_2	function	procedure	fileio/simple_fileio.f90	396	public
add2fbody_3	function	procedure	fileio/simple_fileio.f90	408	public
add2history_1	subroutine	procedure	main/stream/simple_stream_watcher.f90	219	private
add2history_2	subroutine	procedure	main/stream/simple_stream_watcher.f90	232	private
add2watchdirs	subroutine	procedure	main/stream/simple_stream_watcher.f90	307	private
addBondArray	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1555	private
addDefaultNS	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	132	public
addDlpolyMatrix_3_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1522	private
addDlpolyMatrix_3_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	805	private
addDlpolyMatrix_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1494	private
addDlpolyMatrix_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	777	private
addPrefix	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	353	private
addPrefixedNS	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	244	public
addPrefixedURI	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	176	private
add_attribute	function	procedure	extlibs/xml/common/m_common_element.F90	831	private
add_element	function	procedure	extlibs/xml/common/m_common_element.F90	239	private
add_entity	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	205	private
add_eol	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1710	private
add_error	subroutine	procedure	extlibs/xml/common/m_common_error.F90	141	public
add_external_entity	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	255	private
add_internal_entity	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	243	private
add_item_to_dict	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	468	private
add_string	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	55	private
add_to_buffer	subroutine	procedure	extlibs/xml/common/m_common_buffer.F90	169	private
add_to_path	subroutine	procedure	extlibs/json/json_value_module.f90	7622	private
add_to_stream_stack	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	1091	private
add_to_streaming	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	1066	private
addcoords_x3_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1465	private
addcoords_x3_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	748	private
addcoords_xfrac_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1483	private
addcoords_xfrac_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	766	private
addcoords_xyz3_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1435	private
addcoords_xyz3_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	718	private
addcoords_xyzfrac_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1450	private
addcoords_xyzfrac_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	733	private
adoptNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8130	public
alloc_chash	subroutine	procedure	utils/structs/simple_chash.f90	120	private
alloc_hash	subroutine	procedure	utils/structs/simple_hash.f90	105	private
alloc_imgarr	subroutine	procedure	utils/simple_imgarr_utils.f90	18	public
analyze_smat	subroutine	procedure	utils/math/simple_stat.f90	1115	private
ang2vox	function	procedure	utils/math/simple_linalg.f90	820	private
angle_sampling_1	function	procedure	main/simple_eul_prob_tab_utils.f90	309	private
angle_sampling_2	function	procedure	main/simple_eul_prob_tab_utils.f90	321	private
annotate_invalid_json	subroutine	procedure	extlibs/json/json_value_module.f90	9270	private
apod	function	procedure	main/interp/simple_kbinterpol.f90	119	private
apod_fast	function	procedure	main/interp/simple_kbinterpol.f90	144	private
apod_fast_device	function	procedure	main/interp/simple_kbinterpol.f90	434	private
apod_kb15_a2	function	procedure	main/interp/simple_kbinterpol.f90	462	private
apod_mat_2d	subroutine	procedure	main/interp/simple_kbinterpol.f90	172	private
apod_mat_2d_fast	subroutine	procedure	main/interp/simple_kbinterpol.f90	240	private
apod_mat_3d	subroutine	procedure	main/interp/simple_kbinterpol.f90	203	private
apod_mat_3d_fast	subroutine	procedure	main/interp/simple_kbinterpol.f90	266	private
append	function	procedure	utils/simple_string.f90	105	private
append2basename_1	function	procedure	fileio/simple_fileio.f90	421	public
append2basename_2	function	procedure	fileio/simple_fileio.f90	431	public
appendChild	function	procedure	extlibs/xml/dom/m_dom_dom.F90	2456	public
appendData	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10536	public
appendNSNode	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	11678	private
append_candidate	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	68	private
append_limited_char	subroutine	procedure	utils/simple_string_utils.f90	596	private
append_nl	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4781	private
append_nnm	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	5520	private
append_or_replace_candidate	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	91	private
append_ori	subroutine	procedure	main/ori/simple_ori.f90	219	private
append_text	subroutine	procedure	extlibs/json/json_value_module.f90	5617	private
apply2all	subroutine	procedure	main/simple_sym.f90	333	private
apply_1	subroutine	procedure	main/simple_sym.f90	307	private
apply_2	subroutine	procedure	main/simple_sym.f90	322	private
apply_convention	subroutine	procedure	main/ctf/simple_ctf.f90	260	private
apply_refine3D_search_overrides	subroutine	procedure	main/simple_abinitio_controller.f90	409	private
apply_sym_with_shift	subroutine	procedure	main/simple_sym.f90	531	private
arg	function	procedure	utils/math/simple_linalg.f90	266	private
arpack_stop	subroutine	procedure	utils/math/simple_linalg.f90	1354	private
arr2file_dp	subroutine	procedure	fileio/simple_fileio.f90	891	public
arr2file_sp	subroutine	procedure	fileio/simple_fileio.f90	874	public
arr2txtfile_1	subroutine	procedure	fileio/simple_fileio.f90	908	public
arr2txtfile_2	subroutine	procedure	fileio/simple_fileio.f90	921	public
arraytocomplexdp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1918	private
arraytocomplexsp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1662	private
arraytointeger	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1201	private
arraytological	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1041	private
arraytorealdp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1508	private
arraytorealsp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1354	private
arraytostring	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	741	private
assert_eq2	function	procedure	utils/simple_is_check_assert.f90	227	public
assert_eq3	function	procedure	utils/simple_is_check_assert.f90	240	public
assert_eq4	function	procedure	utils/simple_is_check_assert.f90	253	public
assert_eqn	function	procedure	utils/simple_is_check_assert.f90	266	public
assign	subroutine	procedure	utils/simple_string.f90	89	private
att_value_normalize	function	procedure	extlibs/xml/common/m_common_element.F90	1623	private
att_value_normalize_len	function	procedure	extlibs/xml/common/m_common_element.F90	1604	private
attributeDecl_handler	subroutine	procedure	extlibs/xml/common/m_common_element.F90	1351	private
attribute_has_default	function	procedure	extlibs/xml/common/m_common_element.F90	1465	private
augment_partition_job_descr	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	338	private
automatic_thresh_sobel	subroutine	procedure	utils/simple_segmentation.f90	406	public
autoscale	subroutine	procedure	utils/simple_magic_boxes.f90	104	public
avg_frac_smallest	function	procedure	utils/math/simple_stat.f90	203	private
avg_sdev_1	subroutine	procedure	utils/math/simple_stat.f90	71	private
avg_sdev_2	subroutine	procedure	utils/math/simple_stat.f90	104	private
avg_sdev_3	subroutine	procedure	utils/math/simple_stat.f90	137	private
avg_sdev_4	subroutine	procedure	utils/math/simple_stat.f90	170	private
balanced	subroutine	procedure	utils/math/simple_ran_tabu.f90	242	private
basename	function	procedure	fileio/simple_fileio.f90	573	public
batch_gauss2Dfit_1	subroutine	procedure	utils/simple_gauss2Dfit.f90	26	public
batch_gauss2Dfit_2	subroutine	procedure	utils/simple_gauss2Dfit.f90	63	public
bessi0	function	procedure	main/interp/simple_winfuns.f90	349	private
bman_apod	function	procedure	main/interp/simple_winfuns.f90	163	private
bman_instr	function	procedure	main/interp/simple_winfuns.f90	175	private
bounds_from_mask3D	subroutine	procedure	utils/math/simple_math.f90	67	private
buffer_length	function	procedure	extlibs/xml/common/m_common_buffer.F90	98	private
buffer_to_chararray	function	procedure	extlibs/xml/common/m_common_buffer.F90	87	private
buffer_to_str	function	procedure	extlibs/xml/common/m_common_buffer.F90	79	private
build_eullims	subroutine	procedure	main/simple_sym.f90	162	private
build_pind_lookup	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	179	private
build_refine3D_stage_cfg	subroutine	procedure	main/simple_abinitio_controller.f90	178	private
build_refspiral	subroutine	procedure	main/simple_sym.f90	725	private
butterworth	function	procedure	utils/filter/simple_butterworth.f90	19	private
butterworth_filter_1	subroutine	procedure	utils/filter/simple_butterworth.f90	53	private
butterworth_filter_2	subroutine	procedure	utils/filter/simple_butterworth.f90	65	private
butterworth_filter_3	subroutine	procedure	utils/filter/simple_butterworth.f90	75	private
butterworth_filter_4	subroutine	procedure	utils/filter/simple_butterworth.f90	85	private
butterworth_filter_5	subroutine	procedure	utils/filter/simple_butterworth.f90	95	private
c_f_str_chars	subroutine	procedure	extlibs/unix/src/unix.f90	143	public
c_f_str_ptr	subroutine	procedure	extlibs/unix/src/unix.f90	158	public
c_int32_to_uint16	function	procedure	extlibs/unix/src/unix.f90	61	public
c_int64_to_uint32	function	procedure	extlibs/unix/src/unix.f90	77	public
c_uint16_to_int32	function	procedure	extlibs/unix/src/unix.f90	93	public
c_uint32_to_int64	function	procedure	extlibs/unix/src/unix.f90	105	public
calc_ap_pref	function	procedure	utils/math/simple_stat.f90	1242	private
calc_athres	function	procedure	main/simple_eul_prob_tab_utils.f90	261	private
calc_cartesian_corrmat_1	subroutine	procedure	utils/simple_corrmat.f90	23	public
calc_cartesian_corrmat_2	subroutine	procedure	utils/simple_corrmat.f90	77	public
calc_graphene_mask	function	procedure	utils/math/simple_math_ft.f90	29	private
calc_inpl_invariant_cc_nomirr	function	procedure	utils/simple_corrmat.f90	133	public
calc_num2sample	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	249	private
calc_offset2D	subroutine	procedure	main/ori/simple_ori.f90	1574	private
calc_score_thres	function	procedure	utils/math/simple_math.f90	889	private
calc_stats	subroutine	procedure	utils/math/simple_stat.f90	878	private
canSetParameter_ch	function	procedure	extlibs/xml/dom/m_dom_dom.F90	686	private
canSetParameter_log	function	procedure	extlibs/xml/dom/m_dom_dom.F90	658	private
canny	subroutine	procedure	utils/simple_segmentation.f90	486	public
canny_edge	subroutine	procedure	utils/simple_segmentation.f90	625	public
cast_str_types	function	procedure	utils/simple_string_utils.f90	59	private
char2str	function	procedure	utils/simple_string.f90	65	private
chash2ori	subroutine	procedure	main/ori/simple_ori.f90	1256	private
chash2str	function	procedure	utils/structs/simple_chash.f90	470	private
check4nans2D_1	subroutine	procedure	utils/simple_is_check_assert.f90	176	public
check4nans2D_2	subroutine	procedure	utils/simple_is_check_assert.f90	185	public
check4nans3D_1	subroutine	procedure	utils/simple_is_check_assert.f90	158	public
check4nans3D_2	subroutine	procedure	utils/simple_is_check_assert.f90	167	public
check4nans_1	subroutine	procedure	utils/simple_is_check_assert.f90	194	public
check4nans_2	subroutine	procedure	utils/simple_is_check_assert.f90	211	public
checkBondIdRefs	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1589	private
checkColorHex	function	procedure	extlibs/xml/wkml/m_wkml_color.F90	76	private
checkContentModel	function	procedure	extlibs/xml/common/m_common_elstack.F90	166	private
checkContentModelToEnd	function	procedure	extlibs/xml/common/m_common_elstack.F90	184	private
checkEndNamespaces	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	668	private
checkExistingRefs	function	procedure	extlibs/xml/wxml/m_wxml_core.F90	554	private
checkExistingRefsInAttValue	function	procedure	extlibs/xml/wxml/m_wxml_core.F90	1361	private
checkFmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2090	private
checkNamespaces	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	442	private
checkNamespacesWriting	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	615	private
checkParsedRefsInAttValue	function	procedure	extlibs/xml/wxml/m_wxml_core.F90	1388	private
check_buffer	subroutine	procedure	extlibs/xml/common/m_common_buffer.F90	141	private
check_duplicates	function	procedure	extlibs/xml/common/m_common_element.F90	749	private
check_if_valid	subroutine	procedure	extlibs/json/json_value_module.f90	2596	private
check_xf	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1702	private
clear_history	subroutine	procedure	main/stream/simple_stream_watcher.f90	253	private
clear_partition_job_descr	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	362	private
clear_stack	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	243	private
cloneNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	2948	public
close_start_tag	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1735	private
cmlAddAngle_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_geometry.F90	115	private
cmlAddAngle_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_geometry.F90	56	private
cmlAddAtoms_3_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1136	private
cmlAddAtoms_3_dp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1182	private
cmlAddAtoms_3_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	419	private
cmlAddAtoms_3_sp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	465	private
cmlAddAtomsdp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1050	private
cmlAddAtomsdp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1093	private
cmlAddAtomssp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	333	private
cmlAddAtomssp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	376	private
cmlAddBandListdp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	486	private
cmlAddBandListsp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	224	private
cmlAddCoords_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1406	private
cmlAddCoords_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	689	private
cmlAddCrystaldp	subroutine	procedure	extlibs/xml/wcml/m_wcml_lattice.F90	143	private
cmlAddCrystalsp	subroutine	procedure	extlibs/xml/wcml/m_wcml_lattice.F90	44	private
cmlAddEigenValueVectorCmplxdp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	452	private
cmlAddEigenValueVectorCmplxsp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	190	private
cmlAddEigenValueVectordp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	417	private
cmlAddEigenValueVectorsp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	155	private
cmlAddEigenValuedp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	386	private
cmlAddEigenValuesp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	124	private
cmlAddKPointdp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	362	private
cmlAddKPointsp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	100	private
cmlAddLatticedp	subroutine	procedure	extlibs/xml/wcml/m_wcml_lattice.F90	201	private
cmlAddLatticesp	subroutine	procedure	extlibs/xml/wcml/m_wcml_lattice.F90	102	private
cmlAddLength_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_geometry.F90	97	private
cmlAddLength_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_geometry.F90	38	private
cmlAddMolecule_3_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	943	private
cmlAddMolecule_3_dp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	997	private
cmlAddMolecule_3_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	226	private
cmlAddMolecule_3_sp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	280	private
cmlAddMoleculedp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	837	private
cmlAddMoleculedp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	890	private
cmlAddMoleculesp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	120	private
cmlAddMoleculesp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	173	private
cmlAddParticles_3_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1313	private
cmlAddParticles_3_dp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1359	private
cmlAddParticles_3_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	596	private
cmlAddParticles_3_sp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	642	private
cmlAddParticlesdp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1227	private
cmlAddParticlesdp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	1270	private
cmlAddParticlessp	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	510	private
cmlAddParticlessp_sh	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	553	private
cmlAddSymmetryNoOps	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	638	private
cmlAddSymmetrydp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	526	private
cmlAddSymmetrysp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	264	private
cmlAddTorsion_dp	subroutine	procedure	extlibs/xml/wcml/m_wcml_geometry.F90	134	private
cmlAddTorsion_sp	subroutine	procedure	extlibs/xml/wcml/m_wcml_geometry.F90	75	private
cmlEndBand	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	631	private
cmlEndKpoint	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	624	private
cmlEndMolecule	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	112	public
cmlStartBand	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	590	private
cmlStartKPointdp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	328	private
cmlStartKPointsp	subroutine	procedure	extlibs/xml/wcml/m_wcml_coma.F90	66	private
cmlStartMolecule	subroutine	procedure	extlibs/xml/wcml/m_wcml_molecule.F90	79	public
cnt_recs_per_line	function	procedure	utils/simple_string_utils.f90	775	private
comp_addr_logi	function	procedure	main/image/simple_ftiter.f90	341	private
comp_addr_phys1	function	procedure	main/image/simple_ftiter.f90	296	private
comp_addr_phys2	function	procedure	main/image/simple_ftiter.f90	311	private
comp_addr_phys3	function	procedure	main/image/simple_ftiter.f90	326	private
comp_addr_phys_orig	function	procedure	main/image/simple_ftiter.f90	270	private
compact	subroutine	procedure	utils/simple_string_utils.f90	168	private
compact_real_string	subroutine	procedure	extlibs/json/json_string_utilities.f90	218	private
compeuler	subroutine	procedure	main/ori/simple_ori.f90	1464	private
compose2dshift3d	subroutine	procedure	main/ori/simple_ori.f90	1531	private
compose3d2d	subroutine	procedure	main/ori/simple_ori.f90	1482	private
concat_complex_dp_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2238	private
concat_complex_sp_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2215	private
concat_int_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2123	private
concat_logical_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2146	private
concat_real_dp_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2192	private
concat_real_sp_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2169	private
concat_str_complex_dp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2227	private
concat_str_complex_sp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2204	private
concat_str_int	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2112	private
concat_str_logical	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2135	private
concat_str_real_dp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2181	private
concat_str_real_sp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2158	private
constructor	function	procedure	utils/qsys/simple_qsys_ctrl.f90	118	private
constructor	function	procedure	utils/math/simple_ran_tabu.f90	42	private
constructor	function	procedure	main/simple_sym.f90	94	private
constructor	function	procedure	main/ori/simple_ori.f90	132	private
constructor	function	procedure	main/ctf/simple_ctf.f90	54	private
constructor	function	procedure	main/interp/simple_kbinterpol.f90	58	private
constructor	function	procedure	main/interp/simple_winfuns.f90	72	private
constructor	function	procedure	main/stream/simple_stream_watcher.f90	59	private
constructor	function	procedure	main/image/simple_ftiter.f90	60	private
constructor	function	procedure	main/image/simple_image.f90	2640	private
constructor_1	function	procedure	utils/structs/simple_hash.f90	67	private
constructor_1	function	procedure	utils/structs/simple_chash.f90	82	private
constructor_2	function	procedure	utils/structs/simple_hash.f90	73	private
constructor_2	function	procedure	utils/structs/simple_chash.f90	88	private
conv2rank_weights	subroutine	procedure	utils/math/simple_stat.f90	1471	private
convert	subroutine	procedure	extlibs/json/json_value_module.f90	7361	private
copy	subroutine	procedure	utils/structs/simple_hash.f90	141	private
copy	subroutine	procedure	utils/structs/simple_chash.f90	155	private
copy	subroutine	procedure	main/ori/simple_ori.f90	182	private
copy	subroutine	procedure	main/interp/simple_kbinterpol.f90	83	private
copyDOMConfig	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	713	public
copyURIMapping	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	114	private
copy_imgarr	function	procedure	utils/simple_imgarr_utils.f90	68	public
corrs2weights	function	procedure	utils/math/simple_stat.f90	928	private
cosedge_1	function	procedure	main/interp/simple_edges_sqwins.f90	136	private
cosedge_2	function	procedure	main/interp/simple_edges_sqwins.f90	156	private
cosedge_inner_1	function	procedure	main/interp/simple_edges_sqwins.f90	224	private
cosedge_inner_2	function	procedure	main/interp/simple_edges_sqwins.f90	242	private
cosedge_r2_2d	function	procedure	main/interp/simple_edges_sqwins.f90	194	private
cosedge_r2_3d	function	procedure	main/interp/simple_edges_sqwins.f90	172	private
countcomplexdp	function	procedure	extlibs/xml/fsys/fox_m_fsys_count_parse_input.F90	447	private
countcomplexsp	function	procedure	extlibs/xml/fsys/fox_m_fsys_count_parse_input.F90	346	private
countinteger	function	procedure	extlibs/xml/fsys/fox_m_fsys_count_parse_input.F90	191	private
countlogical	function	procedure	extlibs/xml/fsys/fox_m_fsys_count_parse_input.F90	140	private
countrealdp	function	procedure	extlibs/xml/fsys/fox_m_fsys_count_parse_input.F90	294	private
countrealsp	function	procedure	extlibs/xml/fsys/fox_m_fsys_count_parse_input.F90	242	private
countstring	function	procedure	extlibs/xml/fsys/fox_m_fsys_count_parse_input.F90	29	private
createAttribute	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6533	public
createAttributeNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7343	public
createCdataSection	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6398	public
createComment	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6336	public
createDocument	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5672	public
createDocumentFragment	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6245	public
createDocumentType	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5589	public
createElement	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6139	public
createElementNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7168	public
createEmptyDocument	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5800	public
createEmptyElement	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6218	private
createEmptyElementNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7318	private
createEmptyEntityReference	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6698	public
createEntity	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8682	public
createEntityReference	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6590	public
createNamespaceNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8642	public
createNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	727	private
createNotation	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8730	public
createProcessingInstruction	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6460	public
createTextNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6284	public
create_hist_vector	subroutine	procedure	utils/math/simple_math.f90	766	private
cross	function	procedure	utils/math/simple_math.f90	1113	private
csq_1	function	procedure	utils/math/simple_math_ft.f90	71	private
csq_2	function	procedure	utils/math/simple_math_ft.f90	90	private
csv_field	function	procedure	utils/simple_string_utils.f90	684	private
curl_easy_escape	function	procedure	extlibs/curl/src/curl_easy.f90	1084	private
curl_easy_getinfo_char	function	procedure	extlibs/curl/src/curl_easy.f90	1104	private
curl_easy_getinfo_double	function	procedure	extlibs/curl/src/curl_easy.f90	1118	private
curl_easy_getinfo_int	function	procedure	extlibs/curl/src/curl_easy.f90	1128	private
curl_easy_getinfo_long	function	procedure	extlibs/curl/src/curl_easy.f90	1141	private
curl_easy_getinfo_ptr	function	procedure	extlibs/curl/src/curl_easy.f90	1154	private
curl_easy_setopt_char	function	procedure	extlibs/curl/src/curl_easy.f90	1164	private
curl_easy_setopt_funptr	function	procedure	extlibs/curl/src/curl_easy.f90	1174	private
curl_easy_setopt_int	function	procedure	extlibs/curl/src/curl_easy.f90	1184	private
curl_easy_setopt_long	function	procedure	extlibs/curl/src/curl_easy.f90	1194	private
curl_easy_setopt_ptr	function	procedure	extlibs/curl/src/curl_easy.f90	1204	private
curl_easy_strerror	function	procedure	extlibs/curl/src/curl_easy.f90	1214	private
curl_easy_unescape	function	procedure	extlibs/curl/src/curl_easy.f90	1225	private
curl_escape	function	procedure	extlibs/curl/src/curl_easy.f90	1247	private
curl_global_init	function	procedure	extlibs/curl/src/curl_easy.f90	1266	private
curl_mime_encoder	function	procedure	extlibs/curl/src/curl_easy.f90	1274	private
curl_mime_filedata	function	procedure	extlibs/curl/src/curl_easy.f90	1283	private
curl_mime_filename	function	procedure	extlibs/curl/src/curl_easy.f90	1292	private
curl_mime_name	function	procedure	extlibs/curl/src/curl_easy.f90	1301	private
curl_mime_type	function	procedure	extlibs/curl/src/curl_easy.f90	1310	private
curl_slist_append	function	procedure	extlibs/curl/src/curl_easy.f90	1338	private
curl_unescape	function	procedure	extlibs/curl/src/curl_easy.f90	1319	private
curl_version	function	procedure	extlibs/curl/src/curl_easy.f90	1348	private
curl_version_info	function	procedure	extlibs/curl/src/curl_easy.f90	1358	private
cyci_1d	function	procedure	utils/math/simple_math_ft.f90	110	private
cyci_1d_static	function	procedure	utils/math/simple_math_ft.f90	124	private
dble2str	function	procedure	utils/simple_string.f90	83	private
dealloc_chash	subroutine	procedure	utils/structs/simple_chash.f90	674	private
dealloc_hash	subroutine	procedure	utils/structs/simple_hash.f90	463	private
dealloc_imgarr	subroutine	procedure	utils/simple_imgarr_utils.f90	100	public
declare_coarray_jobs_finished	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	770	private
declared_element	function	procedure	extlibs/xml/common/m_common_element.F90	207	private
decode_rfc6901	function	procedure	extlibs/json/json_string_utilities.f90	849	public
default_comp_ucs4	function	procedure	extlibs/json/json_string_utilities.f90	712	private
default_join_ucs4	function	procedure	extlibs/json/json_string_utilities.f90	676	private
default_neq_ucs4	function	procedure	extlibs/json/json_string_utilities.f90	748	private
deg2rad_dp	function	procedure	utils/math/simple_linalg.f90	802	private
deg2rad_sp	function	procedure	utils/math/simple_linalg.f90	796	private
del_files_1	subroutine	procedure	fileio/simple_fileio.f90	694	public
del_files_2	subroutine	procedure	fileio/simple_fileio.f90	712	public
delete	subroutine	procedure	utils/structs/simple_hash.f90	251	private
delete	subroutine	procedure	utils/structs/simple_chash.f90	318	private
deleteData	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10723	public
delete_2Dclustering	subroutine	procedure	main/ori/simple_ori.f90	252	private
delete_3Dalignment	subroutine	procedure	main/ori/simple_ori.f90	281	private
delete_entry	subroutine	procedure	main/ori/simple_ori.f90	242	private
destroyAllNodesRecursively	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	862	public
destroyDOMConfig	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	719	private
destroyDocument	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	5818	public
destroyDocumentType	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	823	private
destroyElementOrAttribute	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	766	private
destroyEntityOrNotation	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	798	private
destroyNamedNodeMap	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	5553	public
destroyNamespaceDictionary	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	94	private
destroyNode	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	745	private
destroyNodeContents	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	948	private
destroyNodeList	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4914	public
destroy_attribute_list	subroutine	procedure	extlibs/xml/common/m_common_element.F90	804	private
destroy_attribute_t	subroutine	procedure	extlibs/xml/common/m_common_element.F90	794	private
destroy_dict	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	971	private
destroy_dict_item	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	948	private
destroy_element_list	subroutine	procedure	extlibs/xml/common/m_common_element.F90	177	private
destroy_elstack	subroutine	procedure	extlibs/xml/common/m_common_elstack.F90	63	private
destroy_entity	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	124	private
destroy_entity_list	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	156	private
destroy_error_stack	subroutine	procedure	extlibs/xml/common/m_common_error.F90	129	public
destroy_json_core	subroutine	procedure	extlibs/json/json_value_module.f90	808	private
destroy_json_data	subroutine	procedure	extlibs/json/json_value_module.f90	1245	private
destroy_string_list	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	42	private
destroy_vs	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_array_str.F90	83	private
detect_and_add_dirs	subroutine	procedure	main/stream/simple_stream_watcher.f90	285	private
detect_peak_thres_1	subroutine	procedure	utils/simple_segmentation.f90	19	public
detect_peak_thres_2	subroutine	procedure	utils/simple_segmentation.f90	50	public
detect_peak_thres_fdr	subroutine	procedure	utils/simple_segmentation.f90	93	public
detect_peak_thres_for_npeaks	subroutine	procedure	utils/simple_segmentation.f90	68	public
detect_peak_thres_sortmeans	subroutine	procedure	utils/simple_segmentation.f90	247	public
dgelss	subroutine	procedure	utils/math/simple_linalg.f90	140	private
dgelsy	subroutine	procedure	utils/math/simple_linalg.f90	132	private
dgesvd	subroutine	procedure	utils/math/simple_linalg.f90	170	private
dgetrf	subroutine	procedure	utils/math/simple_linalg.f90	184	private
dgetri	subroutine	procedure	utils/math/simple_linalg.f90	197	private
discrete_read_imgbatch	subroutine	procedure	main/strategies/search/simple_matcher_ptcl_io.f90	222	private
discrete_read_imgbatch_source	subroutine	procedure	main/strategies/search/simple_matcher_ptcl_io.f90	122	private
dispatch_task_to_persistent_worker	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	871	private
dist_avg	function	procedure	utils/simple_segmentation.f90	370	public
dist_btw_farthest	function	procedure	utils/simple_segmentation.f90	353	public
dist_btw_nearest	function	procedure	utils/simple_segmentation.f90	336	public
dist_eval_fun	function	procedure	main/simple_eul_prob_tab_utils.f90	60	private
dists2order	function	procedure	utils/math/simple_srch_sort_loc.f90	690	private
dists2scores_percen	subroutine	procedure	utils/math/simple_stat.f90	1172	private
dmat2smat	function	procedure	utils/math/simple_stat.f90	1136	private
dnrm2	function	procedure	utils/math/simple_linalg.f90	118	private
double_thresh	subroutine	procedure	utils/simple_segmentation.f90	605	public
dposv	subroutine	procedure	utils/math/simple_linalg.f90	148	private
dsyev	subroutine	procedure	utils/math/simple_linalg.f90	212	private
dump_buffer	subroutine	procedure	extlibs/xml/common/m_common_buffer.F90	107	private
dumpnsdict	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	719	public
duplicate_key_func	subroutine	procedure	extlibs/json/json_value_module.f90	5185	private
dynfind	function	procedure	main/image/simple_ftiter.f90	355	private
e1get	function	procedure	main/ori/simple_ori.f90	752	private
e1set	subroutine	procedure	main/ori/simple_ori.f90	378	private
e2get	function	procedure	main/ori/simple_ori.f90	762	private
e2set	subroutine	procedure	main/ori/simple_ori.f90	388	private
e3get	function	procedure	main/ori/simple_ori.f90	772	private
e3set	subroutine	procedure	main/ori/simple_ori.f90	398	private
eigh_sp	subroutine	procedure	utils/math/simple_linalg.f90	910	private
eigsrt_dp	subroutine	procedure	utils/math/simple_linalg.f90	298	private
eigsrt_sp	subroutine	procedure	utils/math/simple_linalg.f90	272	private
elementContent	function	procedure	extlibs/xml/common/m_common_elstack.F90	198	private
elim_dup	subroutine	procedure	utils/math/simple_math.f90	108	private
ellipse	subroutine	procedure	main/image/simple_image.f90	2667	private
emit_refine3D_stage_cfg	subroutine	procedure	main/simple_abinitio_controller.f90	426	private
emptyContent	function	procedure	extlibs/xml/common/m_common_elstack.F90	211	private
encode_rfc6901	function	procedure	extlibs/json/json_string_utilities.f90	870	public
end_prefix_handler	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	458	private
end_prefix_handler	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	675	private
ensure_capacity	subroutine	procedure	extlibs/json/json_value_module.f90	5601	private
equispaced_vals	function	procedure	utils/math/simple_math.f90	29	private
escape_string	subroutine	procedure	extlibs/json/json_string_utilities.f90	297	public
estimate_lplim3D	subroutine	procedure	utils/filter/simple_opt_filter.f90	92	private
estimate_lplim_1	subroutine	procedure	utils/filter/simple_opt_filter.f90	19	private
estimate_lplim_2	subroutine	procedure	utils/filter/simple_opt_filter.f90	73	private
estimate_lplims2D	subroutine	procedure	utils/filter/simple_opt_filter.f90	160	private
euclid_dp	function	procedure	utils/math/simple_linalg.f90	865	private
euclid_sp_1	function	procedure	utils/math/simple_linalg.f90	853	private
euclid_sp_2	function	procedure	utils/math/simple_linalg.f90	859	private
euldist	function	procedure	main/ori/simple_ori.f90	1656	private
eulprob_corr_switch	function	procedure	main/simple_eul_prob_tab_utils.f90	296	private
eulprob_dist_switch	function	procedure	main/simple_eul_prob_tab_utils.f90	274	private
eval_apod	function	procedure	main/interp/simple_winfuns.f90	143	private
eval_instr	function	procedure	main/interp/simple_winfuns.f90	151	private
existing_attribute	function	procedure	extlibs/xml/common/m_common_element.F90	818	private
existing_element	function	procedure	extlibs/xml/common/m_common_element.F90	191	private
existing_entity	function	procedure	extlibs/xml/common/m_common_entities.F90	387	private
exists	function	procedure	main/ori/simple_ori.f90	726	private
expand_char_entity	function	procedure	extlibs/xml/common/m_common_entities.F90	363	private
expand_char_entity_len	function	procedure	extlibs/xml/common/m_common_entities.F90	327	private
expand_entity	function	procedure	extlibs/xml/common/m_common_entities.F90	459	private
expand_entity_len	function	procedure	extlibs/xml/common/m_common_entities.F90	443	private
expand_entity_text	function	procedure	extlibs/xml/common/m_common_entities.F90	424	private
expand_entity_text_len	function	procedure	extlibs/xml/common/m_common_entities.F90	408	private
express_att_decl_len	function	procedure	extlibs/xml/common/m_common_element.F90	1517	private
express_attribute_declaration	function	procedure	extlibs/xml/common/m_common_element.F90	1546	private
extractDataAttNSChArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2039	private
extractDataAttNSChMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2330	private
extractDataAttNSChSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1748	private
extractDataAttNSCmplxDpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1793	private
extractDataAttNSCmplxDpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2084	private
extractDataAttNSCmplxDpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1502	private
extractDataAttNSCmplxSpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1834	private
extractDataAttNSCmplxSpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2125	private
extractDataAttNSCmplxSpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1543	private
extractDataAttNSIntArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1957	private
extractDataAttNSIntMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2248	private
extractDataAttNSIntSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1666	private
extractDataAttNSLgArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1998	private
extractDataAttNSLgMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2289	private
extractDataAttNSLgSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1707	private
extractDataAttNSRealDpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1875	private
extractDataAttNSRealDpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2166	private
extractDataAttNSRealDpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1584	private
extractDataAttNSRealSpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1916	private
extractDataAttNSRealSpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	2207	private
extractDataAttNSRealSpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1625	private
extractDataAttributeChArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1182	private
extractDataAttributeChMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1459	private
extractDataAttributeChSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	905	private
extractDataAttributeCmplxDpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	948	private
extractDataAttributeCmplxDpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1225	private
extractDataAttributeCmplxDpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	671	private
extractDataAttributeCmplxSpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	987	private
extractDataAttributeCmplxSpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1264	private
extractDataAttributeCmplxSpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	710	private
extractDataAttributeIntArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1104	private
extractDataAttributeIntMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1381	private
extractDataAttributeIntSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	827	private
extractDataAttributeLgArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1143	private
extractDataAttributeLgMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1420	private
extractDataAttributeLgSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	866	private
extractDataAttributeRealDpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1026	private
extractDataAttributeRealDpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1303	private
extractDataAttributeRealDpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	749	private
extractDataAttributeRealSpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1065	private
extractDataAttributeRealSpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	1342	private
extractDataAttributeRealSpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	788	private
extractDataContentChArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	449	private
extractDataContentChMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	641	private
extractDataContentChSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	257	private
extractDataContentCmplxDpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	287	private
extractDataContentCmplxDpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	479	private
extractDataContentCmplxDpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	95	private
extractDataContentCmplxSpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	314	private
extractDataContentCmplxSpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	506	private
extractDataContentCmplxSpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	122	private
extractDataContentIntArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	395	private
extractDataContentIntMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	587	private
extractDataContentIntSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	203	private
extractDataContentLgArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	422	private
extractDataContentLgMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	614	private
extractDataContentLgSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	230	private
extractDataContentRealDpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	341	private
extractDataContentRealDpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	533	private
extractDataContentRealDpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	149	private
extractDataContentRealSpArr	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	368	private
extractDataContentRealSpMat	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	560	private
extractDataContentRealSpSca	subroutine	procedure	extlibs/xml/dom/m_dom_extras.F90	176	private
extract_imgarr	function	procedure	utils/simple_imgarr_utils.f90	55	public
f_c_str_chars	subroutine	procedure	extlibs/unix/src/unix.f90	183	public
f_readdir	function	procedure	extlibs/unix/src/unix.f90	117	public
f_strerror	function	procedure	extlibs/unix/src/unix.f90	131	public
fclose	subroutine	procedure	fileio/simple_fileio.f90	270	public
fdim	function	procedure	utils/math/simple_math_ft.f90	132	private
file2drarr	function	procedure	fileio/simple_fileio.f90	956	public
file2imat	subroutine	procedure	fileio/simple_fileio.f90	1051	public
file2lmat	subroutine	procedure	fileio/simple_fileio.f90	1036	public
file2rarr	function	procedure	fileio/simple_fileio.f90	934	public
file2rmat	subroutine	procedure	fileio/simple_fileio.f90	1021	public
fileiochk	subroutine	procedure	fileio/simple_fileio.f90	62	public
filelength	function	procedure	fileio/simple_fileio.f90	314	public
filepath_1	function	procedure	fileio/simple_fileio.f90	661	public
filepath_2	function	procedure	fileio/simple_fileio.f90	672	public
filepath_3	function	procedure	fileio/simple_fileio.f90	679	public
filepath_4	function	procedure	fileio/simple_fileio.f90	686	public
find_1	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	30	private
find_2	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	48	private
find_closest_proj	function	procedure	main/simple_sym.f90	563	private
find_larger_magic_box	function	procedure	utils/simple_magic_boxes.f90	56	public
find_magic_box	function	procedure	utils/simple_magic_boxes.f90	72	public
find_magic_boxes4scale	function	procedure	utils/simple_magic_boxes.f90	94	public
find_medoids	subroutine	procedure	utils/math/simple_math.f90	405	private
findloc_str_1	function	procedure	utils/simple_string_utils.f90	813	private
findloc_str_2	function	procedure	utils/simple_string_utils.f90	826	private
fit_lsq_plane	subroutine	procedure	utils/math/simple_linalg.f90	324	private
fit_straight_line	subroutine	procedure	utils/math/simple_linalg.f90	353	private
fmtsymstr	function	procedure	main/simple_sym.f90	1865	private
fname2ext	function	procedure	fileio/simple_fileio.f90	535	public
fname2format	function	procedure	fileio/simple_fileio.f90	771	public
fname_new_ext_1	function	procedure	fileio/simple_fileio.f90	518	public
fname_new_ext_2	function	procedure	fileio/simple_fileio.f90	526	public
fopen	subroutine	procedure	fileio/simple_fileio.f90	80	public
fortran_logical	function	procedure	utils/simple_string_utils.f90	640	private
fortran_quote	function	procedure	utils/simple_string_utils.f90	616	private
fortran_symbol_from_string	function	procedure	utils/simple_string_utils.f90	560	private
fplane_get_cmplx	function	procedure	utils/math/simple_math_ft.f90	145	private
fplane_get_ctfsq	function	procedure	utils/math/simple_math_ft.f90	159	private
free_all_cunits	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	225	private
funcs	function	procedure	utils/math/simple_linalg.f90	627	private
funcs	function	procedure	utils/math/simple_linalg.f90	655	private
funcs	function	procedure	utils/math/simple_linalg.f90	683	private
funcs	function	procedure	utils/math/simple_linalg.f90	712	private
funit_size	function	procedure	fileio/simple_fileio.f90	340	public
gasdev_2	function	procedure	utils/math/simple_rnd.f90	290	private
gasdev_3	function	procedure	utils/math/simple_rnd.f90	299	private
gau_rnd_shift	subroutine	procedure	main/ori/simple_ori.f90	698	private
gauss2Dfit	subroutine	procedure	utils/simple_gauss2Dfit.f90	109	public
gauwfun	function	procedure	utils/math/simple_math.f90	1160	private
gcd	function	procedure	utils/math/simple_math.f90	1074	private
gen_c1	subroutine	procedure	main/simple_sym.f90	800	private
gen_job_descr	subroutine	procedure	utils/structs/simple_chash.f90	195	private
generate_array_script	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	446	private
generate_script_1	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	509	private
generate_script_2	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	553	private
generate_script_3	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	673	private
generate_script_4	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	607	private
generate_scripts_subprojects	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	258	private
geodesic_dist_trace	function	procedure	main/ori/simple_ori.f90	1636	private
getAttribute	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9167	public
getAttributeNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9564	public
getAttributeNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9378	public
getAttributeNodeNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9820	public
getAttribute_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9146	private
getAttributes	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1257	public
getAttributesNS_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9540	private
getBase	function	procedure	extlibs/xml/common/m_common_attrs.F90	937	private
getBaseURI	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4248	public
getBase_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	926	private
getElementById	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7605	public
getElementsByTagName	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6748	public
getElementsByTagNameNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7458	public
getEntities	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8965	public
getEntityByIndex	function	procedure	extlibs/xml/common/m_common_entities.F90	91	public
getEntityByName	function	procedure	extlibs/xml/common/m_common_entities.F90	107	public
getEntityNameByIndex	function	procedure	extlibs/xml/common/m_common_entities.F90	99	private
getFoX_checks	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5885	public
getGCstate	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8819	private
getImplementation	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6041	public
getInputEncoding	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7930	public
getInputEncoding_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7919	private
getInternalSubset	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9050	public
getInternalSubset_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9035	private
getIsId_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	875	private
getLength	function	procedure	extlibs/xml/common/m_common_attrs.F90	185	private
getLength_characterdata	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10452	private
getLength_nl	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4894	private
getLength_nnm	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5243	private
getLocalName	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3564	public
getLocalName_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3548	private
getNamedItem	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4966	public
getNamedItemNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5265	public
getNamespaceURI	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3322	public
getNamespaceURI_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3306	private
getNodePath	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4336	public
getNodeValue	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1017	public
getNodeValue_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1000	private
getNotations	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8997	public
getNumberOfPrefixes	function	procedure	extlibs/xml/common/m_common_namespaces.F90	795	public
getOwnerDocument	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1281	public
getParameter	function	procedure	extlibs/xml/dom/m_dom_dom.F90	614	public
getParameterNames	function	procedure	extlibs/xml/dom/m_dom_dom.F90	700	public
getPrefix	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3404	public
getPrefixByIndex	function	procedure	extlibs/xml/common/m_common_namespaces.F90	802	public
getPrefixIndex	function	procedure	extlibs/xml/common/m_common_namespaces.F90	779	private
getPrefix_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3388	private
getTarget	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11138	public
getTarget_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11125	private
getTextContent	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4068	public
getTextContent_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4056	private
getType_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	691	private
getType_by_index_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	678	private
getType_by_keyname	function	procedure	extlibs/xml/common/m_common_attrs.F90	725	private
getType_by_keyname_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	709	private
getURIofDefaultNS	function	procedure	extlibs/xml/common/m_common_namespaces.F90	738	private
getURIofPrefixedNS	function	procedure	extlibs/xml/common/m_common_namespaces.F90	811	private
getValue_DOM	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10370	private
getWhitespaceHandling	function	procedure	extlibs/xml/common/m_common_attrs.F90	898	private
getXds	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8797	public
getXmlEncoding	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7880	public
getXmlEncoding_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7869	private
getXmlVersion	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7782	public
getXmlVersionEnum	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8776	private
get_1	function	procedure	utils/structs/simple_chash.f90	418	private
get_2	function	procedure	utils/structs/simple_chash.f90	435	private
get_2Dshift	function	procedure	main/ori/simple_ori.f90	888	private
get_3Dshift	function	procedure	main/ori/simple_ori.f90	900	private
get_Whalf	function	procedure	main/interp/simple_winfuns.f90	136	private
get_all_subgrps_descr	function	procedure	main/simple_sym.f90	270	private
get_att_index_pointer	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	363	private
get_att_type_enum	function	procedure	extlibs/xml/common/m_common_element.F90	1574	private
get_attdecl_by_index	function	procedure	extlibs/xml/common/m_common_element.F90	1487	private
get_attdecl_by_name	function	procedure	extlibs/xml/common/m_common_element.F90	1500	private
get_attlist_size	function	procedure	extlibs/xml/common/m_common_element.F90	1476	private
get_attribute	function	procedure	extlibs/xml/common/m_common_element.F90	859	private
get_axis_angle	subroutine	procedure	main/ori/simple_ori.f90	1305	private
get_chars_from_array	subroutine	procedure	extlibs/json/json_value_module.f90	8648	private
get_chars_from_array	subroutine	procedure	extlibs/json/json_value_module.f90	8784	private
get_ctfvars	function	procedure	main/ori/simple_ori.f90	1278	private
get_ctfvars	function	procedure	main/ctf/simple_ctf.f90	83	private
get_current_line_from_file_sequential	subroutine	procedure	extlibs/json/json_value_module.f90	9366	private
get_current_line_from_file_stream	subroutine	procedure	extlibs/json/json_value_module.f90	9408	private
get_double_from_array	subroutine	procedure	extlibs/json/json_value_module.f90	8144	private
get_element	function	procedure	extlibs/xml/common/m_common_element.F90	223	private
get_euler	function	procedure	main/ori/simple_ori.f90	738	private
get_eullims	function	procedure	main/simple_sym.f90	202	private
get_fbody_1	function	procedure	fileio/simple_fileio.f90	478	public
get_fbody_2	function	procedure	fileio/simple_fileio.f90	498	public
get_find	function	procedure	main/image/simple_ftiter.f90	147	private
get_find_at_crit	function	procedure	utils/math/simple_math_ft.f90	187	private
get_find_at_res	function	procedure	utils/math/simple_math_ft.f90	173	private
get_fpath	function	procedure	fileio/simple_fileio.f90	608	public
get_int_from_array	subroutine	procedure	extlibs/json/json_value_module.f90	7913	private
get_jobs_status	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	197	private
get_json_core_in_file	subroutine	procedure	extlibs/json/json_file_module.f90	442	private
get_key	function	procedure	utils/structs/simple_hash.f90	356	private
get_key	function	procedure	utils/structs/simple_chash.f90	461	private
get_key	function	procedure	extlibs/xml/common/m_common_attrs.F90	450	private
get_key_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	241	private
get_key_index_ns	function	procedure	extlibs/xml/common/m_common_attrs.F90	260	private
get_key_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	437	private
get_keys	function	procedure	utils/structs/simple_hash.f90	377	private
get_keys	function	procedure	main/ori/simple_ori.f90	1352	private
get_last_string	function	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	86	private
get_ldim	function	procedure	main/image/simple_ftiter.f90	180	private
get_lfny	function	procedure	main/image/simple_ftiter.f90	156	private
get_lhp	function	procedure	main/image/simple_ftiter.f90	131	private
get_llp	function	procedure	main/image/simple_ftiter.f90	139	private
get_localName_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	594	private
get_localName_by_keyname	function	procedure	extlibs/xml/common/m_common_attrs.F90	665	private
get_localname_by_keyname_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	653	private
get_logical_from_array	subroutine	procedure	extlibs/json/json_value_module.f90	8372	private
get_lp	function	procedure	main/image/simple_ftiter.f90	164	private
get_mat	function	procedure	main/ori/simple_ori.f90	790	private
get_normal	function	procedure	main/ori/simple_ori.f90	782	private
get_nsURI_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	572	private
get_nsURI_by_keyname	function	procedure	extlibs/xml/common/m_common_attrs.F90	620	private
get_nsURI_by_keyname_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	607	private
get_nsubgrp	function	procedure	main/simple_sym.f90	222	private
get_open_funits	subroutine	procedure	fileio/simple_fileio.f90	354	public
get_pgrp	function	procedure	main/simple_sym.f90	215	private
get_pixel_pos	subroutine	procedure	utils/math/simple_math.f90	994	private
get_prefix_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	585	private
get_prefix_by_keyname	function	procedure	extlibs/xml/common/m_common_attrs.F90	642	private
get_prefix_by_keyname_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	630	private
get_relative_path	function	procedure	fileio/simple_fileio.f90	1123	public
get_resarr	function	procedure	utils/math/simple_math_ft.f90	212	private
get_spat_freq	function	procedure	main/image/simple_ftiter.f90	172	private
get_static	subroutine	procedure	utils/structs/simple_chash.f90	444	private
get_static	subroutine	procedure	main/ori/simple_ori.f90	839	private
get_str	function	procedure	main/ori/simple_ori.f90	831	private
get_stream_done_stack	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	1115	private
get_stream_fail_stack	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	1123	private
get_string_lengths	subroutine	procedure	extlibs/json/json_value_module.f90	1383	private
get_subgrp	function	procedure	main/simple_sym.f90	229	private
get_subgrp_descr	function	procedure	main/simple_sym.f90	258	private
get_sym_rmat	subroutine	procedure	main/simple_sym.f90	452	private
get_symori	subroutine	procedure	main/simple_sym.f90	444	private
get_top_elstack	function	procedure	extlibs/xml/common/m_common_elstack.F90	149	private
get_value_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	419	private
get_value_by_index_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	403	private
get_value_by_key	function	procedure	extlibs/xml/common/m_common_attrs.F90	298	private
get_value_by_key_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	281	private
get_value_by_key_ns	function	procedure	extlibs/xml/common/m_common_attrs.F90	339	private
get_value_by_key_ns_len	function	procedure	extlibs/xml/common/m_common_attrs.F90	320	private
getchildNodes	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1137	public
getdata	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11328	public
getdata_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11312	private
getdocType	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5900	public
getdocumentElement	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5970	public
getdocumentURI	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7983	public
getdocumentURI_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7970	private
getdomConfig	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8383	public
getevensym	subroutine	procedure	main/simple_sym.f90	1847	private
getfirstChild	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1161	public
getillFormed	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10961	public
getisElementContentWhitespace	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11251	public
getisId_DOM	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10262	private
getlastChild	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1185	public
getliveNodeLists	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8890	public
getname	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11483	public
getname_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11469	private
getnamespaceNodes	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11642	public
getnextSibling	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1233	public
getnodeName	function	procedure	extlibs/xml/dom/m_dom_dom.F90	972	public
getnodeName_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	961	private
getnodeType	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1089	public
getnotationName	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10919	public
getnotationName_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10906	private
getownerElement	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10334	public
getparentNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1113	public
getpreviousSibling	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1209	public
getpublicId	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11540	public
getpublicId_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11525	private
getreadonly	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4729	public
getspecified	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10190	public
getstrictErrorChecking	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8059	public
getstringValue	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11046	public
getstringValue_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11033	private
getsystemId	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11598	public
getsystemId_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11583	private
gettagName	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9106	public
gettagName_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9093	private
getter_1	subroutine	procedure	utils/structs/simple_hash.f90	332	private
getter_1	subroutine	procedure	main/ori/simple_ori.f90	846	private
getter_2	subroutine	procedure	utils/structs/simple_hash.f90	340	private
getter_2	subroutine	procedure	main/ori/simple_ori.f90	854	private
getter_3	subroutine	procedure	utils/structs/simple_hash.f90	348	private
getter_3	subroutine	procedure	main/ori/simple_ori.f90	871	private
getxmlStandalone	function	procedure	extlibs/xml/dom/m_dom_dom.F90	7710	public
great_circle_samples	function	procedure	utils/math/simple_math.f90	1132	private
greedy_sampling_1	function	procedure	utils/math/simple_rnd.f90	225	private
greedy_sampling_2	function	procedure	utils/math/simple_rnd.f90	238	private
hac_1d	subroutine	procedure	utils/math/simple_math.f90	440	private
hac_1d_fast	subroutine	procedure	utils/math/simple_math.f90	539	private
hac_med_thres	subroutine	procedure	utils/math/simple_math.f90	342	private
haloween_end	subroutine	procedure	utils/simple_jiffys.f90	102	private
hann_apod	function	procedure	main/interp/simple_winfuns.f90	198	private
hann_instr	function	procedure	main/interp/simple_winfuns.f90	211	private
hardedge_1	function	procedure	main/interp/simple_edges_sqwins.f90	39	private
hardedge_2	function	procedure	main/interp/simple_edges_sqwins.f90	46	private
hardedge_3	function	procedure	main/interp/simple_edges_sqwins.f90	53	private
hardedge_4	function	procedure	main/interp/simple_edges_sqwins.f90	61	private
hardedge_inner_1	function	procedure	main/interp/simple_edges_sqwins.f90	102	private
hardedge_inner_2	function	procedure	main/interp/simple_edges_sqwins.f90	109	private
hardedge_inner_3	function	procedure	main/interp/simple_edges_sqwins.f90	118	private
hardedge_inner_4	function	procedure	main/interp/simple_edges_sqwins.f90	125	private
hardedge_r2_2d	function	procedure	main/interp/simple_edges_sqwins.f90	70	private
hardedge_r2_3d	function	procedure	main/interp/simple_edges_sqwins.f90	85	private
hasAttribute	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9983	public
hasAttributeNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10028	public
hasAttributes	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3139	public
hasChildNodes	function	procedure	extlibs/xml/dom/m_dom_dom.F90	2927	public
hasFeature	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5562	public
has_key	function	procedure	extlibs/xml/common/m_common_attrs.F90	197	private
has_key_ns	function	procedure	extlibs/xml/common/m_common_attrs.F90	217	private
has_subgrp	function	procedure	main/simple_sym.f90	241	private
hash2str	function	procedure	utils/structs/simple_hash.f90	388	private
hermitian_eigh_z	subroutine	procedure	utils/math/simple_linalg.f90	1154	private
hermitian_invert_dp	subroutine	procedure	utils/math/simple_linalg.f90	1053	private
hermitian_invert_z	subroutine	procedure	utils/math/simple_linalg.f90	1118	private
hermitian_solve_dp	subroutine	procedure	utils/math/simple_linalg.f90	1023	private
hermitian_solve_z	subroutine	procedure	utils/math/simple_linalg.f90	1085	private
hist	subroutine	procedure	extlibs/gnufor/gnufor2.f90	945	private
hough_line	subroutine	procedure	utils/simple_segmentation.f90	686	public
hpsort_1	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	66	private
hpsort_2	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	115	private
hpsort_3	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	154	private
hpsort_4	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	199	private
hpsort_5	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	239	private
hpsort_6	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	287	private
image_1	subroutine	procedure	extlibs/gnufor/gnufor2.f90	738	private
image_2	subroutine	procedure	extlibs/gnufor/gnufor2.f90	595	private
image_3	subroutine	procedure	extlibs/gnufor/gnufor2.f90	491	private
image_4	subroutine	procedure	extlibs/gnufor/gnufor2.f90	353	private
image_5	subroutine	procedure	extlibs/gnufor/gnufor2.f90	220	private
image_6	subroutine	procedure	extlibs/gnufor/gnufor2.f90	83	private
imat2file	subroutine	procedure	fileio/simple_fileio.f90	1008	public
importNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	6908	public
in_error	function	procedure	extlibs/xml/common/m_common_error.F90	179	public
init	subroutine	procedure	main/ctf/simple_ctf.f90	73	private
initNamespaceDictionary	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	71	private
init_attribute_list	subroutine	procedure	extlibs/xml/common/m_common_element.F90	788	private
init_dict	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	961	private
init_element_list	subroutine	procedure	extlibs/xml/common/m_common_element.F90	171	private
init_elstack	subroutine	procedure	extlibs/xml/common/m_common_elstack.F90	51	private
init_entity_list	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	138	private
init_error_stack	subroutine	procedure	extlibs/xml/common/m_common_error.F90	122	public
init_refine3D_iteration	subroutine	procedure	main/simple_abinitio_controller.f90	196	private
init_string_list	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	36	private
initialize_json_core	function	procedure	extlibs/json/json_value_module.f90	828	private
initialize_json_core_in_file	subroutine	procedure	extlibs/json/json_file_module.f90	378	private
initialize_json_file	function	procedure	extlibs/json/json_file_module.f90	465	private
initialize_json_file_v2	function	procedure	extlibs/json/json_file_module.f90	514	private
inplrotdist	function	procedure	main/ori/simple_ori.f90	1666	private
insert	subroutine	procedure	utils/math/simple_ran_tabu.f90	60	private
insertBefore	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1341	public
insertData	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10624	public
instr	function	procedure	main/interp/simple_kbinterpol.f90	294	private
int2str	function	procedure	utils/simple_string.f90	71	private
int2str	function	procedure	utils/simple_string_utils.f90	431	private
int2str_pad	function	procedure	utils/simple_string_utils.f90	441	private
integer_to_string	subroutine	procedure	extlibs/json/json_string_utilities.f90	83	public
irnd	function	procedure	utils/math/simple_ran_tabu.f90	94	private
irnd_gasdev	function	procedure	utils/math/simple_rnd.f90	347	private
irnd_gau	function	procedure	utils/math/simple_ran_tabu.f90	120	private
irnd_pair	subroutine	procedure	utils/math/simple_ran_tabu.f90	106	private
irnd_uni	function	procedure	utils/math/simple_rnd.f90	318	private
irnd_uni_pair	function	procedure	utils/math/simple_rnd.f90	336	private
is	function	procedure	utils/math/simple_ran_tabu.f90	71	private
isCharData	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10442	private
isDeclared_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	809	private
isDeclared_by_key	function	procedure	extlibs/xml/common/m_common_attrs.F90	825	private
isDeclared_by_keyNS	function	procedure	extlibs/xml/common/m_common_attrs.F90	843	private
isDefaultNSInForce	function	procedure	extlibs/xml/common/m_common_namespaces.F90	766	public
isDefaultNamespace	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3792	public
isEqualNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3594	public
isPrefixInForce	function	procedure	extlibs/xml/common/m_common_namespaces.F90	748	public
isSameNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3761	public
isSpecified_by_index	function	procedure	extlibs/xml/common/m_common_attrs.F90	744	private
isSpecified_by_key	function	procedure	extlibs/xml/common/m_common_attrs.F90	760	private
isSpecified_by_keyNS	function	procedure	extlibs/xml/common/m_common_attrs.F90	790	private
isSupported	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3284	public
is_child_of_callback	subroutine	procedure	extlibs/json/json_value_module.f90	2492	private
is_empty_elstack	function	procedure	extlibs/xml/common/m_common_elstack.F90	100	private
is_even_2	function	procedure	utils/simple_is_check_assert.f90	50	public
is_external_entity	function	procedure	extlibs/xml/common/m_common_entities.F90	310	private
is_particle	function	procedure	main/ori/simple_ori.f90	732	private
is_unparsed_entity_	function	procedure	extlibs/xml/common/m_common_entities.F90	301	private
is_unparsed_entity_from_list	function	procedure	extlibs/xml/common/m_common_entities.F90	284	private
isthere	function	procedure	utils/structs/simple_chash.f90	371	private
isthere	function	procedure	main/ori/simple_ori.f90	998	private
item_nl	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4755	private
item_nnm	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5217	private
jacobi_dp	subroutine	procedure	utils/math/simple_linalg.f90	406	private
jacobi_sp	subroutine	procedure	utils/math/simple_linalg.f90	384	private
join_imgarrs	function	procedure	utils/simple_imgarr_utils.f90	81	public
json_add_double_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3509	private
json_add_double_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3947	private
json_add_integer_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3422	private
json_add_integer_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3819	private
json_add_logical_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3596	private
json_add_logical_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3883	private
json_add_member_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3336	private
json_add_string_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3683	private
json_add_string_by_path_path_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	3773	private
json_add_string_by_path_value_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	3796	private
json_add_string_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	4014	private
json_add_string_vec_by_path_path_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	4157	private
json_add_string_vec_by_path_value_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	4128	private
json_array_callback_func	subroutine	procedure	extlibs/json/json_value_module.f90	775	private
json_check_all_for_duplicate_keys	subroutine	procedure	extlibs/json/json_value_module.f90	5159	private
json_check_children_for_duplicate_keys	subroutine	procedure	extlibs/json/json_value_module.f90	5036	private
json_check_for_errors	subroutine	procedure	extlibs/json/json_value_module.f90	1914	private
json_clear_exceptions	subroutine	procedure	extlibs/json/json_value_module.f90	1820	private
json_clone	subroutine	procedure	extlibs/json/json_value_module.f90	1151	private
json_count	function	procedure	extlibs/json/json_value_module.f90	4722	private
json_create_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	6238	private
json_failed	function	procedure	extlibs/json/json_value_module.f90	1986	private
json_file_add_double	subroutine	procedure	extlibs/json/json_file_module.f90	1586	private
json_file_add_double_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1628	private
json_file_add_integer	subroutine	procedure	extlibs/json/json_file_module.f90	1502	private
json_file_add_integer_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1544	private
json_file_add_logical	subroutine	procedure	extlibs/json/json_file_module.f90	1670	private
json_file_add_logical_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1712	private
json_file_add_object	subroutine	procedure	extlibs/json/json_file_module.f90	1460	private
json_file_add_string	subroutine	procedure	extlibs/json/json_file_module.f90	1754	private
json_file_add_string_path_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	1803	private
json_file_add_string_value_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	1830	private
json_file_add_string_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1857	private
json_file_add_string_vec_path_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	1916	private
json_file_add_string_vec_vec_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	1945	private
json_file_check_for_errors	subroutine	procedure	extlibs/json/json_file_module.f90	316	private
json_file_clear_exceptions	subroutine	procedure	extlibs/json/json_file_module.f90	340	private
json_file_destroy	subroutine	procedure	extlibs/json/json_file_module.f90	545	private
json_file_failed	function	procedure	extlibs/json/json_file_module.f90	300	private
json_file_get_alloc_string_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1416	private
json_file_get_double	subroutine	procedure	extlibs/json/json_file_module.f90	1186	private
json_file_get_double_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1224	private
json_file_get_integer	subroutine	procedure	extlibs/json/json_file_module.f90	1110	private
json_file_get_integer_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1148	private
json_file_get_logical	subroutine	procedure	extlibs/json/json_file_module.f90	1262	private
json_file_get_logical_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1300	private
json_file_get_object	subroutine	procedure	extlibs/json/json_file_module.f90	1072	private
json_file_get_root	subroutine	procedure	extlibs/json/json_file_module.f90	892	private
json_file_get_string	subroutine	procedure	extlibs/json/json_file_module.f90	1339	private
json_file_get_string_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1377	private
json_file_load	subroutine	procedure	extlibs/json/json_file_module.f90	618	private
json_file_load_from_string	subroutine	procedure	extlibs/json/json_file_module.f90	645	private
json_file_move_pointer	subroutine	procedure	extlibs/json/json_file_module.f90	571	private
json_file_print_1	subroutine	procedure	extlibs/json/json_file_module.f90	696	private
json_file_print_2	subroutine	procedure	extlibs/json/json_file_module.f90	730	private
json_file_print_error_message	subroutine	procedure	extlibs/json/json_file_module.f90	355	private
json_file_print_to_console	subroutine	procedure	extlibs/json/json_file_module.f90	679	private
json_file_print_to_string	subroutine	procedure	extlibs/json/json_file_module.f90	758	private
json_file_remove	subroutine	procedure	extlibs/json/json_file_module.f90	2217	private
json_file_rename	subroutine	procedure	extlibs/json/json_file_module.f90	995	private
json_file_rename_name_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	1052	private
json_file_rename_path_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	1033	private
json_file_traverse	subroutine	procedure	extlibs/json/json_file_module.f90	2197	private
json_file_update_integer	subroutine	procedure	extlibs/json/json_file_module.f90	1980	private
json_file_update_logical	subroutine	procedure	extlibs/json/json_file_module.f90	2023	private
json_file_update_real	subroutine	procedure	extlibs/json/json_file_module.f90	2066	private
json_file_update_string	subroutine	procedure	extlibs/json/json_file_module.f90	2109	private
json_file_update_string_name_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	2151	private
json_file_update_string_val_ascii	subroutine	procedure	extlibs/json/json_file_module.f90	2172	private
json_file_valid_path	function	procedure	extlibs/json/json_file_module.f90	959	private
json_file_valid_path_op	function	procedure	extlibs/json/json_file_module.f90	909	private
json_file_variable_info	subroutine	procedure	extlibs/json/json_file_module.f90	780	private
json_file_variable_matrix_info	subroutine	procedure	extlibs/json/json_file_module.f90	830	private
json_get_alloc_string_vec	subroutine	procedure	extlibs/json/json_value_module.f90	8750	private
json_get_alloc_string_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8835	private
json_get_array	subroutine	procedure	extlibs/json/json_value_module.f90	8899	private
json_get_array_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	9011	private
json_get_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	6181	private
json_get_by_path_default	subroutine	procedure	extlibs/json/json_value_module.f90	6473	private
json_get_by_path_jsonpath_bracket	subroutine	procedure	extlibs/json/json_value_module.f90	7029	private
json_get_by_path_rfc6901	subroutine	procedure	extlibs/json/json_value_module.f90	6818	private
json_get_double	subroutine	procedure	extlibs/json/json_value_module.f90	7995	private
json_get_double_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8047	private
json_get_double_vec	subroutine	procedure	extlibs/json/json_value_module.f90	8118	private
json_get_double_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8173	private
json_get_integer	subroutine	procedure	extlibs/json/json_value_module.f90	7769	private
json_get_integer_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	7821	private
json_get_integer_vec	subroutine	procedure	extlibs/json/json_value_module.f90	7887	private
json_get_integer_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	7942	private
json_get_logical	subroutine	procedure	extlibs/json/json_value_module.f90	8233	private
json_get_logical_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8275	private
json_get_logical_vec	subroutine	procedure	extlibs/json/json_value_module.f90	8346	private
json_get_logical_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8401	private
json_get_next	subroutine	procedure	extlibs/json/json_value_module.f90	4775	private
json_get_parent	subroutine	procedure	extlibs/json/json_value_module.f90	4749	private
json_get_path	subroutine	procedure	extlibs/json/json_value_module.f90	7442	private
json_get_previous	subroutine	procedure	extlibs/json/json_value_module.f90	4801	private
json_get_string	subroutine	procedure	extlibs/json/json_value_module.f90	8454	private
json_get_string_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8549	private
json_get_string_vec	subroutine	procedure	extlibs/json/json_value_module.f90	8622	private
json_get_string_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8685	private
json_get_tail	subroutine	procedure	extlibs/json/json_value_module.f90	4828	private
json_info	subroutine	procedure	extlibs/json/json_value_module.f90	1267	private
json_info_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	1456	private
json_initialize	subroutine	procedure	extlibs/json/json_value_module.f90	885	private
json_matrix_info	subroutine	procedure	extlibs/json/json_value_module.f90	1561	private
json_matrix_info_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	1680	private
json_parse_file	subroutine	procedure	extlibs/json/json_value_module.f90	9099	private
json_parse_string	subroutine	procedure	extlibs/json/json_value_module.f90	9205	private
json_print_error_message	subroutine	procedure	extlibs/json/json_value_module.f90	10740	private
json_print_to_filename	subroutine	procedure	extlibs/json/json_value_module.f90	5710	private
json_print_to_unit	subroutine	procedure	extlibs/json/json_value_module.f90	5683	private
json_print_value_fast	subroutine	procedure	extlibs/json/json_value_module.f90	5294	private
json_print_value_fast_impl	subroutine	procedure	extlibs/json/json_value_module.f90	5344	private
json_rename_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	6328	private
json_rename_by_path_name_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	6391	private
json_rename_by_path_path_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	6410	private
json_string_info	subroutine	procedure	extlibs/json/json_value_module.f90	1296	private
json_throw_exception	subroutine	procedure	extlibs/json/json_value_module.f90	1846	private
json_traverse	subroutine	procedure	extlibs/json/json_value_module.f90	8950	private
json_traverse_callback_func	subroutine	procedure	extlibs/json/json_value_module.f90	785	private
json_update_double	subroutine	procedure	extlibs/json/json_value_module.f90	2884	private
json_update_integer	subroutine	procedure	extlibs/json/json_value_module.f90	2946	private
json_update_logical	subroutine	procedure	extlibs/json/json_value_module.f90	2822	private
json_update_string	subroutine	procedure	extlibs/json/json_value_module.f90	3008	private
json_update_string_name_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	3074	private
json_update_string_val_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	3098	private
json_valid_path	function	procedure	extlibs/json/json_value_module.f90	6137	private
json_value_add_double	subroutine	procedure	extlibs/json/json_value_module.f90	4191	private
json_value_add_double_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4238	private
json_value_add_integer	subroutine	procedure	extlibs/json/json_value_module.f90	4334	private
json_value_add_integer_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4381	private
json_value_add_logical	subroutine	procedure	extlibs/json/json_value_module.f90	4434	private
json_value_add_logical_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4481	private
json_value_add_member	subroutine	procedure	extlibs/json/json_value_module.f90	3122	private
json_value_add_null	subroutine	procedure	extlibs/json/json_value_module.f90	4289	private
json_value_add_string	subroutine	procedure	extlibs/json/json_value_module.f90	4534	private
json_value_add_string_name_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	4580	private
json_value_add_string_val_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	4600	private
json_value_add_string_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4625	private
json_value_add_string_vec_name_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	4677	private
json_value_add_string_vec_val_ascii	subroutine	procedure	extlibs/json/json_value_module.f90	4697	private
json_value_clone_func	subroutine	procedure	extlibs/json/json_value_module.f90	1175	private
json_value_create	subroutine	procedure	extlibs/json/json_value_module.f90	2016	private
json_value_create_array	subroutine	procedure	extlibs/json/json_value_module.f90	9874	private
json_value_create_double	subroutine	procedure	extlibs/json/json_value_module.f90	9675	private
json_value_create_integer	subroutine	procedure	extlibs/json/json_value_module.f90	9626	private
json_value_create_logical	subroutine	procedure	extlibs/json/json_value_module.f90	9578	private
json_value_create_null	subroutine	procedure	extlibs/json/json_value_module.f90	9777	private
json_value_create_object	subroutine	procedure	extlibs/json/json_value_module.f90	9827	private
json_value_create_string	subroutine	procedure	extlibs/json/json_value_module.f90	9724	private
json_value_destroy	subroutine	procedure	extlibs/json/json_value_module.f90	2049	private
json_value_get_child	subroutine	procedure	extlibs/json/json_value_module.f90	4920	private
json_value_get_child_by_index	subroutine	procedure	extlibs/json/json_value_module.f90	4851	private
json_value_get_child_by_name	subroutine	procedure	extlibs/json/json_value_module.f90	4948	private
json_value_insert_after	subroutine	procedure	extlibs/json/json_value_module.f90	3218	private
json_value_insert_after_child_by_index	subroutine	procedure	extlibs/json/json_value_module.f90	3301	private
json_value_is_child_of	function	procedure	extlibs/json/json_value_module.f90	2471	private
json_value_print	subroutine	procedure	extlibs/json/json_value_module.f90	5743	private
json_value_remove	subroutine	procedure	extlibs/json/json_value_module.f90	2149	private
json_value_remove_if_present	subroutine	procedure	extlibs/json/json_value_module.f90	2778	private
json_value_rename	subroutine	procedure	extlibs/json/json_value_module.f90	1778	private
json_value_replace	subroutine	procedure	extlibs/json/json_value_module.f90	2231	private
json_value_reverse	subroutine	procedure	extlibs/json/json_value_module.f90	2263	private
json_value_swap	subroutine	procedure	extlibs/json/json_value_module.f90	2328	private
json_value_to_string	subroutine	procedure	extlibs/json/json_value_module.f90	5254	private
json_value_to_string_fast	subroutine	procedure	extlibs/json/json_value_module.f90	5274	private
json_value_validate	subroutine	procedure	extlibs/json/json_value_module.f90	2528	private
kb_apod	function	procedure	main/interp/simple_winfuns.f90	234	private
kb_instr	function	procedure	main/interp/simple_winfuns.f90	248	private
kill	subroutine	procedure	utils/simple_string.f90	537	private
kill	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	1181	private
kill	subroutine	procedure	utils/math/simple_ran_tabu.f90	266	private
kill	subroutine	procedure	utils/structs/simple_hash.f90	453	private
kill	subroutine	procedure	utils/structs/simple_chash.f90	664	private
kill	subroutine	procedure	main/simple_sym.f90	1877	private
kill	subroutine	procedure	main/ori/simple_ori.f90	1695	private
kill	subroutine	procedure	main/stream/simple_stream_watcher.f90	396	private
kill_candidate_buffer	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	120	private
kill_candidate_store	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	170	private
kill_chash	subroutine	procedure	main/ori/simple_ori.f90	1690	private
kill_hash	subroutine	procedure	main/ori/simple_ori.f90	1685	private
killimgbatch	subroutine	procedure	main/strategies/search/simple_matcher_ptcl_io.f90	53	private
kmlAddBalloonStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	549	private
kmlAddBgColor_c	subroutine	procedure	extlibs/xml/wkml/m_wkml_color.F90	112	private
kmlAddBgColor_h	subroutine	procedure	extlibs/xml/wkml/m_wkml_color.F90	122	private
kmlAddChart_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_chart.F90	64	private
kmlAddChart_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_chart.F90	20	private
kmlAddColor_c	subroutine	procedure	extlibs/xml/wkml/m_wkml_color.F90	82	private
kmlAddColor_h	subroutine	procedure	extlibs/xml/wkml/m_wkml_color.F90	92	private
kmlAddCoordinates_array_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1054	private
kmlAddCoordinates_array_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1010	private
kmlAddIcon_href	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	749	private
kmlAddIcon_refresh	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	759	private
kmlAddIcon_view	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	771	private
kmlAddInnerBoundary_1d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	1102	private
kmlAddInnerBoundary_1d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	1062	private
kmlAddInnerBoundary_2d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	1123	private
kmlAddInnerBoundary_2d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	1083	private
kmlAddLabelStyle_color	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	535	private
kmlAddLabelStyle_scale	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	524	private
kmlAddLegend	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	733	public
kmlAddLineStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	501	private
kmlAddListStyle_bgcolor	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	561	private
kmlAddNamespace	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	95	private
kmlAddPointStyle_s_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	213	private
kmlAddPointStyle_s_int	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	161	private
kmlAddPointStyle_s_none_hd_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	141	private
kmlAddPointStyle_s_none_hd_int	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	101	private
kmlAddPointStyle_s_none_hd_none	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	82	private
kmlAddPointStyle_s_none_hd_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	121	private
kmlAddPointStyle_s_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	187	private
kmlAddPoint_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	87	private
kmlAddPoint_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	70	private
kmlAddScale_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	660	private
kmlAddScale_int	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	642	private
kmlAddScale_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	651	private
kmlAddTextColor_c	subroutine	procedure	extlibs/xml/wkml/m_wkml_color.F90	135	private
kmlAddTextColor_h	subroutine	procedure	extlibs/xml/wkml/m_wkml_color.F90	145	private
kmlAddaddress	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	199	private
kmlAddaltitude	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	499	private
kmlAddaltitudeMode	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	249	private
kmlAddbegin	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	297	private
kmlAddcolorMode	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	316	private
kmlAddcookie	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	338	private
kmlAddcoordinates_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	733	private
kmlAddcoordinates_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	718	private
kmlAdddescription_ch	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	216	private
kmlAdddescription_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	237	private
kmlAdddescription_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	225	private
kmlAdddrawOrder	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	365	private
kmlAddeast	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	392	private
kmlAddend	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	306	private
kmlAddextrude	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	139	private
kmlAddfill	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	150	private
kmlAddflyToView	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	191	private
kmlAddheading	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	411	private
kmlAddhref	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	435	private
kmlAddkey	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	450	private
kmlAddlatitude_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	479	private
kmlAddlatitude_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	489	private
kmlAddlinkDescription	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	356	private
kmlAddlinkName	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	347	private
kmlAddlistItemType	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	517	private
kmlAddlongitude_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	459	private
kmlAddlongitude_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	469	private
kmlAddmaxAltitude	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	527	private
kmlAddmaxFadeExtent	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	585	private
kmlAddmaxLodPixels	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	565	private
kmlAddmessage	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	329	private
kmlAddminAltitude	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	536	private
kmlAddminFadeExtent	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	575	private
kmlAddminLodPixels	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	554	private
kmlAddminRefreshPeriod	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	508	private
kmlAddname	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	108	private
kmlAddnorth	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	374	private
kmlAddopen	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	117	private
kmlAddoutline	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	128	private
kmlAddphoneNumber	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	207	private
kmlAddrange	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	594	private
kmlAddrefreshInterval	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	271	private
kmlAddrefreshMode	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	263	private
kmlAddrefreshVisibility	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	183	private
kmlAddrequest	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	621	private
kmlAddroll	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	612	private
kmlAddrotation	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	634	private
kmlAddsouth	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	383	private
kmlAddstate	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	808	private
kmlAddstyleUrl	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1002	private
kmlAddtargetHref	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	671	private
kmlAddtessellate	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	172	private
kmlAddtilt	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	603	private
kmlAddviewBoundScale	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	681	private
kmlAddviewRefreshTime	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	287	private
kmlAddviewrefreshMode	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	279	private
kmlAddvisibility	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	161	private
kmlAddwest	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	401	private
kmlAddwhen	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	694	private
kmlAddwidth	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	703	private
kmlCloseAddressDetail	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	823	private
kmlCloseBalloonStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	600	private
kmlCloseChange	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	835	private
kmlCloseColorStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	612	private
kmlCloseContainer	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	847	private
kmlCloseCreate	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	859	private
kmlCloseDelete	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	871	private
kmlCloseDocument	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	888	private
kmlCloseFeature	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	923	private
kmlCloseFolder	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	908	private
kmlCloseGeometry	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	935	private
kmlCloseGeometryCollection	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	947	private
kmlCloseGroundOverlay	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	959	private
kmlCloseIcon	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	971	private
kmlCloseIconStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	624	private
kmlCloseInnerBoundaryIs	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1525	public
kmlCloseItemIcon	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	801	private
kmlCloseLabelStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	588	private
kmlCloseLatLonAltBox	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	983	private
kmlCloseLatLonBox	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	995	private
kmlCloseLineString	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1578	public
kmlCloseLineStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	636	private
kmlCloseLinearRing	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1551	public
kmlCloseLink	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1106	private
kmlCloseListStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	576	private
kmlCloseLocation	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1118	private
kmlCloseLod	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1130	private
kmlCloseLookAt	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1142	private
kmlCloseModel	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1154	private
kmlCloseMultiGeometry	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1166	private
kmlCloseNetworkLink	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1178	private
kmlCloseNetworkLinkControl	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1190	private
kmlCloseObjArrayField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1216	private
kmlCloseObjField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1228	private
kmlCloseObject	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1204	private
kmlCloseOrientation	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1240	private
kmlCloseOverlay	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1252	private
kmlClosePair	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1264	private
kmlClosePlacemark	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1284	private
kmlClosePoint	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1297	private
kmlClosePolyStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	648	private
kmlClosePolygon	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1604	public
kmlCloseRegion	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1310	private
kmlCloseResponse	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1323	private
kmlCloseScale	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1335	private
kmlCloseSchema	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1351	private
kmlCloseSchemaField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1364	private
kmlCloseScreenOverlay	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1376	private
kmlCloseSimpleArrayField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1389	private
kmlCloseSimpleField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1403	private
kmlCloseSnippet	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1423	private
kmlCloseStatus	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1435	private
kmlCloseStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	660	public
kmlCloseStyleMap	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	672	private
kmlCloseStyleSelector	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	688	private
kmlCloseTimePrimitive	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1447	private
kmlCloseTimeSpan	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1459	private
kmlCloseTimeStamp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1471	private
kmlCloseUpdate	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1487	private
kmlCloseUrl	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1500	private
kmlClosecoordinates	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	791	private
kmlCloseouterBoundaryIs	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1513	public
kmlCreateCells_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	246	private
kmlCreateCells_longlat2_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	753	private
kmlCreateCells_longlat2_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	638	private
kmlCreateCells_longlat_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	505	private
kmlCreateCells_longlat_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	374	private
kmlCreateCells_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	121	private
kmlCreateContours_longlat2_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_contours.F90	86	private
kmlCreateContours_longlat_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_contours.F90	62	private
kmlCreateContours_old	subroutine	procedure	extlibs/xml/wkml/m_wkml_contours.F90	140	private
kmlCreateContours_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_contours.F90	38	private
kmlCreateLineStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	455	public
kmlCreateLineStyle_old	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	475	private
kmlCreateLine_1d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	746	private
kmlCreateLine_1d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	628	private
kmlCreateLine_2d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	824	private
kmlCreateLine_2d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	706	private
kmlCreateLine_seg_sh_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	566	private
kmlCreatePointStyleOld	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	237	private
kmlCreatePoints_0d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	336	private
kmlCreatePoints_0d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	117	private
kmlCreatePoints_1d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	387	private
kmlCreatePoints_1d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	168	private
kmlCreatePoints_2d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	501	private
kmlCreatePoints_2d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	284	private
kmlCreatePolygonStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	695	public
kmlCreateRGBCells_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	62	private
kmlCreateRGBCells_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	50	private
kmlEndRegion	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	1142	public
kmlGetColorHex	function	procedure	extlibs/xml/wkml/m_wkml_color.F90	172	public
kmlGetColor_byName	function	procedure	extlibs/xml/wkml/m_wkml_color.F90	195	private
kmlGetColor_index	function	procedure	extlibs/xml/wkml/m_wkml_color.F90	180	private
kmlMakeColorMap	function	procedure	extlibs/xml/wkml/m_wkml_color.F90	219	public
kmlOpenAddressDetail	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	816	private
kmlOpenBalloonStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	593	private
kmlOpenChange	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	828	private
kmlOpenColorStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	605	private
kmlOpenContainer	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	840	private
kmlOpenCreate	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	852	private
kmlOpenDelete	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	864	private
kmlOpenDocument	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	877	private
kmlOpenFeature	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	916	private
kmlOpenFolder	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	895	private
kmlOpenGeometry	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	928	private
kmlOpenGeometryCollection	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	940	private
kmlOpenGroundOverlay	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	952	private
kmlOpenIcon	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	964	private
kmlOpenIconStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	617	private
kmlOpenInnerBoundaryIs	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1518	public
kmlOpenItemIcon	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	796	private
kmlOpenLabelStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	581	private
kmlOpenLatLonAltBox	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	976	private
kmlOpenLatLonBox	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	988	private
kmlOpenLineString	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1557	public
kmlOpenLineStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	629	private
kmlOpenLinearRing	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1530	public
kmlOpenLink	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1099	private
kmlOpenListStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	569	private
kmlOpenLocation	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1111	private
kmlOpenLod	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1123	private
kmlOpenLookAt	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1135	private
kmlOpenModel	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1147	private
kmlOpenMultiGeometry	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1159	private
kmlOpenNetworkLink	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1171	private
kmlOpenNetworkLinkControl	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1183	private
kmlOpenObjArrayField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1209	private
kmlOpenObjField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1221	private
kmlOpenObject	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1196	private
kmlOpenOrientation	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1233	private
kmlOpenOuterBoundaryIs	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1506	public
kmlOpenOverlay	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1245	private
kmlOpenPair	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1257	private
kmlOpenPlacemark	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1270	private
kmlOpenPoint	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1290	private
kmlOpenPolyStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	641	private
kmlOpenPolygon	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1583	public
kmlOpenRegion	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1303	private
kmlOpenResponse	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1316	private
kmlOpenScale	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1328	private
kmlOpenSchema	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1342	private
kmlOpenSchemaField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1357	private
kmlOpenScreenOverlay	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1369	private
kmlOpenSimpleArrayField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1382	private
kmlOpenSimpleField	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1395	private
kmlOpenSnippet	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1416	private
kmlOpenStatus	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1428	private
kmlOpenStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	653	public
kmlOpenStyleMap	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	665	private
kmlOpenStyleSelector	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	681	private
kmlOpenTimePrimitive	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1440	private
kmlOpenTimeSpan	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1452	private
kmlOpenTimeStamp	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1464	private
kmlOpenUpdate	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1480	private
kmlOpenUrl	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	1493	private
kmlOpencoordinates	subroutine	procedure	extlibs/xml/wkml/m_wkml_lowlevel.F90	786	private
kmlOutputContours	subroutine	procedure	extlibs/xml/wkml/m_wkml_contours.F90	111	private
kmlSetCustomColor	subroutine	procedure	extlibs/xml/wkml/m_wkml_color.F90	159	public
kmlStartPolygon_1d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	962	private
kmlStartPolygon_1d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	864	private
kmlStartPolygon_2d_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	1018	private
kmlStartPolygon_2d_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_features.F90	919	private
kmlcreateCells3_dp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	870	private
kmlcreateCells3_sp	subroutine	procedure	extlibs/xml/wkml/m_wkml_coverage.F90	1019	private
kstwo	subroutine	procedure	utils/math/simple_stat.f90	1060	private
l1dist_dp	function	procedure	utils/math/simple_linalg.f90	877	private
l1dist_sp	function	procedure	utils/math/simple_linalg.f90	871	private
lapack_stop	subroutine	procedure	utils/math/simple_linalg.f90	1344	private
lcg	function	procedure	utils/math/simple_rnd.f90	88	private
lex_sort_1	subroutine	procedure	utils/simple_string_utils.f90	843	private
lex_sort_2	subroutine	procedure	utils/simple_string_utils.f90	947	private
lin_apod	function	procedure	main/interp/simple_winfuns.f90	271	private
lin_instr	function	procedure	main/interp/simple_winfuns.f90	284	private
list_of_ints2arr	function	procedure	utils/simple_string_utils.f90	298	private
lmat2file	subroutine	procedure	fileio/simple_fileio.f90	996	public
locate_1	function	procedure	utils/math/simple_srch_sort_loc.f90	336	private
locate_2	function	procedure	utils/math/simple_srch_sort_loc.f90	362	private
lookup	function	procedure	utils/structs/simple_chash.f90	388	private
lookupNamespaceURI	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3883	public
lookupNamespaceURI_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3834	private
lookupPrefix	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3984	public
lookupPrefix_len	function	procedure	extlibs/xml/dom/m_dom_dom.F90	3934	private
loop_lims	function	procedure	main/image/simple_ftiter.f90	213	private
lowercase	function	procedure	utils/simple_string_utils.f90	537	private
lowercase_string	function	procedure	extlibs/json/json_string_utilities.f90	766	public
make_c_and_d	subroutine	procedure	main/simple_sym.f90	868	private
make_dirnames	function	procedure	fileio/simple_fileio.f90	624	public
make_filenames	function	procedure	fileio/simple_fileio.f90	639	public
make_i_relion	subroutine	procedure	main/simple_sym.f90	972	private
make_i_spider	subroutine	procedure	main/simple_sym.f90	938	private
make_o	subroutine	procedure	main/simple_sym.f90	890	private
make_t	subroutine	procedure	main/simple_sym.f90	911	private
make_token_group	function	procedure	extlibs/xml/common/m_common_element.F90	1450	private
make_token_group_len	function	procedure	extlibs/xml/common/m_common_element.F90	1439	private
map3dshift22d	subroutine	procedure	main/ori/simple_ori.f90	1542	private
map_str_nrs	function	procedure	utils/simple_string_utils.f90	510	private
mask2inds	function	procedure	utils/math/simple_srch_sort_loc.f90	701	private
masked_swap_rm	subroutine	procedure	utils/simple_jiffys.f90	221	private
masked_swap_rs	subroutine	procedure	utils/simple_jiffys.f90	199	private
masked_swap_rv	subroutine	procedure	utils/simple_jiffys.f90	210	private
matcreate	function	procedure	main/simple_sym.f90	1888	private
materialize_seed_shift	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	196	private
matextract	function	procedure	main/simple_sym.f90	1919	private
matinv_dp	subroutine	procedure	utils/math/simple_linalg.f90	457	private
matinv_sp	subroutine	procedure	utils/math/simple_linalg.f90	428	private
matrixtocomplexdp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	2045	private
matrixtocomplexsp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1789	private
matrixtointeger	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1276	private
matrixtological	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1120	private
matrixtorealdp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1584	private
matrixtorealsp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	1430	private
matrixtostring	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	891	private
maxheap_sift_down	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	583	private
maxnloc	function	procedure	utils/math/simple_srch_sort_loc.f90	385	private
median	function	procedure	utils/math/simple_stat.f90	1343	private
median_nocopy	function	procedure	utils/math/simple_stat.f90	1367	private
medoid_from_dmat	subroutine	procedure	utils/math/simple_stat.f90	1318	private
medoid_from_smat	subroutine	procedure	utils/math/simple_stat.f90	1281	private
medoid_ranking_from_smat	subroutine	procedure	utils/math/simple_stat.f90	1303	private
merge_dmats_1	function	procedure	utils/math/simple_stat.f90	1201	private
merge_dmats_2	function	procedure	utils/math/simple_stat.f90	1219	private
merge_idx	subroutine	procedure	utils/simple_string_utils.f90	884	private
merge_idx	subroutine	procedure	utils/simple_string_utils.f90	987	private
merge_smats	function	procedure	utils/math/simple_stat.f90	1183	private
mergesort_idx	subroutine	procedure	utils/simple_string_utils.f90	874	private
mergesort_idx	subroutine	procedure	utils/simple_string_utils.f90	977	private
min3	function	procedure	utils/math/simple_srch_sort_loc.f90	425	private
minnloc	function	procedure	utils/math/simple_srch_sort_loc.f90	453	private
mirror2d	subroutine	procedure	main/ori/simple_ori.f90	1609	private
mirror3d	subroutine	procedure	main/ori/simple_ori.f90	1590	private
mnomal	function	procedure	utils/math/simple_ran_tabu.f90	132	private
mnorm_smp	function	procedure	utils/math/simple_rnd.f90	437	private
mode	subroutine	procedure	utils/math/simple_math.f90	182	private
moment_1	subroutine	procedure	utils/math/simple_stat.f90	217	private
moment_2	subroutine	procedure	utils/math/simple_stat.f90	260	private
moment_3	subroutine	procedure	utils/math/simple_stat.f90	307	private
moment_4	subroutine	procedure	utils/math/simple_stat.f90	356	private
moment_serial	subroutine	procedure	utils/math/simple_stat.f90	404	private
mostOfLineStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	422	private
mostOfPointStyle	subroutine	procedure	extlibs/xml/wkml/m_wkml_styling.F90	41	private
move_files2dir	subroutine	procedure	fileio/simple_fileio.f90	754	public
move_files_in_cwd	subroutine	procedure	fileio/simple_fileio.f90	721	public
move_key_to_front_1	subroutine	procedure	utils/structs/simple_chash.f90	341	private
move_key_to_front_2	subroutine	procedure	utils/structs/simple_chash.f90	362	private
multinomal	function	procedure	utils/math/simple_rnd.f90	204	private
my_date_and_time	function	procedure	extlibs/gnufor/gnufor2.f90	48	private
myacos_dp	function	procedure	utils/math/simple_linalg.f90	788	private
myacos_sp	function	procedure	utils/math/simple_linalg.f90	780	private
mycabs	function	procedure	utils/math/simple_math_ft.f90	225	private
name_equal	function	procedure	extlibs/json/json_value_module.f90	1068	private
name_strings_equal	function	procedure	extlibs/json/json_value_module.f90	1095	private
namespaceFixup	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	12125	public
ne_mnomal_iarr	subroutine	procedure	utils/math/simple_ran_tabu.f90	173	private
ne_ran_iarr	subroutine	procedure	utils/math/simple_ran_tabu.f90	153	private
nearest_proj_neighbors_1	subroutine	procedure	main/simple_sym.f90	595	private
nearest_proj_neighbors_2	subroutine	procedure	main/simple_sym.f90	630	private
nearest_sym_neighbors	subroutine	procedure	main/simple_sym.f90	665	private
neigh_4_3D_1	subroutine	procedure	utils/math/simple_neighs.f90	1188	private
neigh_4_3D_2	subroutine	procedure	utils/math/simple_neighs.f90	1397	private
neigh_8_1	subroutine	procedure	utils/math/simple_neighs.f90	29	private
neigh_8_2	subroutine	procedure	utils/math/simple_neighs.f90	101	private
neigh_8_3	subroutine	procedure	utils/math/simple_neighs.f90	181	private
neigh_8_3D_0	subroutine	procedure	utils/math/simple_neighs.f90	262	private
neigh_8_3D_1	subroutine	procedure	utils/math/simple_neighs.f90	293	private
neigh_8_3D_2	subroutine	procedure	utils/math/simple_neighs.f90	740	private
new	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	131	private
new	subroutine	procedure	main/simple_sym.f90	102	private
new	subroutine	procedure	main/interp/simple_kbinterpol.f90	64	private
new	subroutine	procedure	main/image/simple_ftiter.f90	68	private
newDOMConfig	function	procedure	extlibs/xml/dom/m_dom_dom.F90	708	public
new_1	subroutine	procedure	utils/structs/simple_hash.f90	81	private
new_1	subroutine	procedure	utils/structs/simple_chash.f90	96	private
new_2	subroutine	procedure	utils/structs/simple_hash.f90	90	private
new_2	subroutine	procedure	utils/structs/simple_chash.f90	105	private
new_fixed_candidate_store	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	127	private
new_ori	subroutine	procedure	main/ori/simple_ori.f90	138	private
new_ragged_candidate_store	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	148	private
nextPow2	function	procedure	utils/math/simple_math.f90	1061	private
nlines	function	procedure	fileio/simple_fileio.f90	295	public
nn_apod	function	procedure	main/interp/simple_winfuns.f90	296	private
nn_instr	function	procedure	main/interp/simple_winfuns.f90	308	private
non_max_supp	subroutine	procedure	utils/simple_segmentation.f90	546	public
norm_2_dp	function	procedure	utils/math/simple_linalg.f90	492	private
norm_2_sp	function	procedure	utils/math/simple_linalg.f90	486	private
norm_corr	function	procedure	utils/math/simple_stat.f90	900	private
norm_corr_8	function	procedure	utils/math/simple_stat.f90	914	private
norm_key	function	procedure	utils/simple_string_utils.f90	922	private
normal_solve	subroutine	procedure	utils/math/simple_linalg.f90	939	private
normalize	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	3168	public
normalizeDocument	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	11738	public
normalize_1	subroutine	procedure	utils/math/simple_stat.f90	699	private
normalize_2	subroutine	procedure	utils/math/simple_stat.f90	708	private
normalize_3	subroutine	procedure	utils/math/simple_stat.f90	717	private
normalize_4	subroutine	procedure	utils/math/simple_stat.f90	726	private
normalize_minmax_1	subroutine	procedure	utils/math/simple_stat.f90	791	private
normalize_minmax_2	subroutine	procedure	utils/math/simple_stat.f90	800	private
normalize_sigm_1	subroutine	procedure	utils/math/simple_stat.f90	736	private
normalize_sigm_2	subroutine	procedure	utils/math/simple_stat.f90	757	private
normalize_sigm_3	subroutine	procedure	utils/math/simple_stat.f90	774	private
number_of_items	function	procedure	extlibs/xml/common/m_common_elstack.F90	107	private
ori2chash	function	procedure	main/ori/simple_ori.f90	1239	private
ori2json	subroutine	procedure	main/ori/simple_ori.f90	1120	private
ori2prec	subroutine	procedure	main/ori/simple_ori.f90	1210	private
ori2str	function	procedure	main/ori/simple_ori.f90	1090	private
ori_from_rotmat	subroutine	procedure	main/ori/simple_ori.f90	154	private
otsu_1	subroutine	procedure	utils/math/simple_math.f90	794	private
otsu_2	subroutine	procedure	utils/math/simple_math.f90	860	private
otsu_3	subroutine	procedure	utils/math/simple_math.f90	876	private
otsu_img	subroutine	procedure	utils/simple_segmentation.f90	743	public
otsu_robust_fast	subroutine	procedure	utils/simple_segmentation.f90	826	public
outerprod_d	function	procedure	utils/math/simple_linalg.f90	504	private
outerprod_r	function	procedure	utils/math/simple_linalg.f90	498	private
outputContourLines	subroutine	procedure	extlibs/xml/wkml/m_wkml_contours.F90	190	private
outputContourRegions	subroutine	procedure	extlibs/xml/wkml/m_wkml_contours.F90	238	private
output_terminal	function	procedure	extlibs/gnufor/gnufor2.f90	61	private
p1_lt_p2	function	procedure	utils/math/simple_srch_sort_loc.f90	157	private
pack_imgarr	function	procedure	utils/simple_imgarr_utils.f90	36	public
parameterChArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	743	private
parameterChArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	507	private
parameterChMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	1227	private
parameterChMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	990	private
parameterChSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	266	private
parameterCmplxDpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	542	private
parameterCmplxDpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	300	private
parameterCmplxDpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	1026	private
parameterCmplxDpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	777	private
parameterCmplxDpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	65	private
parameterCmplxSpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	576	private
parameterCmplxSpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	335	private
parameterCmplxSpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	1060	private
parameterCmplxSpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	813	private
parameterCmplxSpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	99	private
parameterIntArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	678	private
parameterIntArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	440	private
parameterIntMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	1162	private
parameterIntMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	921	private
parameterIntSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	201	private
parameterLgArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	711	private
parameterLgArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	474	private
parameterLgMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	1195	private
parameterLgMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	956	private
parameterLgSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	234	private
parameterRealDpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	610	private
parameterRealDpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	370	private
parameterRealDpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	1094	private
parameterRealDpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	849	private
parameterRealDpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	133	private
parameterRealSpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	644	private
parameterRealSpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	405	private
parameterRealSpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	1128	private
parameterRealSpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	885	private
parameterRealSpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_parameter.F90	167	private
parse_array	subroutine	procedure	extlibs/json/json_value_module.f90	10239	private
parse_cmdline	subroutine	procedure	utils/structs/simple_chash.f90	173	private
parse_dtd_attlist	subroutine	procedure	extlibs/xml/common/m_common_element.F90	873	private
parse_dtd_element	subroutine	procedure	extlibs/xml/common/m_common_element.F90	268	private
parse_for_chars	subroutine	procedure	extlibs/json/json_value_module.f90	10397	private
parse_number	subroutine	procedure	extlibs/json/json_value_module.f90	10444	private
parse_object	subroutine	procedure	extlibs/json/json_value_module.f90	10136	private
parse_string	subroutine	procedure	extlibs/json/json_value_module.f90	10304	private
parse_value	subroutine	procedure	extlibs/json/json_value_module.f90	9455	private
parsestr	subroutine	procedure	utils/simple_string_utils.f90	142	private
partial_shuffle_1	subroutine	procedure	utils/math/simple_rnd.f90	168	private
partial_shuffle_2	subroutine	procedure	utils/math/simple_rnd.f90	186	private
peakfinder	function	procedure	utils/math/simple_srch_sort_loc.f90	491	private
pearsn_1	function	procedure	utils/math/simple_stat.f90	556	private
pearsn_2	function	procedure	utils/math/simple_stat.f90	633	private
pearsn_3	function	procedure	utils/math/simple_stat.f90	661	private
pearsn_serial	function	procedure	utils/math/simple_stat.f90	584	private
pearsn_serial_8	function	procedure	utils/math/simple_stat.f90	609	private
phase_angle	function	procedure	utils/math/simple_math_ft.f90	245	private
pixels_dist_1	function	procedure	utils/math/simple_math.f90	915	private
pixels_dist_2	function	procedure	utils/math/simple_math.f90	947	private
plane_from_points	function	procedure	utils/math/simple_linalg.f90	510	private
plot3d	subroutine	procedure	extlibs/gnufor/gnufor2.f90	844	private
plot_1	subroutine	procedure	extlibs/gnufor/gnufor2.f90	1856	private
plot_2	subroutine	procedure	extlibs/gnufor/gnufor2.f90	1673	private
plot_3	subroutine	procedure	extlibs/gnufor/gnufor2.f90	1468	private
plot_4	subroutine	procedure	extlibs/gnufor/gnufor2.f90	1243	private
pop_char	subroutine	procedure	extlibs/json/json_value_module.f90	10553	private
pop_elstack	function	procedure	extlibs/xml/common/m_common_elstack.F90	133	private
pop_entity_list	function	procedure	extlibs/xml/common/m_common_entities.F90	168	private
pop_nl	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4805	public
power_sampling	subroutine	procedure	utils/math/simple_stat.f90	995	private
pparms2str	function	procedure	main/ori/simple_ori.f90	1054	private
prec2ori	subroutine	procedure	main/ori/simple_ori.f90	1216	private
prep_part_jobs	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	391	private
prepare_tree_sub_distmat	subroutine	procedure	utils/math/simple_stat.f90	809	private
prepimgbatch	subroutine	procedure	main/strategies/search/simple_matcher_ptcl_io.f90	23	private
print	subroutine	procedure	utils/simple_string.f90	532	private
print	subroutine	procedure	utils/structs/simple_hash.f90	438	private
print_buffer	subroutine	procedure	extlibs/xml/common/m_common_buffer.F90	71	private
print_dict	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	1068	private
print_elstack	subroutine	procedure	extlibs/xml/common/m_common_elstack.F90	224	private
print_entity_list	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	187	private
print_gpu_specs	subroutine	procedure	utils/simple_gpu_utils.f90	208	private
print_jobs_status	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	208	private
print_key_val_pair_1	subroutine	procedure	utils/structs/simple_chash.f90	550	private
print_key_val_pair_2	subroutine	procedure	utils/structs/simple_chash.f90	579	private
print_key_val_pairs	subroutine	procedure	utils/structs/simple_chash.f90	601	private
print_magic_box_range	subroutine	procedure	utils/simple_magic_boxes.f90	83	public
print_mat	subroutine	procedure	main/ori/simple_ori.f90	1388	private
print_ori	subroutine	procedure	main/ori/simple_ori.f90	1398	private
probks	function	procedure	utils/math/simple_stat.f90	1094	private
progress	subroutine	procedure	utils/simple_jiffys.f90	17	private
progress_gfortran	subroutine	procedure	utils/simple_jiffys.f90	28	private
projz	subroutine	procedure	utils/math/simple_linalg.f90	542	private
propertyChArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	663	private
propertyChArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	455	private
propertyChMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	1091	private
propertyChMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	882	private
propertyChSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	242	private
propertyCmplxDpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	486	private
propertyCmplxDpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	272	private
propertyCmplxDpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	914	private
propertyCmplxDpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	693	private
propertyCmplxDpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	65	private
propertyCmplxSpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	516	private
propertyCmplxSpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	303	private
propertyCmplxSpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	944	private
propertyCmplxSpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	725	private
propertyCmplxSpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	95	private
propertyIntArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	606	private
propertyIntArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	396	private
propertyIntMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	1034	private
propertyIntMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	821	private
propertyIntSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	185	private
propertyLgArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	635	private
propertyLgArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	426	private
propertyLgMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	1063	private
propertyLgMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	852	private
propertyLgSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	214	private
propertyRealDpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	546	private
propertyRealDpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	334	private
propertyRealDpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	974	private
propertyRealDpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	757	private
propertyRealDpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	125	private
propertyRealSpArrSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	576	private
propertyRealSpArrSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	365	private
propertyRealSpMatSh	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	1004	private
propertyRealSpMatSi	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	789	private
propertyRealSpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_property.F90	155	private
push_1	subroutine	procedure	utils/structs/simple_hash.f90	161	private
push_1	subroutine	procedure	utils/structs/simple_chash.f90	205	private
push_2	subroutine	procedure	utils/structs/simple_hash.f90	179	private
push_2	subroutine	procedure	utils/structs/simple_chash.f90	223	private
push_3	subroutine	procedure	utils/structs/simple_chash.f90	241	private
push_char	subroutine	procedure	extlibs/json/json_value_module.f90	10692	private
push_elstack	subroutine	procedure	extlibs/xml/common/m_common_elstack.F90	114	private
putNodesInDocument	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4499	private
put_last	subroutine	procedure	utils/math/simple_math.f90	48	private
pythag_dp	function	procedure	utils/math/simple_linalg.f90	904	private
pythag_sp	function	procedure	utils/math/simple_linalg.f90	898	private
qr_solve	subroutine	procedure	utils/math/simple_linalg.f90	962	private
qsys_cleanup	subroutine	procedure	utils/qsys/simple_qsys_funs.f90	16	private
qsys_declare_part_finished	subroutine	procedure	utils/qsys/simple_qsys_funs.f90	59	private
qsys_job_finished	subroutine	procedure	utils/qsys/simple_qsys_funs.f90	71	private
qsys_subproject_job_finished	subroutine	procedure	utils/qsys/simple_qsys_funs.f90	77	private
qsys_watcher_1	subroutine	procedure	utils/qsys/simple_qsys_funs.f90	84	private
qsys_watcher_2	subroutine	procedure	utils/qsys/simple_qsys_funs.f90	99	private
qsys_watcher_diag	subroutine	procedure	utils/qsys/simple_qsys_funs.f90	124	private
quadri	function	procedure	utils/math/simple_math.f90	715	private
quantize_vec	subroutine	procedure	utils/math/simple_math.f90	295	private
quantize_vec_serial	subroutine	procedure	utils/math/simple_math.f90	257	private
r8po_fa	subroutine	procedure	utils/math/simple_rnd.f90	474	private
rad2deg_1	function	procedure	utils/math/simple_linalg.f90	808	private
rad2deg_2	function	procedure	utils/math/simple_linalg.f90	814	private
ran3	function	procedure	utils/math/simple_rnd.f90	103	private
ran3arr_1	subroutine	procedure	utils/math/simple_rnd.f90	109	private
ran3arr_2	subroutine	procedure	utils/math/simple_rnd.f90	115	private
randn_1	function	procedure	utils/math/simple_rnd.f90	122	private
randn_2	function	procedure	utils/math/simple_rnd.f90	132	private
rank_centroid_weights	subroutine	procedure	utils/math/simple_stat.f90	1548	private
rank_exponent_weights	subroutine	procedure	utils/math/simple_stat.f90	1562	private
rank_inverse_weights	subroutine	procedure	utils/math/simple_stat.f90	1575	private
rank_sum_weights	subroutine	procedure	utils/math/simple_stat.f90	1534	private
raw	function	procedure	utils/simple_string.f90	133	private
read	subroutine	procedure	main/ori/simple_ori.f90	1424	private
read_cavgs_into_imgarr	function	procedure	utils/simple_imgarr_utils.f90	114	public
read_exit_code	subroutine	procedure	fileio/simple_fileio.f90	855	public
read_filetable	subroutine	procedure	fileio/simple_fileio.f90	806	public
read_imgbatch_1	subroutine	procedure	main/strategies/search/simple_matcher_ptcl_io.f90	64	private
read_imgbatch_2	subroutine	procedure	main/strategies/search/simple_matcher_ptcl_io.f90	84	private
read_imgbatch_3	subroutine	procedure	main/strategies/search/simple_matcher_ptcl_io.f90	104	private
read_seed_shift_table	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	235	private
read_stk_into_imgarr	function	procedure	utils/simple_imgarr_utils.f90	149	public
readfile	subroutine	procedure	utils/simple_string.f90	504	private
readline	subroutine	procedure	utils/simple_string.f90	494	private
real2str	function	procedure	utils/simple_string.f90	77	private
real_dp_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1461	private
real_sp_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1131	private
real_to_string	subroutine	procedure	extlibs/json/json_string_utilities.f90	150	public
realdp2str	function	procedure	utils/simple_string_utils.f90	421	private
realloc_chash	subroutine	procedure	utils/structs/simple_chash.f90	128	private
realloc_hash	subroutine	procedure	utils/structs/simple_hash.f90	113	private
realsp2str	function	procedure	utils/simple_string_utils.f90	411	private
refine_peak_thres_sortmeans	subroutine	procedure	utils/simple_segmentation.f90	203	public
registered_string	function	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	130	private
reject	subroutine	procedure	main/ori/simple_ori.f90	167	private
remove	subroutine	procedure	utils/math/simple_ran_tabu.f90	83	private
removeAttribute	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	9302	public
removeAttributeNS	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	9742	public
removeAttributeNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9489	public
removeAttributeNodeNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9932	public
removeChild	function	procedure	extlibs/xml/dom/m_dom_dom.F90	2360	public
removeDefaultNS	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	202	public
removeNamedItem	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5121	public
removeNamedItemNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5428	public
removeNodesFromDocument	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4573	private
removePrefix	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	396	private
removePrefixedNS	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	327	public
removePrefixedURI	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	223	private
remove_key_by_index	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	379	private
remove_last_string	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	71	private
remove_nl	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4843	public
remove_node_nl	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4880	private
removepunct	subroutine	procedure	utils/simple_string_utils.f90	340	private
removesp	subroutine	procedure	utils/simple_string_utils.f90	372	private
renameNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	8455	public
reorder_1	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	710	private
reorder_2	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	726	private
replaceChild	function	procedure	extlibs/xml/dom/m_dom_dom.F90	1851	public
replaceData	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10793	public
replace_string	subroutine	procedure	extlibs/json/json_string_utilities.f90	794	public
report_declarations	subroutine	procedure	extlibs/xml/common/m_common_element.F90	1348	private
resang	function	procedure	utils/math/simple_math_ft.f90	265	private
reset	subroutine	procedure	utils/math/simple_ran_tabu.f90	53	private
reset	subroutine	procedure	main/image/simple_ftiter.f90	192	private
resetParameter	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	483	private
reset_buffer	subroutine	procedure	extlibs/xml/common/m_common_buffer.F90	55	private
reset_dict	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	988	private
reset_elstack	subroutine	procedure	extlibs/xml/common/m_common_elstack.F90	72	private
reset_entity_list	subroutine	procedure	extlibs/xml/common/m_common_entities.F90	147	private
reset_pparms	subroutine	procedure	main/ori/simple_ori.f90	1680	private
resize_elstack	subroutine	procedure	extlibs/xml/common/m_common_elstack.F90	80	private
reverse_drarr	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	550	private
reverse_f	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	575	private
reverse_iarr	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	505	private
reverse_rarr	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	527	private
reverselookup	function	procedure	utils/structs/simple_chash.f90	404	private
ring_stats	subroutine	procedure	main/image/simple_image.f90	2648	private
rm_from_fbody	function	procedure	fileio/simple_fileio.f90	442	public
rm_substr	subroutine	procedure	utils/simple_string.f90	277	private
rmat2file	subroutine	procedure	fileio/simple_fileio.f90	984	public
rnd_4dim_sphere_pnt	function	procedure	utils/math/simple_rnd.f90	367	private
rnd_euler_1	subroutine	procedure	main/simple_sym.f90	845	private
rnd_euler_1	subroutine	procedure	main/ori/simple_ori.f90	557	private
rnd_euler_2	subroutine	procedure	main/simple_sym.f90	851	private
rnd_euler_2	subroutine	procedure	main/ori/simple_ori.f90	566	private
rnd_euler_3	subroutine	procedure	main/simple_sym.f90	859	private
rnd_euler_3	subroutine	procedure	main/ori/simple_ori.f90	587	private
rnd_euler_4	subroutine	procedure	main/ori/simple_ori.f90	608	private
rnd_euler_5	subroutine	procedure	main/ori/simple_ori.f90	629	private
rnd_inds	function	procedure	utils/math/simple_rnd.f90	409	private
rnd_inpl	subroutine	procedure	main/ori/simple_ori.f90	676	private
rnd_ori	subroutine	procedure	main/ori/simple_ori.f90	650	private
rnd_shift	subroutine	procedure	main/ori/simple_ori.f90	683	private
robust_normalization	subroutine	procedure	utils/math/simple_stat.f90	1444	private
robust_normalize_minmax	subroutine	procedure	utils/math/simple_stat.f90	861	private
robust_scaling	subroutine	procedure	utils/math/simple_stat.f90	1453	private
robust_sigma_thres	function	procedure	utils/math/simple_stat.f90	1405	private
robust_z_scores	function	procedure	utils/math/simple_stat.f90	1436	private
rot_to_asym	subroutine	procedure	main/simple_sym.f90	349	private
rotall_to_asym	subroutine	procedure	main/simple_sym.f90	367	private
rotate_vec	function	procedure	utils/math/simple_math.f90	1122	private
rotmat2d	subroutine	procedure	utils/math/simple_math.f90	1099	private
round2even	function	procedure	utils/math/simple_math.f90	1018	private
round2odd	function	procedure	utils/math/simple_math.f90	1035	private
round_shifts	subroutine	procedure	main/ori/simple_ori.f90	1437	private
rpl_substr	subroutine	procedure	utils/simple_string.f90	373	private
run_gnuplot	subroutine	procedure	extlibs/gnufor/gnufor2.f90	2017	private
same_energy_euclid	function	procedure	utils/math/simple_linalg.f90	883	private
sample_bounded_dist	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	363	private
sample_likelihood_dist	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	474	private
sample_likelihood_index	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	538	private
sample_power_dist	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	409	private
sauron_ori_parser_1	subroutine	procedure	utils/simple_sauron.f90	48	private
sauron_ori_parser_2	subroutine	procedure	utils/simple_sauron.f90	100	private
sauvola	subroutine	procedure	utils/simple_segmentation.f90	921	public
savgol	subroutine	procedure	utils/math/simple_math.f90	1232	private
scalartocomplexdp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	616	private
scalartocomplexsp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	491	private
scalartointeger	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	269	private
scalartological	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	192	private
scalartorealdp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	417	private
scalartorealsp	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	343	private
scalartostring	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_parse_input.F90	43	private
schedule_array_jobs	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	986	private
schedule_jobs	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	962	private
schedule_streaming	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	1001	private
schedule_subproject_jobs	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	974	private
scores2order	function	procedure	utils/math/simple_srch_sort_loc.f90	678	private
scores2scores_percen	subroutine	procedure	utils/math/simple_stat.f90	1162	private
seed_rnd	subroutine	procedure	utils/math/simple_rnd.f90	50	private
service_persistent_worker_warmup	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	897	private
setAttribute	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	9217	public
setAttributeNS	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	9617	public
setAttributeNode	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9413	public
setAttributeNodeNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	9856	public
setBase	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	918	private
setData	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	11371	public
setDeclared	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	862	private
setDocType	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	5936	public
setDocumentElement	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	6081	public
setFoX_checks	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	5891	public
setGCstate	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	8854	public
setIdAttribute	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10074	public
setIdAttributeNS	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10111	public
setIdAttributeNode	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10149	public
setIsElementContentWhitespace	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	11288	public
setIsId_by_index	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	888	private
setNamedItem	function	procedure	extlibs/xml/dom/m_dom_dom.F90	4998	public
setNamedItemNS	function	procedure	extlibs/xml/dom/m_dom_dom.F90	5301	public
setNodeValue	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	1049	public
setParameter	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	503	public
setPrefix	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	3434	public
setReadOnlyMap	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	5546	public
setReadOnlyNode	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4646	public
setSpecified	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	778	private
setTextContent	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4177	public
setValue	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10407	public
setXds	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	6006	public
setXmlVersion	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	7822	public
set_1	subroutine	procedure	utils/structs/simple_hash.f90	197	private
set_1	subroutine	procedure	utils/structs/simple_chash.f90	259	private
set_1	subroutine	procedure	main/ori/simple_ori.f90	456	private
set_2	subroutine	procedure	utils/structs/simple_hash.f90	215	private
set_2	subroutine	procedure	utils/structs/simple_chash.f90	278	private
set_2	subroutine	procedure	main/ori/simple_ori.f90	476	private
set_3	subroutine	procedure	utils/structs/simple_hash.f90	233	private
set_3	subroutine	procedure	utils/structs/simple_chash.f90	298	private
set_3	subroutine	procedure	main/ori/simple_ori.f90	496	private
set_4	subroutine	procedure	main/ori/simple_ori.f90	502	private
set_5	subroutine	procedure	main/ori/simple_ori.f90	509	private
set_class	subroutine	procedure	main/ori/simple_ori.f90	526	private
set_ctfvars	subroutine	procedure	main/ori/simple_ori.f90	1330	private
set_dble	subroutine	procedure	utils/simple_string.f90	474	private
set_dfx	subroutine	procedure	main/ori/simple_ori.f90	436	private
set_dfy	subroutine	procedure	main/ori/simple_ori.f90	446	private
set_euler	subroutine	procedure	main/ori/simple_ori.f90	363	private
set_hp	subroutine	procedure	main/image/simple_ftiter.f90	124	private
set_int	subroutine	procedure	utils/simple_string.f90	483	private
set_jobs_status	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	232	private
set_json_core_in_file	subroutine	procedure	extlibs/json/json_file_module.f90	426	private
set_localName_by_index_s	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	550	private
set_localName_by_index_vs	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	560	private
set_nsURI_by_index	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	530	private
set_offload_device_1	subroutine	procedure	utils/simple_gpu_utils.f90	147	private
set_offload_device_2	subroutine	procedure	utils/simple_gpu_utils.f90	180	private
set_ogid	subroutine	procedure	main/ori/simple_ori.f90	546	private
set_prefix_by_index	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	540	private
set_real	subroutine	procedure	utils/simple_string.f90	465	private
set_refine3D_automsk_policy	subroutine	procedure	main/simple_abinitio_controller.f90	338	private
set_refine3D_balance_policy	subroutine	procedure	main/simple_abinitio_controller.f90	281	private
set_refine3D_filtering_policy	subroutine	procedure	main/simple_abinitio_controller.f90	319	private
set_refine3D_gauref_policy	subroutine	procedure	main/simple_abinitio_controller.f90	288	private
set_refine3D_mode_policy	subroutine	procedure	main/simple_abinitio_controller.f90	240	private
set_refine3D_stage_controls	subroutine	procedure	main/simple_abinitio_controller.f90	348	private
set_refine3D_symmetry_policy	subroutine	procedure	main/simple_abinitio_controller.f90	228	private
set_refine3D_trailrec_policy	subroutine	procedure	main/simple_abinitio_controller.f90	299	private
set_refine3D_update_policy	subroutine	procedure	main/simple_abinitio_controller.f90	206	private
set_shift	subroutine	procedure	main/ori/simple_ori.f90	424	private
set_state	subroutine	procedure	main/ori/simple_ori.f90	516	private
set_stkind	subroutine	procedure	main/ori/simple_ori.f90	536	private
set_subgrps	subroutine	procedure	main/simple_sym.f90	1758	private
setdocumentURI	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	8022	public
setdomConfig	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	8418	public
setillFormed	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10996	public
setisId_DOM	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10298	private
setliveNodeLists	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	8925	public
setnamespaceURI	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	3351	private
setownerDocument	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	1305	private
setspecified	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	10226	public
setstrictErrorChecking	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	8094	public
setstringValue	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	11085	public
setxmlStandalone	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	7745	public
sgelsy	subroutine	procedure	utils/math/simple_linalg.f90	124	private
sgesvd	subroutine	procedure	utils/math/simple_linalg.f90	162	private
sgetrf	subroutine	procedure	utils/math/simple_linalg.f90	178	private
sgetri	subroutine	procedure	utils/math/simple_linalg.f90	190	private
shallow_copy_entity	function	procedure	extlibs/xml/common/m_common_entities.F90	76	private
shcloc	function	procedure	utils/math/simple_rnd.f90	384	private
shell_quote	function	procedure	utils/qsys/simple_qsys_ctrl.f90	718	private
shft	subroutine	procedure	utils/math/simple_math.f90	1052	private
shift	subroutine	procedure	main/ori/simple_ori.f90	1444	private
shuffle_1	subroutine	procedure	utils/math/simple_ran_tabu.f90	211	private
shuffle_1	subroutine	procedure	utils/math/simple_rnd.f90	141	private
shuffle_2	subroutine	procedure	utils/math/simple_ran_tabu.f90	226	private
shuffle_2	subroutine	procedure	utils/math/simple_rnd.f90	153	private
simple_copy_file	subroutine	procedure	fileio/simple_fileio.f90	1066	public
simple_end	subroutine	procedure	utils/simple_jiffys.f90	67	private
simple_print_git_version	subroutine	procedure	utils/simple_jiffys.f90	61	private
simple_print_timer	subroutine	procedure	utils/simple_jiffys.f90	56	private
sinc	function	procedure	utils/math/simple_math.f90	1148	private
sinc_apod	function	procedure	main/interp/simple_winfuns.f90	318	private
sinc_instr	function	procedure	main/interp/simple_winfuns.f90	335	private
sinhc	function	procedure	main/interp/simple_kbinterpol.f90	390	private
size_el	function	procedure	extlibs/xml/common/m_common_entities.F90	69	private
smat2dmat	function	procedure	utils/math/simple_stat.f90	1147	private
sniff_folders_SJ	subroutine	procedure	main/stream/simple_stream_watcher.f90	418	private
snrm2	function	procedure	utils/math/simple_linalg.f90	112	private
sobel	subroutine	procedure	utils/simple_segmentation.f90	388	public
sort	subroutine	procedure	utils/structs/simple_chash.f90	522	private
sortAttrs	subroutine	procedure	extlibs/xml/common/m_common_attrs.F90	996	private
sortmeans	subroutine	procedure	utils/math/simple_math.f90	211	private
spaces	function	procedure	utils/simple_string_utils.f90	51	private
sparse_eigh	subroutine	procedure	utils/math/simple_linalg.f90	1212	private
spear	function	procedure	utils/math/simple_stat.f90	693	private
splitText	function	procedure	extlibs/xml/dom/m_dom_dom.F90	11180	public
split_1	subroutine	procedure	utils/simple_string_utils.f90	216	private
split_2	subroutine	procedure	utils/simple_string_utils.f90	255	private
split_str	subroutine	procedure	utils/simple_string_utils.f90	201	private
squared_sampling	subroutine	procedure	utils/math/simple_stat.f90	1038	private
sqwin_1d_1	subroutine	procedure	main/interp/simple_edges_sqwins.f90	257	private
sqwin_1d_2	subroutine	procedure	main/interp/simple_edges_sqwins.f90	269	private
sqwin_2d_1	subroutine	procedure	main/interp/simple_edges_sqwins.f90	282	private
sqwin_2d_2	subroutine	procedure	main/interp/simple_edges_sqwins.f90	291	private
sqwin_3d_1	subroutine	procedure	main/interp/simple_edges_sqwins.f90	301	private
sqwin_3d_2	subroutine	procedure	main/interp/simple_edges_sqwins.f90	311	private
ssaupd	subroutine	procedure	utils/math/simple_linalg.f90	238	private
sseupd	subroutine	procedure	utils/math/simple_linalg.f90	249	private
ssyev	subroutine	procedure	utils/math/simple_linalg.f90	204	private
ssyevr	subroutine	procedure	utils/math/simple_linalg.f90	228	private
stage_coarray_jobs	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	420	private
start_prefix_handler	subroutine	procedure	extlibs/xml/common/m_common_namespaces.F90	454	private
stemname	function	procedure	fileio/simple_fileio.f90	589	public
stmAddChArr	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	633	private
stmAddChMat	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	945	private
stmAddChSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	334	private
stmAddCmplxDpArr	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	381	private
stmAddCmplxDpMat	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	687	private
stmAddCmplxDpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	88	private
stmAddCmplxSpArr	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	424	private
stmAddCmplxSpMat	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	731	private
stmAddCmplxSpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	130	private
stmAddIntArr	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	553	private
stmAddIntMat	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	863	private
stmAddIntSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	256	private
stmAddLgArr	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	595	private
stmAddLgMat	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	906	private
stmAddLgSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	297	private
stmAddRealDpArr	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	467	private
stmAddRealDpMat	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	775	private
stmAddRealDpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	172	private
stmAddRealSpArr	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	510	private
stmAddRealSpMat	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	819	private
stmAddRealSpSca	subroutine	procedure	extlibs/xml/wcml/m_wcml_stml.F90	214	private
str2format_1	subroutine	procedure	utils/simple_string_utils.f90	73	private
str2format_2	subroutine	procedure	utils/simple_string_utils.f90	84	private
str2ori	subroutine	procedure	main/ori/simple_ori.f90	711	private
str2real_1	function	procedure	utils/simple_string_utils.f90	395	private
str2real_2	function	procedure	utils/simple_string_utils.f90	404	private
str2realdp_local	subroutine	procedure	utils/simple_sauron.f90	22	private
str_complex_dp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1975	private
str_complex_dp_array	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2021	private
str_complex_dp_array_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1988	private
str_complex_dp_array_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2004	private
str_complex_dp_array_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	613	private
str_complex_dp_array_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	626	private
str_complex_dp_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1960	private
str_complex_dp_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1942	private
str_complex_dp_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	594	private
str_complex_dp_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	606	private
str_complex_dp_matrix	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2077	private
str_complex_dp_matrix_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2034	private
str_complex_dp_matrix_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	2060	private
str_complex_dp_matrix_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	633	private
str_complex_dp_matrix_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	648	private
str_complex_sp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1828	private
str_complex_sp_array	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1874	private
str_complex_sp_array_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1841	private
str_complex_sp_array_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1857	private
str_complex_sp_array_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	552	private
str_complex_sp_array_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	565	private
str_complex_sp_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1813	private
str_complex_sp_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1795	private
str_complex_sp_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	533	private
str_complex_sp_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	545	private
str_complex_sp_matrix	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1930	private
str_complex_sp_matrix_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1887	private
str_complex_sp_matrix_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1913	private
str_complex_sp_matrix_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	572	private
str_complex_sp_matrix_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	587	private
str_integer	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	817	private
str_integer_array	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	900	private
str_integer_array_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	920	private
str_integer_array_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	202	private
str_integer_array_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	188	private
str_integer_base_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	151	private
str_integer_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	845	private
str_integer_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	160	private
str_integer_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	143	private
str_integer_matrix	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	941	private
str_integer_matrix_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	967	private
str_integer_matrix_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	233	private
str_integer_matrix_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	217	private
str_logical	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	993	private
str_logical_array	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1012	private
str_logical_array_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	261	private
str_logical_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	250	private
str_logical_matrix	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1041	private
str_logical_matrix_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	269	private
str_pad	function	procedure	utils/simple_string_utils.f90	495	private
str_real_dp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1667	private
str_real_dp_array	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1679	private
str_real_dp_array_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1700	private
str_real_dp_array_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1718	private
str_real_dp_array_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	496	private
str_real_dp_array_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	483	private
str_real_dp_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1544	private
str_real_dp_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1526	private
str_real_dp_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	405	private
str_real_dp_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	475	private
str_real_dp_matrix	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1779	private
str_real_dp_matrix_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1736	private
str_real_dp_matrix_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1762	private
str_real_dp_matrix_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	510	private
str_real_dp_matrix_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	526	private
str_real_sp	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1336	private
str_real_sp_array	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1348	private
str_real_sp_array_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1369	private
str_real_sp_array_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1387	private
str_real_sp_array_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	368	private
str_real_sp_array_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	355	private
str_real_sp_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1214	private
str_real_sp_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1196	private
str_real_sp_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	277	private
str_real_sp_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	347	private
str_real_sp_matrix	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1448	private
str_real_sp_matrix_fmt	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1405	private
str_real_sp_matrix_fmt_chk	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	1431	private
str_real_sp_matrix_fmt_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	382	private
str_real_sp_matrix_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	398	private
str_string	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	746	private
str_string_array	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	757	private
str_string_array_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	123	private
str_string_matrix	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	784	private
str_string_matrix_len	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	136	private
str_to_int_10	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	672	public
str_to_int_16	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	699	public
str_vs	function	procedure	extlibs/xml/fsys/fox_m_fsys_array_str.F90	31	public
string_to_dble	function	procedure	extlibs/json/json_value_module.f90	7737	private
string_to_int	function	procedure	extlibs/json/json_value_module.f90	7704	private
string_to_integer	subroutine	procedure	extlibs/json/json_string_utilities.f90	114	public
string_to_real	subroutine	procedure	extlibs/json/json_string_utilities.f90	191	public
strip_spaces	function	procedure	extlibs/xml/common/m_common_element.F90	736	private
subStringData	function	procedure	extlibs/xml/dom/m_dom_dom.F90	10486	public
submit_coarray_jobs	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	740	private
submit_script	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	836	private
submit_scripts	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	780	private
substr_remove	function	procedure	utils/simple_string.f90	268	private
substr_replace	subroutine	procedure	utils/simple_string.f90	360	private
surf_1	subroutine	procedure	extlibs/gnufor/gnufor2.f90	1123	private
surf_2	subroutine	procedure	extlibs/gnufor/gnufor2.f90	1097	private
surf_3	subroutine	procedure	extlibs/gnufor/gnufor2.f90	1064	private
svbksb_dp	subroutine	procedure	utils/math/simple_linalg.f90	561	private
svbksb_sp	subroutine	procedure	utils/math/simple_linalg.f90	549	private
svd_multifit_dp	subroutine	procedure	utils/math/simple_linalg.f90	708	private
svd_multifit_sp	subroutine	procedure	utils/math/simple_linalg.f90	679	private
svd_solve	subroutine	procedure	utils/math/simple_linalg.f90	994	private
svdcmp_dp	subroutine	procedure	utils/math/simple_linalg.f90	598	private
svdcmp_sp	subroutine	procedure	utils/math/simple_linalg.f90	573	private
svdfit_dp	subroutine	procedure	utils/math/simple_linalg.f90	651	private
svdfit_sp	subroutine	procedure	utils/math/simple_linalg.f90	623	private
svdvar	subroutine	procedure	utils/math/simple_linalg.f90	737	private
swap_c	subroutine	procedure	utils/simple_jiffys.f90	175	private
swap_cm	subroutine	procedure	utils/simple_jiffys.f90	191	private
swap_cv	subroutine	procedure	utils/simple_jiffys.f90	183	private
swap_i	subroutine	procedure	utils/simple_jiffys.f90	151	private
swap_pointers	subroutine	procedure	extlibs/json/json_value_module.f90	2444	private
swap_r	subroutine	procedure	utils/simple_jiffys.f90	159	private
swap_rv	subroutine	procedure	utils/simple_jiffys.f90	167	private
swap_suffix_1	function	procedure	fileio/simple_fileio.f90	454	public
swap_suffix_2	function	procedure	fileio/simple_fileio.f90	466	public
swape1e3	subroutine	procedure	main/ori/simple_ori.f90	408	private
sym_dists_1	subroutine	procedure	main/simple_sym.f90	382	private
sym_dists_2	subroutine	procedure	main/simple_sym.f90	415	private
sym_tester	subroutine	procedure	main/simple_sym.f90	2014	private
symrandomize	subroutine	procedure	main/simple_sym.f90	702	private
test_addr	subroutine	procedure	main/image/simple_ftiter.f90	385	private
test_eigh	subroutine	procedure	utils/math/simple_linalg.f90	1336	private
test_ftiter	subroutine	procedure	main/image/simple_ftiter.f90	369	private
test_image	subroutine	procedure	main/image/simple_image.f90	2723	private
test_image_local	subroutine	procedure	main/image/simple_image.f90	2733	private
threshold_for_no_peaks	subroutine	procedure	utils/simple_segmentation.f90	189	public
threshold_for_npeaks	subroutine	procedure	utils/simple_segmentation.f90	171	public
to_array	subroutine	procedure	extlibs/json/json_value_module.f90	10114	private
to_char_1	function	procedure	utils/simple_string.f90	144	private
to_char_2	function	procedure	utils/simple_string.f90	155	private
to_cstring	function	procedure	utils/simple_string_utils.f90	1055	private
to_double	subroutine	procedure	extlibs/json/json_value_module.f90	9975	private
to_fnv1a_hash64	function	procedure	utils/simple_string.f90	235	private
to_integer	subroutine	procedure	extlibs/json/json_value_module.f90	9944	private
to_logical	subroutine	procedure	extlibs/json/json_value_module.f90	9913	private
to_lower	function	procedure	extlibs/xml/fsys/fox_m_fsys_format.F90	728	private
to_null	subroutine	procedure	extlibs/json/json_value_module.f90	10068	private
to_object	subroutine	procedure	extlibs/json/json_value_module.f90	10091	private
to_static_1	subroutine	procedure	utils/simple_string.f90	171	private
to_static_2	subroutine	procedure	utils/simple_string.f90	182	private
to_string	subroutine	procedure	extlibs/json/json_value_module.f90	10009	private
to_uni	function	procedure	extlibs/json/json_string_utilities.f90	622	private
to_uni_vec	function	procedure	extlibs/json/json_string_utilities.f90	641	private
tokenize_and_add_strings	subroutine	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	146	private
tokenize_to_string_list	function	procedure	extlibs/xml/fsys/fox_m_fsys_string_list.F90	93	private
trace	function	procedure	utils/math/simple_linalg.f90	752	private
transfer_2Dparams	subroutine	procedure	main/ori/simple_ori.f90	312	private
transfer_3Dparams	subroutine	procedure	main/ori/simple_ori.f90	340	private
transfmat2inpls	subroutine	procedure	main/ori/simple_ori.f90	1519	private
transp	subroutine	procedure	main/ori/simple_ori.f90	1617	private
traverse	subroutine	procedure	extlibs/json/json_value_module.f90	8964	private
ucs4_comp_default	function	procedure	extlibs/json/json_string_utilities.f90	694	private
ucs4_join_default	function	procedure	extlibs/json/json_string_utilities.f90	658	private
ucs4_neq_default	function	procedure	extlibs/json/json_string_utilities.f90	730	private
unescape_string	subroutine	procedure	extlibs/json/json_string_utilities.f90	437	public
unique	subroutine	procedure	utils/math/simple_srch_sort_loc.f90	660	private
unmemoize_mask_coords	subroutine	procedure	main/image/simple_image.f90	2707	private
unmemoize_powspec_coords	subroutine	procedure	main/image/simple_image.f90	2713	private
updateNodeLists	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4924	private
updateTextContentLength	subroutine	procedure	extlibs/xml/dom/m_dom_dom.F90	4038	private
update_queue	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	918	private
updatestack	subroutine	procedure	utils/qsys/simple_qsys_ctrl.f90	1049	private
uppercase	function	procedure	utils/simple_string_utils.f90	549	private
upsample_sigma2	subroutine	procedure	utils/math/simple_math_ft.f90	272	private
vabs_dp	function	procedure	utils/math/simple_linalg.f90	768	private
vabs_sp	function	procedure	utils/math/simple_linalg.f90	762	private
valid_json_hex	function	procedure	extlibs/json/json_string_utilities.f90	586	public
vector_angle_norm	function	procedure	utils/math/simple_linalg.f90	774	private
vis_2Dinteger_mat	subroutine	procedure	utils/math/simple_math.f90	155	private
vis_2Dreal_mat	subroutine	procedure	utils/math/simple_math.f90	146	private
vis_3Dinteger_mat	subroutine	procedure	utils/math/simple_math.f90	173	private
vis_3Dreal_mat	subroutine	procedure	utils/math/simple_math.f90	164	private
vox2ang	function	procedure	utils/math/simple_linalg.f90	826	private
vs_s_concat	function	procedure	extlibs/xml/fsys/fox_m_fsys_array_str.F90	73	private
vs_str	function	procedure	extlibs/xml/fsys/fox_m_fsys_array_str.F90	46	public
vs_str_alloc	function	procedure	extlibs/xml/fsys/fox_m_fsys_array_str.F90	53	public
vs_vs_alloc	function	procedure	extlibs/xml/fsys/fox_m_fsys_array_str.F90	61	public
wait_for_closure	subroutine	procedure	fileio/simple_fileio.f90	275	public
watch	subroutine	procedure	main/stream/simple_stream_watcher.f90	137	private
watchdirs	subroutine	procedure	main/stream/simple_stream_watcher.f90	345	private
which	function	procedure	main/interp/simple_winfuns.f90	129	private
workout_directory_structure	subroutine	procedure	main/stream/simple_stream_watcher.f90	457	private
wrap_json_add_double_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3572	private
wrap_json_add_double_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3991	private
wrap_json_add_integer_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3485	private
wrap_json_add_integer_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3863	private
wrap_json_add_logical_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3659	private
wrap_json_add_logical_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3927	private
wrap_json_add_member_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3398	private
wrap_json_add_string_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	3749	private
wrap_json_add_string_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	4099	private
wrap_json_create_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	6303	private
wrap_json_file_add_double	subroutine	procedure	extlibs/json/json_file_module.f90	1608	private
wrap_json_file_add_double_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1650	private
wrap_json_file_add_integer	subroutine	procedure	extlibs/json/json_file_module.f90	1524	private
wrap_json_file_add_integer_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1566	private
wrap_json_file_add_logical	subroutine	procedure	extlibs/json/json_file_module.f90	1692	private
wrap_json_file_add_logical_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1734	private
wrap_json_file_add_object	subroutine	procedure	extlibs/json/json_file_module.f90	1482	private
wrap_json_file_add_string	subroutine	procedure	extlibs/json/json_file_module.f90	1779	private
wrap_json_file_add_string_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1887	private
wrap_json_file_get_alloc_string_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1438	private
wrap_json_file_get_double	subroutine	procedure	extlibs/json/json_file_module.f90	1204	private
wrap_json_file_get_double_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1242	private
wrap_json_file_get_integer	subroutine	procedure	extlibs/json/json_file_module.f90	1128	private
wrap_json_file_get_integer_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1166	private
wrap_json_file_get_logical	subroutine	procedure	extlibs/json/json_file_module.f90	1280	private
wrap_json_file_get_logical_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1318	private
wrap_json_file_get_object	subroutine	procedure	extlibs/json/json_file_module.f90	1090	private
wrap_json_file_get_string	subroutine	procedure	extlibs/json/json_file_module.f90	1357	private
wrap_json_file_get_string_vec	subroutine	procedure	extlibs/json/json_file_module.f90	1395	private
wrap_json_file_load_from_string	subroutine	procedure	extlibs/json/json_file_module.f90	661	private
wrap_json_file_remove	subroutine	procedure	extlibs/json/json_file_module.f90	2233	private
wrap_json_file_rename	subroutine	procedure	extlibs/json/json_file_module.f90	1014	private
wrap_json_file_update_integer	subroutine	procedure	extlibs/json/json_file_module.f90	1998	private
wrap_json_file_update_logical	subroutine	procedure	extlibs/json/json_file_module.f90	2041	private
wrap_json_file_update_real	subroutine	procedure	extlibs/json/json_file_module.f90	2084	private
wrap_json_file_update_string	subroutine	procedure	extlibs/json/json_file_module.f90	2130	private
wrap_json_file_valid_path	function	procedure	extlibs/json/json_file_module.f90	977	private
wrap_json_file_valid_path_op	function	procedure	extlibs/json/json_file_module.f90	941	private
wrap_json_file_variable_info	subroutine	procedure	extlibs/json/json_file_module.f90	804	private
wrap_json_file_variable_matrix_info	subroutine	procedure	extlibs/json/json_file_module.f90	861	private
wrap_json_get_alloc_string_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8872	private
wrap_json_get_array_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	9056	private
wrap_json_get_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	7405	private
wrap_json_get_double_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8097	private
wrap_json_get_double_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8207	private
wrap_json_get_integer_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	7866	private
wrap_json_get_integer_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	7976	private
wrap_json_get_logical_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8325	private
wrap_json_get_logical_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8435	private
wrap_json_get_path	subroutine	procedure	extlibs/json/json_value_module.f90	7669	private
wrap_json_get_string_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8601	private
wrap_json_get_string_vec_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	8719	private
wrap_json_info_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	1513	private
wrap_json_matrix_info_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	1748	private
wrap_json_parse_string	subroutine	procedure	extlibs/json/json_value_module.f90	9252	private
wrap_json_rename_by_path	subroutine	procedure	extlibs/json/json_value_module.f90	6372	private
wrap_json_throw_exception	subroutine	procedure	extlibs/json/json_value_module.f90	1874	private
wrap_json_update_double	subroutine	procedure	extlibs/json/json_value_module.f90	2921	private
wrap_json_update_integer	subroutine	procedure	extlibs/json/json_value_module.f90	2983	private
wrap_json_update_logical	subroutine	procedure	extlibs/json/json_value_module.f90	2859	private
wrap_json_update_string	subroutine	procedure	extlibs/json/json_value_module.f90	3050	private
wrap_json_valid_path	function	procedure	extlibs/json/json_value_module.f90	6157	private
wrap_json_value_add_double	subroutine	procedure	extlibs/json/json_value_module.f90	4215	private
wrap_json_value_add_double_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4268	private
wrap_json_value_add_integer	subroutine	procedure	extlibs/json/json_value_module.f90	4358	private
wrap_json_value_add_integer_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4411	private
wrap_json_value_add_logical	subroutine	procedure	extlibs/json/json_value_module.f90	4458	private
wrap_json_value_add_logical_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4511	private
wrap_json_value_add_null	subroutine	procedure	extlibs/json/json_value_module.f90	4312	private
wrap_json_value_add_string	subroutine	procedure	extlibs/json/json_value_module.f90	4560	private
wrap_json_value_add_string_vec	subroutine	procedure	extlibs/json/json_value_module.f90	4657	private
wrap_json_value_create_array	subroutine	procedure	extlibs/json/json_value_module.f90	9895	private
wrap_json_value_create_double	subroutine	procedure	extlibs/json/json_value_module.f90	9697	private
wrap_json_value_create_integer	subroutine	procedure	extlibs/json/json_value_module.f90	9648	private
wrap_json_value_create_logical	subroutine	procedure	extlibs/json/json_value_module.f90	9599	private
wrap_json_value_create_null	subroutine	procedure	extlibs/json/json_value_module.f90	9798	private
wrap_json_value_create_object	subroutine	procedure	extlibs/json/json_value_module.f90	9848	private
wrap_json_value_create_string	subroutine	procedure	extlibs/json/json_value_module.f90	9748	private
wrap_json_value_get_child_by_name	subroutine	procedure	extlibs/json/json_value_module.f90	5233	private
wrap_json_value_remove_if_present	subroutine	procedure	extlibs/json/json_value_module.f90	2799	private
wrap_json_value_rename	subroutine	procedure	extlibs/json/json_value_module.f90	1801	private
write	subroutine	procedure	main/ori/simple_ori.f90	1416	private
write2bild	subroutine	procedure	main/ori/simple_ori.f90	1268	private
write_attributes	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1759	private
write_checkpoint	subroutine	procedure	main/stream/simple_stream_watcher.f90	118	private
write_filetable	subroutine	procedure	fileio/simple_fileio.f90	826	public
write_imgarr_1	subroutine	procedure	utils/simple_imgarr_utils.f90	183	public
write_imgarr_2	subroutine	procedure	utils/simple_imgarr_utils.f90	205	public
write_imgarr_3	subroutine	procedure	utils/simple_imgarr_utils.f90	215	public
write_it	subroutine	procedure	extlibs/json/json_value_module.f90	6058	private
write_it_fast	subroutine	procedure	extlibs/json/json_value_module.f90	5628	private
write_junk_cavgs	subroutine	procedure	utils/simple_imgarr_utils.f90	231	public
write_seed_shift_table	subroutine	procedure	main/simple_eul_prob_tab_utils.f90	221	private
write_selected_cavgs	subroutine	procedure	utils/simple_imgarr_utils.f90	248	public
write_singlelineoftext	subroutine	procedure	fileio/simple_fileio.f90	845	public
writeline	subroutine	procedure	utils/simple_string.f90	521	private
wxml_error_xf	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1811	private
wxml_fatal_xf	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1830	private
wxml_warning_xf	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1793	private
xml_AddAttlistToDTD	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	842	private
xml_AddAttribute_Ch	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1232	private
xml_AddCharacters_ch	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1139	private
xml_AddComment	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1048	private
xml_AddDOCTYPE	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	371	private
xml_AddElementToDTD	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	793	private
xml_AddEntityReference	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1187	private
xml_AddExternalEntity	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	637	private
xml_AddInternalEntity	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	581	private
xml_AddNewline	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1177	private
xml_AddNotation	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	729	private
xml_AddPEReferenceToDTD	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	897	private
xml_AddParameterEntity	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	440	private
xml_AddPseudoAttribute_Ch	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1415	private
xml_AddXMLDeclaration	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	316	private
xml_AddXMLPI	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	984	private
xml_AddXMLStylesheet	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	944	private
xml_Close	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1580	private
xml_DeclareNamespace	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1524	private
xml_EndElement	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1474	private
xml_NewElement	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1078	private
xml_OpenFile	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	167	private
xml_UndeclareNamespace	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1556	private
xmlf_GetPretty_print	function	procedure	extlibs/xml/wxml/m_wxml_core.F90	1646	private
xmlf_SetPretty_print	subroutine	procedure	extlibs/xml/wxml/m_wxml_core.F90	1638	private
xmlf_name	function	procedure	extlibs/xml/wxml/m_wxml_core.F90	1656	private
xmlf_opentag	function	procedure	extlibs/xml/wxml/m_wxml_core.F90	1682	private
xmlf_opentag_len	function	procedure	extlibs/xml/wxml/m_wxml_core.F90	1668	private
z_scores	function	procedure	utils/math/simple_stat.f90	1417	private
zheev	subroutine	procedure	utils/math/simple_linalg.f90	220	private
zposv	subroutine	procedure	utils/math/simple_linalg.f90	155	private
backup_previous_cavgs	subroutine	pure	main/class/simple_classaverager_restore.f90	18	public
test_oris	subroutine	real	main/ori/simple_oris.f90	1697	public
build_cluster2D_stage_cfg	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	140	private
determine_abinitio2D_stages	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	47	public
emit_cluster2D_stage_cfg	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	306	private
mskdiam2lplimits_cluster2D	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	59	public
set_abinitio2D_sampling_policy	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	109	public
set_cline_cluster2D_stage	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	67	public
set_cluster2D_stage_iteration_policy	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	165	private
set_cluster2D_stage_objfun_policy	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	155	private
set_cluster2D_stage_phase_policy	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	174	private
set_cluster2D_stage_reference_policy	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	186	private
set_cluster2D_stage_regular_refs	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	271	private
set_cluster2D_stage_search_policy	subroutine	simple_abinitio2D_controller	main/simple_abinitio2D_controller.f90	283	private
calc_exemplar_mask	subroutine	simple_aff_prop	utils/clustering/simple_aff_prop.f90	273	private
kill	subroutine	simple_aff_prop	utils/clustering/simple_aff_prop.f90	389	private
new	subroutine	simple_aff_prop	utils/clustering/simple_aff_prop.f90	38	private
propagate	subroutine	simple_aff_prop	utils/clustering/simple_aff_prop.f90	79	private
test_aff_prop	subroutine	simple_aff_prop	utils/clustering/simple_aff_prop.f90	303	public
format_str	function	simple_ansi_ctrls	defs/simple_ansi_ctrls.f90	33	public
Z_and_radius_from_name	subroutine	simple_atoms	main/nano/simple_atoms.f90	968	private
assert_close	subroutine	simple_atoms	main/nano/simple_atoms.f90	2199	private
assert_int_eq	subroutine	simple_atoms	main/nano/simple_atoms.f90	2191	private
assert_true	subroutine	simple_atoms	main/nano/simple_atoms.f90	2183	private
assert_vec3_close	subroutine	simple_atoms	main/nano/simple_atoms.f90	2207	private
atom_validate	subroutine	simple_atoms	main/nano/simple_atoms.f90	1966	private
cc_res	function	simple_atoms	main/nano/simple_atoms.f90	1709	private
center_inbox	subroutine	simple_atoms	main/nano/simple_atoms.f90	2045	private
center_pdbcoord	subroutine	simple_atoms	main/nano/simple_atoms.f90	1827	private
cif2mrc	subroutine	simple_atoms	main/nano/simple_atoms.f90	1732	private
cif2pdb	subroutine	simple_atoms	main/nano/simple_atoms.f90	1724	private
convolve	subroutine	simple_atoms	main/nano/simple_atoms.f90	1135	private
copy	subroutine	simple_atoms	main/nano/simple_atoms.f90	584	private
extract_atom	subroutine	simple_atoms	main/nano/simple_atoms.f90	610	private
find_masscen	function	simple_atoms	main/nano/simple_atoms.f90	1697	private
fit_bfactors	subroutine	simple_atoms	main/nano/simple_atoms.f90	997	private
geometry_analysis_pdb	subroutine	simple_atoms	main/nano/simple_atoms.f90	1497	private
get_beta	function	simple_atoms	main/nano/simple_atoms.f90	696	private
get_coord	function	simple_atoms	main/nano/simple_atoms.f90	714	private
get_geom_center	function	simple_atoms	main/nano/simple_atoms.f90	983	private
guess_an_element	subroutine	simple_atoms	main/nano/simple_atoms.f90	948	private
guess_element	subroutine	simple_atoms	main/nano/simple_atoms.f90	939	private
kill	subroutine	simple_atoms	main/nano/simple_atoms.f90	2054	private
map_validate	subroutine	simple_atoms	main/nano/simple_atoms.f90	1838	private
model_validate	subroutine	simple_atoms	main/nano/simple_atoms.f90	1936	private
model_validate_eo	subroutine	simple_atoms	main/nano/simple_atoms.f90	1901	private
new_from_cif	subroutine	simple_atoms	main/nano/simple_atoms.f90	256	private
new_from_file	subroutine	simple_atoms	main/nano/simple_atoms.f90	147	private
new_from_molecule	subroutine	simple_atoms	main/nano/simple_atoms.f90	510	private
new_from_pdb	subroutine	simple_atoms	main/nano/simple_atoms.f90	161	private
new_instance	subroutine	simple_atoms	main/nano/simple_atoms.f90	536	private
pdb2mrc	subroutine	simple_atoms	main/nano/simple_atoms.f90	1745	private
print_atom	subroutine	simple_atoms	main/nano/simple_atoms.f90	845	private
rotate	subroutine	simple_atoms	main/nano/simple_atoms.f90	2039	private
scan_cif	subroutine	simple_atoms	main/nano/simple_atoms.f90	270	private
set_atom_corr	subroutine	simple_atoms	main/nano/simple_atoms.f90	837	private
set_beta	subroutine	simple_atoms	main/nano/simple_atoms.f90	813	private
set_chain	subroutine	simple_atoms	main/nano/simple_atoms.f90	779	private
set_coord	subroutine	simple_atoms	main/nano/simple_atoms.f90	771	private
set_element	subroutine	simple_atoms	main/nano/simple_atoms.f90	796	private
set_name	subroutine	simple_atoms	main/nano/simple_atoms.f90	787	private
set_num	subroutine	simple_atoms	main/nano/simple_atoms.f90	805	private
set_occupancy	subroutine	simple_atoms	main/nano/simple_atoms.f90	829	private
set_resnum	subroutine	simple_atoms	main/nano/simple_atoms.f90	821	private
split_tokens	subroutine	simple_atoms	main/nano/simple_atoms.f90	426	private
strip_digits	function	simple_atoms	main/nano/simple_atoms.f90	240	private
test_atoms	subroutine	simple_atoms	main/nano/simple_atoms.f90	2078	public
translate	subroutine	simple_atoms	main/nano/simple_atoms.f90	2031	private
writepdb	subroutine	simple_atoms	main/nano/simple_atoms.f90	873	private
writepdb_aniso	subroutine	simple_atoms	main/nano/simple_atoms.f90	909	private
build_balanced_index_tree	subroutine	simple_binary_tree	utils/structs/simple_binary_tree.f90	227	private
build_from_hclust	subroutine	simple_binary_tree	utils/structs/simple_binary_tree.f90	139	private
build_range	function	simple_binary_tree	utils/structs/simple_binary_tree.f90	259	private
deserialize_tree	subroutine	simple_binary_tree	utils/structs/simple_binary_tree.f90	314	public
get_node	function	simple_binary_tree	utils/structs/simple_binary_tree.f90	87	private
get_root_node	function	simple_binary_tree	utils/structs/simple_binary_tree.f90	73	private
kill	subroutine	simple_binary_tree	utils/structs/simple_binary_tree.f90	38	private
serialize_tree	subroutine	simple_binary_tree	utils/structs/simple_binary_tree.f90	284	public
assert_idx_valid	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	50	private
build_test_tree	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	26	private
run_all_tree_tests	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	12	public
test_build_balanced_index_tree_deterministic	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	182	private
test_build_from_hclust_basic_invariants	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	78	private
test_get_node_copy_semantics	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	143	private
test_initial_state	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	60	private
test_kill_and_rebuild	subroutine	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	158	private
to_str	function	simple_binary_tree_tester	utils/structs/simple_binary_tree_tester.f90	217	private
add_segment_1	subroutine	simple_binoris	fileio/simple_binoris.f90	438	private
add_segment_2	subroutine	simple_binoris	fileio/simple_binoris.f90	471	private
byte_manager4seg_inside_1	subroutine	simple_binoris	fileio/simple_binoris.f90	298	private
byte_manager4seg_inside_2	subroutine	simple_binoris	fileio/simple_binoris.f90	332	private
clear_segments	subroutine	simple_binoris	fileio/simple_binoris.f90	131	private
close	subroutine	simple_binoris	fileio/simple_binoris.f90	144	private
get_fromto	function	simple_binoris	fileio/simple_binoris.f90	705	private
get_segments_info	subroutine	simple_binoris	fileio/simple_binoris.f90	667	private
open	subroutine	simple_binoris	fileio/simple_binoris.f90	79	private
open_local	subroutine	simple_binoris	fileio/simple_binoris.f90	118	private
read_first_segment_record	subroutine	simple_binoris	fileio/simple_binoris.f90	505	private
read_header	subroutine	simple_binoris	fileio/simple_binoris.f90	155	private
read_record	subroutine	simple_binoris	fileio/simple_binoris.f90	642	private
read_segment_1	subroutine	simple_binoris	fileio/simple_binoris.f90	526	private
read_segment_2	subroutine	simple_binoris	fileio/simple_binoris.f90	614	private
update_byte_ranges	subroutine	simple_binoris	fileio/simple_binoris.f90	491	private
write_header	subroutine	simple_binoris	fileio/simple_binoris.f90	163	private
write_segment_1	subroutine	simple_binoris	fileio/simple_binoris.f90	367	private
write_segment_2	subroutine	simple_binoris	fileio/simple_binoris.f90	413	private
write_segment_inside_1	subroutine	simple_binoris	fileio/simple_binoris.f90	171	private
write_segment_inside_2	subroutine	simple_binoris	fileio/simple_binoris.f90	244	private
binread_ctfparams_state_eo	subroutine	simple_binoris_io	fileio/simple_binoris_io.f90	31	public
binread_nlines	function	simple_binoris_io	fileio/simple_binoris_io.f90	49	public
binread_oritab	subroutine	simple_binoris_io	fileio/simple_binoris_io.f90	13	public
binwrite_oritab	subroutine	simple_binoris_io	fileio/simple_binoris_io.f90	70	public
gen_block_index_tree	function	simple_block_tree	utils/simple_block_tree.f90	113	public
gen_eulspace_block_tree	function	simple_block_tree	utils/simple_block_tree.f90	22	public
gen_eulspace_block_tree_map	function	simple_block_tree	utils/simple_block_tree.f90	68	public
gen_multi_block_index_tree	function	simple_block_tree	utils/simple_block_tree.f90	120	public
gen_single_block_index_tree	function	simple_block_tree	utils/simple_block_tree.f90	128	public
push_stack	subroutine	simple_block_tree	utils/simple_block_tree.f90	191	private
sample_two	function	simple_block_tree	utils/simple_block_tree.f90	332	private
srch_eul_bl_tree	subroutine	simple_block_tree	utils/simple_block_tree.f90	211	public
srch_eul_bl_tree_exhaustive	subroutine	simple_block_tree	utils/simple_block_tree.f90	136	public
srch_eul_bl_tree_prob	subroutine	simple_block_tree	utils/simple_block_tree.f90	275	public
gen_corr_block_tree_aff_prop	function	simple_block_tree_corr	utils/simple_block_tree_corr.f90	118	public
gen_corr_block_tree_hac	function	simple_block_tree_corr	utils/simple_block_tree_corr.f90	18	public
gen_eulspace_block_tree_corr	function	simple_block_tree_corr	utils/simple_block_tree_corr.f90	77	public
read_block_tree	subroutine	simple_block_tree_io	fileio/simple_block_tree_io.f90	125	public
test_io	subroutine	simple_block_tree_io	fileio/simple_block_tree_io.f90	231	public
write_block_tree	subroutine	simple_block_tree_io	fileio/simple_block_tree_io.f90	16	public
a0xy	function	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	278	private
a2xy	function	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	304	private
b3	function	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	214	private
b3_help	function	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	219	private
fill_b	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	134	private
fill_b_3d	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	168	private
fill_r	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	242	private
fill_r_3d	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	330	private
kill_bspline_smoother	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	553	private
new_bspline_smoother	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	33	private
new_bspline_smoother_img	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	38	private
smooth	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	61	private
smooth_3d	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	100	private
test_bspline_smoother	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	385	public
test_bspline_smoother_3d	subroutine	simple_bspline_smoother	utils/filter/simple_bspline_smoother.f90	474	public
build_general_tbox	subroutine	simple_builder	main/simple_builder.f90	231	private
build_rec_eo_tbox	subroutine	simple_builder	main/simple_builder.f90	359	private
build_spproj	subroutine	simple_builder	main/simple_builder.f90	163	private
build_strategy2D_tbox	subroutine	simple_builder	main/simple_builder.f90	377	private
build_strategy3D_tbox	subroutine	simple_builder	main/simple_builder.f90	394	private
init_params_and_build_general_tbox	subroutine	simple_builder	main/simple_builder.f90	130	private
init_params_and_build_spproj	subroutine	simple_builder	main/simple_builder.f90	122	private
init_params_and_build_strategy2D_tbox	subroutine	simple_builder	main/simple_builder.f90	140	private
init_params_and_build_strategy3D_tbox	subroutine	simple_builder	main/simple_builder.f90	151	private
init_params_spproj_tbox2D	subroutine	simple_builder	main/simple_builder.f90	80	private
kill_general_tbox	subroutine	simple_builder	main/simple_builder.f90	328	private
kill_rec_eo_tbox	subroutine	simple_builder	main/simple_builder.f90	369	private
kill_strategy2D_tbox	subroutine	simple_builder	main/simple_builder.f90	386	private
kill_strategy3D_tbox	subroutine	simple_builder	main/simple_builder.f90	418	private
set_field_ptr	subroutine	simple_builder	main/simple_builder.f90	210	private
cleanup_calc_pspec_outputs	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	359	private
cleanup_interface	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	81	private
compute_pspec_channel	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	180	private
create_calc_pspec_strategy	function	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	96	public
distr_cleanup	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	338	private
distr_execute	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	317	private
distr_finalize_run	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	330	private
distr_initialize	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	286	private
ensure_calc_pspec_eo_partition	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	495	private
exec_interface	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	65	private
finalize_interface	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	73	private
init_interface	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	57	private
inmem_cleanup	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	269	private
inmem_execute	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	139	private
inmem_finalize_run	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	261	private
inmem_initialize	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	116	private
read_sigma2_bootstrap_selection	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	438	private
sanity_check_calc_pspec_input	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	479	private
write_sigma2_bootstrap_selection	subroutine	simple_calc_pspec_strategy	main/strategies/parallelization/simple_calc_pspec_strategy.f90	377	private
calc_best_thresholds	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	402	private
eval_threshold	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	424	private
evaluate_cavg_quality	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	43	public
evaluate_cavg_quality_hard_reject	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	76	public
prepare_cavg_quality	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	29	public
write_analysis_class_header	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	312	private
write_analysis_class_row	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	331	private
write_cavg_quality_feature_table	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	229	public
write_cavg_quality_training_table	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	120	public
write_feature_table_class_row	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	349	private
write_model_as_analysis_comments	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	262	private
write_one_threshold	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	389	private
write_threshold_scan_comments	subroutine	simple_cavg_quality_analysis	main/cavg_quality/simple_cavg_quality_analysis.f90	370	private
cavg_quality_feature_description	function	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	124	public
cavg_quality_feature_direction	function	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	131	public
cavg_quality_feature_family	function	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	138	public
cavg_quality_feature_name	function	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	117	public
extract_cavg_quality_features	subroutine	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	156	public
measure_cavg_foreground_geometry	subroutine	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	368	private
measure_cavg_image_metrics	subroutine	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	426	private
normalize_cavg_quality_features	subroutine	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	337	public
validate_quality_context	subroutine	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	272	private
write_cavg_quality_feature_inventory	subroutine	simple_cavg_quality_feats	main/cavg_quality/simple_cavg_quality_feats.f90	145	public
cavg_rejection_reason_string	function	simple_cavg_quality_helpers	main/cavg_quality/simple_cavg_quality_helpers.f90	14	public
abinitio_learn_base_spec	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	600	private
append_feature_family	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	795	private
apply_feature_policy	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	804	private
best_score_threshold_balacc	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2014	private
best_tie_minsep_span	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2334	private
build_logistic_problem	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	252	private
build_policy_caches	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	733	private
calc_suggested_training_weights	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1013	private
classify_training_dataset	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1361	private
classify_training_dataset_cached_detail	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1370	private
classify_training_dataset_detail	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1398	private
collect_learn_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2094	private
consider_model_candidate	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1260	private
dataset_learn_role_name	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1082	private
dataset_short_name	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2077	private
evaluate_candidate_spec	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	700	private
evaluate_cavg_quality_model	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	561	public
evaluate_cavg_quality_result	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	574	public
evaluate_policy_grid	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	679	private
feature_auc_summary	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1783	private
feature_policy_indices	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	823	private
feature_policy_mask	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	773	private
feature_policy_name	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	756	private
fit_logistic_problem	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	379	private
kill_logistic_problem	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	541	private
kill_policy_caches	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	744	private
kill_training_datasets	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2533	private
learn_cavg_quality_model	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	97	public
learn_cavg_quality_pairwise_logistic_model	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	191	private
load_quality_training_datasets	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	618	private
lodo_feature_policy_weights	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1972	private
logistic_cost_wrapper	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	455	private
logistic_dataset_class_weights	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	330	private
logistic_fdf_wrapper	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	483	private
logistic_gradient_wrapper	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	469	private
logistic_problem_fdf	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	496	private
logistic_solution_to_model	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	416	private
map_analysis_columns	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	953	private
min_accept_policy_level	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2445	private
parse_training_metadata_line	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	905	private
policy_level	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2424	private
read_quality_training_dataset	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	839	private
record_top_model_candidate	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1332	private
require_analysis_columns	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	989	private
require_relational_training_datasets	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	649	private
rescue_policy_level	function	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2434	private
score_dataset_feature_policy	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1991	private
select_preferred_best_tie	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1283	private
sort_real_prefix_ascending	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1243	private
validate_quality_context	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	243	private
validate_training_dataset_schemas	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	634	private
write_bool_grid_diagnostic	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2352	private
write_candidate_row	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2514	private
write_candidate_table_header	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2505	private
write_cavg_quality_evaluate_report	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1594	private
write_cavg_quality_learn_report	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1430	private
write_cavg_quality_logistic_learn_report	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1513	private
write_dataset_metric_table	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1686	private
write_evaluate_diagnostic	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2462	private
write_evaluate_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2264	private
write_feature_drop_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1876	private
write_feature_policy_grid	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2481	private
write_feature_policy_lodo_row	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1910	private
write_feature_policy_screen	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1897	private
write_feature_screen_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1748	private
write_feature_signal_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1764	private
write_fixed_model_summary	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1633	private
write_grid_position_diagnostic	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2363	private
write_learn_search_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2199	private
write_logical_list	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2492	private
write_logistic_coefficient_table	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1570	private
write_minsep_diagnostic	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2315	private
write_otsu_ablation_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	1718	private
write_policy_parameter_diagnostics	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2384	private
write_real_list	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2468	private
write_search_diagnostic	subroutine	simple_cavg_quality_learn	main/cavg_quality/simple_cavg_quality_learn.f90	2456	private
accept_fit_as_single_cluster	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1772	private
accumulate_accept_all_confusion	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1725	private
apply_cached_decision_to_quality	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1514	public
apply_pairwise_logistic	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1304	private
build_classify_cache	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1399	public
builtin_names	function	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	156	private
builtin_spec	function	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	138	private
cached_decision_confusion	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1585	public
choose_tied_good_label	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1819	private
chunk100mics_model_spec	function	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	228	private
classify	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	749	private
forced_reason_name	function	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1740	private
get_spec	function	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	195	private
init_preset	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	130	private
init_spec	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	161	private
kill_classify_cache	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1489	public
kill_model	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1272	private
mark_threshold_accepts_all	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1702	private
normalize	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	726	private
otsu_score_threshold	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1841	private
parse_feature_weight_values	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1224	private
parse_model_key_value	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1253	private
parse_real_values	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1132	private
pool_model_spec	function	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	285	private
prepare_cached_decision	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1631	private
read_feature_weights	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1099	private
read_interaction_terms	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1161	private
read_model	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	962	private
read_real_values_keyed	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	1115	private
set_pairwise_interactions_for_feature_count	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	703	private
sieve_model_spec	function	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	481	private
write_cavg_quality_model_builtin_code	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	802	public
write_interaction_terms	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	943	private
write_logistic_spec_assignments	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	862	private
write_model	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	760	private
write_model_real_list	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	926	private
write_model_spec_function	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	838	private
write_real_array_assignment	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	907	private
write_weights_assignment	subroutine	simple_cavg_quality_model	main/cavg_quality/simple_cavg_quality_model.f90	890	private
calculate_promoted_feature	subroutine	simple_cavg_quality_relations	main/cavg_quality/simple_cavg_quality_relations.f90	109	private
calculate_relation_analysis	subroutine	simple_cavg_quality_relations	main/cavg_quality/simple_cavg_quality_relations.f90	45	private
kill_relation_analysis	subroutine	simple_cavg_quality_relations	main/cavg_quality/simple_cavg_quality_relations.f90	177	private
normalize_relation_feature	subroutine	simple_cavg_quality_relations	main/cavg_quality/simple_cavg_quality_relations.f90	153	private
sorted_cc_neighbours	subroutine	simple_cavg_quality_relations	main/cavg_quality/simple_cavg_quality_relations.f90	128	private
test_cavg_quality_relations	subroutine	simple_cavg_quality_relations	main/cavg_quality/simple_cavg_quality_relations.f90	194	public
calc_binary_metrics	subroutine	simple_cavg_quality_stats	main/cavg_quality/simple_cavg_quality_stats.f90	30	public
calc_confusion	subroutine	simple_cavg_quality_stats	main/cavg_quality/simple_cavg_quality_stats.f90	20	public
normalize_quality_dmat	subroutine	simple_cavg_quality_stats	main/cavg_quality/simple_cavg_quality_stats.f90	110	public
reset_cavg_quality_result	subroutine	simple_cavg_quality_types	main/cavg_quality/simple_cavg_quality_types.f90	171	public
run_all_chash_tests	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	14	public
test_chash2str_and_strlen	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	148	private
test_construction_and_kill	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	30	private
test_delete	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	82	private
test_get_by_key_and_index	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	129	private
test_isthere_lookup_reverse	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	108	private
test_move_key_to_front	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	175	private
test_push_and_set_basic	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	44	private
test_set_replaces_existing	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	62	private
test_sort	subroutine	simple_chash_tester	utils/structs/simple_chash_tester.f90	196	private
apply_support_model	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	343	private
get_support_model_metrics	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	156	private
infer	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	205	private
kill	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	114	private
kill_support_model	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	120	private
new	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	108	private
new_support_training_set	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	230	private
preprocess_img	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	263	private
train_1	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	175	private
train_2	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	188	private
update_support_model	subroutine	simple_class_compatibility	main/class/simple_class_compatibility.f90	372	private
init_project_for_cavgs	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	229	private
make_blob_stack	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	253	private
paint_square_blob	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	270	private
run_all_class_compatibility_tests	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	18	public
test_defaults_and_lifecycle	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	29	private
test_infer_rejects_size_outliers	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	139	private
test_infer_without_valid_model_preserves_selection	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	174	private
test_kill_support_model_resets_after_fit	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	201	private
test_train_1_from_project_sets_valid_fit	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	48	private
test_train_1_too_small_set_no_fit	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	79	private
test_train_2_retrain_sets_delta_and_convergence	subroutine	simple_class_compatibility_tester	main/class/simple_class_compatibility_tester.f90	109	private
avg_frc_getter	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	216	private
bound_res	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	107	private
crop	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	340	private
estimate_find_for_eoavg	function	simple_class_frcs	main/class/simple_class_frcs.f90	256	private
estimate_lp_for_align	function	simple_class_frcs	main/class/simple_class_frcs.f90	271	private
estimate_res	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	243	private
frc_getter	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	204	private
get_frc	function	simple_class_frcs	main/class/simple_class_frcs.f90	185	private
getter	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	231	private
kill	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	455	private
new	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	57	private
pad	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	299	private
plot_frcs	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	424	private
print_frcs	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	404	private
raise_exception	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	86	private
read	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	380	private
resample_filter	function	simple_class_frcs	main/class/simple_class_frcs.f90	170	public
set_frc	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	153	private
write	subroutine	simple_class_frcs	main/class/simple_class_frcs.f90	393	private
class_samples_same	function	simple_class_sample_io	fileio/simple_class_sample_io.f90	25	public
deallocate_class_samples	subroutine	simple_class_sample_io	fileio/simple_class_sample_io.f90	147	public
print_class_sample	subroutine	simple_class_sample_io	fileio/simple_class_sample_io.f90	16	public
read_class_samples	subroutine	simple_class_sample_io	fileio/simple_class_sample_io.f90	116	public
serialize_class_sample	function	simple_class_sample_io	fileio/simple_class_sample_io.f90	44	private
unserialize_class_sample	function	simple_class_sample_io	fileio/simple_class_sample_io.f90	68	private
write_class_samples	subroutine	simple_class_sample_io	fileio/simple_class_sample_io.f90	93	public
apply_defaults	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	123	private
apply_split_project_updates	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1089	private
cleanup_interface	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	93	private
collect_split_classes	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	360	private
count_data_lines	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1247	private
create_cls_split_strategy	function	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	102	public
determine_phase_flip	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	412	private
determine_split_label	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	397	private
estimate_icm_rank_stats	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	912	private
exec_interface	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	77	private
finalize_interface	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	85	private
init_common	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	143	private
init_interface	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	69	private
make_split_embedding	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	692	private
master_cleanup	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	308	private
master_execute	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	291	private
master_finalize_run	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	301	private
master_initialize	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	260	private
merge_worker_outputs	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1130	private
prepare_class_partitions	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	324	private
read_int_file	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1286	private
read_part_map	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1265	private
run_icm_rank_seed	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	833	private
run_local_split	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	429	private
sanitize_distance_matrix	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1039	private
sanitize_embedding_coords	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1019	private
select_kmedoids_by_silhouette	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	627	private
shmem_cleanup	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	218	private
shmem_execute	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	200	private
shmem_finalize_run	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	211	private
shmem_initialize	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	192	private
sort_combined_maps	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1328	private
sort_order_by_weight_desc	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	1307	private
split_one_parent_class	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	514	private
trim_split_embedding	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	996	private
update_icm_rank_site	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	942	private
validate_cls_split	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	155	private
worker_cleanup	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	255	private
worker_execute	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	233	private
worker_finalize_run	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	246	private
worker_initialize	subroutine	simple_cls_split_strategy	main/strategies/parallelization/simple_cls_split_strategy.f90	223	private
apply_stream_iteration_policy	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	539	private
cleanup_distributed_iteration_artifacts	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	413	private
cleanup_interface	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	84	private
create_cluster2D_strategy	function	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	94	public
distr_cleanup	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	338	private
distr_execute_iteration	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	243	private
distr_finalize_iteration	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	330	private
distr_finalize_run	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	347	private
distr_initialize	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	217	private
exec_iter_interface	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	60	private
execute_make_cavgs	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	524	private
finalize_iter_interface	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	69	private
finalize_run_interface	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	76	private
gen_jpeg	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	568	private
init_cluster2D_refs	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	368	private
init_interface	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	52	private
init_standard_refs	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	493	private
init_tseries_refs	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	452	private
inmem_cleanup	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	188	private
inmem_execute_iteration	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	136	private
inmem_finalize_iteration	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	181	private
inmem_finalize_run	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	194	private
inmem_initialize	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	110	private
run_distributed_cavg_assembly	subroutine	simple_cluster2D_strategy	main/strategies/parallelization/simple_cluster2D_strategy.f90	427	private
draw	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	300	private
draw_ranked	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	122	private
draw_ranked_uniform	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	366	private
draw_squared	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	317	private
draw_squared_uniform	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	153	private
draw_squared_uniform_projdir	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	226	private
draw_uniform	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	72	private
draw_uniform_corr	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	90	private
gen_labelling	subroutine	simple_cluster_seed	utils/clustering/simple_cluster_seed.f90	18	public
aggregate	subroutine	simple_clustering_utils	utils/clustering/simple_clustering_utils.f90	153	public
cluster_dmat	subroutine	simple_clustering_utils	utils/clustering/simple_clustering_utils.f90	16	public
labels2smat	function	simple_clustering_utils	utils/clustering/simple_clustering_utils.f90	120	public
merge_if_necessary	subroutine	simple_clustering_utils	utils/clustering/simple_clustering_utils.f90	102	private
assign	subroutine	simple_cmdline	main/simple_cmdline.f90	498	private
check	subroutine	simple_cmdline	main/simple_cmdline.f90	632	private
checkvar	subroutine	simple_cmdline	main/simple_cmdline.f90	623	private
cmdline_err	subroutine	simple_cmdline	main/simple_cmdline.f90	873	public
copy	subroutine	simple_cmdline	main/simple_cmdline.f90	471	private
defined	function	simple_cmdline	main/simple_cmdline.f90	742	private
delete	subroutine	simple_cmdline	main/simple_cmdline.f90	607	private
gen_job_descr	subroutine	simple_cmdline	main/simple_cmdline.f90	839	private
get_carg	function	simple_cmdline	main/simple_cmdline.f90	823	private
get_keys	function	simple_cmdline	main/simple_cmdline.f90	777	private
get_rarg	function	simple_cmdline	main/simple_cmdline.f90	790	private
kill	subroutine	simple_cmdline	main/simple_cmdline.f90	857	private
lookup	function	simple_cmdline	main/simple_cmdline.f90	757	private
parse	subroutine	simple_cmdline	main/simple_cmdline.f90	60	private
parse_command_line_value	subroutine	simple_cmdline	main/simple_cmdline.f90	436	private
parse_oldschool	subroutine	simple_cmdline	main/simple_cmdline.f90	385	private
parse_private	subroutine	simple_cmdline	main/simple_cmdline.f90	198	private
parse_private_line	subroutine	simple_cmdline	main/simple_cmdline.f90	296	private
printline	subroutine	simple_cmdline	main/simple_cmdline.f90	675	private
read	subroutine	simple_cmdline	main/simple_cmdline.f90	698	private
set_1	subroutine	simple_cmdline	main/simple_cmdline.f90	505	private
set_2	subroutine	simple_cmdline	main/simple_cmdline.f90	527	private
set_3	subroutine	simple_cmdline	main/simple_cmdline.f90	535	private
set_4	subroutine	simple_cmdline	main/simple_cmdline.f90	557	private
set_5	subroutine	simple_cmdline	main/simple_cmdline.f90	564	private
set_6	subroutine	simple_cmdline	main/simple_cmdline.f90	585	private
writeline	subroutine	simple_cmdline	main/simple_cmdline.f90	714	private
run_all_cmdline_tests	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	15	public
test_copy_and_assignment	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	153	private
test_defined_and_lookup	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	111	private
test_delete_behavior	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	88	private
test_gen_job_descr	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	197	private
test_get_keys	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	132	private
test_read_parsing	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	178	private
test_set_and_get_char_and_string	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	61	private
test_set_and_get_numeric	subroutine	simple_cmdline_tester	main/simple_cmdline_tester.f90	31	private
generic_execute	subroutine	simple_commander_base	main/commanders/simple/simple_commander_base.f90	18	private
clean_ptcl3D_sampling	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	931	private
configure_cavgs_distributed_clines	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	453	private
conv_eo	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	397	private
conv_eo_states	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	424	private
del_pproc_vols	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	351	private
ensure_docked_multistate_particle_assignments	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	1020	private
ensure_multistate_particle_assignments	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	1005	private
exec_abinitio3D	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	487	private
exec_abinitio3D_cavgs	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	32	private
ini3D_from_cavgs	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	1129	private
prepare_state_continue_project	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	935	private
rank_cavgs	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	439	private
read_multistate_assignment_coverage	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	1065	private
reset_ptcl3D_from_ptcl2D_selection	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	979	private
rndstart	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	358	private
run_multistate_missing_update	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	1084	private
strip_distributed_child	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	478	private
sync_distributed_child	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	472	private
validate_cavg_ini_ext_states	subroutine	simple_commanders_abinitio	main/commanders/simple/simple_commanders_abinitio.f90	1177	private
exec_abinitio2D	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	23	private
execute_cluster2D	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	301	private
execute_terminal_prob_pass	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	331	private
gen_final_cavgs	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	363	private
inirefs	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	179	private
output_stats	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	354	private
prep_command_lines	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	286	private
set_dims	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	150	private
set_lplims	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	232	private
set_sampling	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	281	private
write_abinitio_benchmark	subroutine	simple_commanders_abinitio2D	main/commanders/simple/simple_commanders_abinitio2D.f90	402	private
compute_stats	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	296	public
exec_atoms_register	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	129	public
exec_atoms_rmsd	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	558	public
exec_atoms_stats	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	90	public
exec_cif2mrc	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	193	public
exec_cif2pdb	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	206	public
exec_conv_atom_denoise	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	385	public
exec_core_atoms_analysis	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	613	public
exec_crys_score	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	220	public
exec_detect_atoms	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	399	public
exec_map2model_fsc	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	419	public
exec_map_validate	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	447	public
exec_model_validate	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	483	public
exec_model_validate_eo	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	496	public
exec_pdb2mrc	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	527	public
sort_cluster	subroutine	simple_commanders_atoms	main/commanders/simple/simple_commanders_atoms.f90	333	public
annotate_project	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	645	public
build_temp_project_from_stack	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	392	public
exec_cluster_cavgs	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	155	public
exec_cluster_cavgs_selection	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	757	public
exec_map_cavgs_selection	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	1084	public
exec_map_cavgs_states	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	1138	public
exec_match_cavgs	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	936	public
exec_model_cavgs_rejection	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	475	public
exec_rank_cavgs	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	66	public
exec_select_clusters	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	876	public
exec_shape_rank_cavgs	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	1199	public
find_label_state	function	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	1070	public
p1_lt_p2	function	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	1273	public
prep_stack4clust	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	412	public
resolve_quality_context	function	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	731	public
update_project	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	448	public
write_hard_gate_stack	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	678	public
write_quality_stack	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	663	public
write_ranked_quality_stack	subroutine	simple_commanders_cavgs	main/commanders/simple/simple_commanders_cavgs.f90	694	public
check_euler_shift	subroutine	simple_commanders_checks	main/commanders/simple/simple_commanders_checks.f90	71	public
exec_check_box	subroutine	simple_commanders_checks	main/commanders/simple/simple_commanders_checks.f90	40	public
exec_check_nptcls	subroutine	simple_commanders_checks	main/commanders/simple/simple_commanders_checks.f90	57	public
exec_check_stoch_update	subroutine	simple_commanders_checks	main/commanders/simple/simple_commanders_checks.f90	94	public
exec_check_update_frac	subroutine	simple_commanders_checks	main/commanders/simple/simple_commanders_checks.f90	111	public
exec_info_image	subroutine	simple_commanders_checks	main/commanders/simple/simple_commanders_checks.f90	137	public
exec_info_stktab	subroutine	simple_commanders_checks	main/commanders/simple/simple_commanders_checks.f90	171	public
exec_cluster2D	subroutine	simple_commanders_cluster2D	main/commanders/simple/simple_commanders_cluster2D.f90	35	public
exec_cluster2D_distr_worker	subroutine	simple_commanders_cluster2D	main/commanders/simple/simple_commanders_cluster2D.f90	98	public
exec_ppca_denoise_classes	subroutine	simple_commanders_cluster2D	main/commanders/simple/simple_commanders_cluster2D.f90	124	public
log_ppca_rank_scan	subroutine	simple_commanders_cluster2D	main/commanders/simple/simple_commanders_cluster2D.f90	439	public
build_den2raw_map	subroutine	simple_commanders_denoise	main/commanders/simple/simple_commanders_denoise.f90	162	public
copy_assignment_keys	subroutine	simple_commanders_denoise	main/commanders/simple/simple_commanders_denoise.f90	279	public
exec_cls_split	subroutine	simple_commanders_denoise	main/commanders/simple/simple_commanders_denoise.f90	25	public
exec_denoise_project	subroutine	simple_commanders_denoise	main/commanders/simple/simple_commanders_denoise.f90	61	public
exec_map_params_from_den	subroutine	simple_commanders_denoise	main/commanders/simple/simple_commanders_denoise.f90	78	public
validate_den2raw_map	subroutine	simple_commanders_denoise	main/commanders/simple/simple_commanders_denoise.f90	243	public
exec_split	subroutine	simple_commanders_distr	main/commanders/simple/simple_commanders_distr.f90	16	public
consolidate_channel	subroutine	simple_commanders_euclid	main/commanders/simple/simple_commanders_euclid.f90	56	public
exec_calc_group_sigmas	subroutine	simple_commanders_euclid	main/commanders/simple/simple_commanders_euclid.f90	41	public
exec_calc_pspec	subroutine	simple_commanders_euclid	main/commanders/simple/simple_commanders_euclid.f90	20	public
exec_calc_pspec_assemble	subroutine	simple_commanders_euclid_distr	main/commanders/simple/simple_commanders_euclid_distr.f90	16	public
remove_negative_sigmas	subroutine	simple_commanders_euclid_distr	main/commanders/simple/simple_commanders_euclid_distr.f90	163	public
exec_flex_analysis	subroutine	simple_commanders_flex_analysis	main/commanders/simple/simple_commanders_flex_analysis.f90	15	public
doit	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	89	public
doit	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	174	public
exec_binarize	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	40	public
exec_edge_detect	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	124	public
exec_filter	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	240	public
exec_normalize	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	740	public
exec_ppca_denoise	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	366	public
exec_scale	subroutine	simple_commanders_imgops	main/commanders/simple/simple_commanders_imgops.f90	784	public
correct_particles_batch	subroutine	simple_commanders_imgproc	main/commanders/simple/simple_commanders_imgproc.f90	167	public
exec_ctf_correct	subroutine	simple_commanders_imgproc	main/commanders/simple/simple_commanders_imgproc.f90	63	public
exec_ctfops	subroutine	simple_commanders_imgproc	main/commanders/simple/simple_commanders_imgproc.f90	25	public
exec_estimate_diam	subroutine	simple_commanders_imgproc	main/commanders/simple/simple_commanders_imgproc.f90	269	public
update_local_project_copy	subroutine	simple_commanders_imgproc	main/commanders/simple/simple_commanders_imgproc.f90	219	public
exec_auto_spher_mask	subroutine	simple_commanders_mask	main/commanders/simple/simple_commanders_mask.f90	152	public
exec_automask	subroutine	simple_commanders_mask	main/commanders/simple/simple_commanders_mask.f90	117	public
exec_automask2D	subroutine	simple_commanders_mask	main/commanders/simple/simple_commanders_mask.f90	86	public
exec_mask	subroutine	simple_commanders_mask	main/commanders/simple/simple_commanders_mask.f90	30	public
exec_fractionate_movies	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	237	public
exec_fractionate_movies_distr	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	191	public
exec_kstest	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	132	public
exec_mkdir	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	183	public
exec_pearsn	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	158	public
exec_print_dose_weights	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	109	public
exec_print_fsc	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	52	public
exec_print_magic_boxes	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	99	public
read_nrs_dat	subroutine	simple_commanders_misc	main/commanders/simple/simple_commanders_misc.f90	349	public
append_bootstrap_row	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	375	public
append_skipped_class	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	549	public
build_bootstrap_project	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	394	public
clear_parent_sample	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	580	public
collect_bootstrap_classes	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	227	public
derive_bootstrap_output_names	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	483	public
exec_bootstrap_cavgs	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	53	public
exec_cavgassemble	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	791	public
exec_make_cavgs	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	47	public
exec_make_cavgs_distr	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	41	public
exec_unbootstrap_cavgs	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	607	public
exec_write_classes	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	906	public
make_cavgs_exec_cavgassemble	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	779	public
report_bootstrap_class_accounting	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	592	public
run_make_cavgs_workflow	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	748	public
select_bootstrap_anchor	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	289	public
set_bootstrap_class_row	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	471	public
shuffle_ints	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	353	public
validate_evenodd_present	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	268	public
write_bootstrap_outputs	subroutine	simple_commanders_mkcavgs	main/commanders/simple/simple_commanders_mkcavgs.f90	499	public
check_states	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	610	public
exec_make_oris	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	45	public
exec_oriconsensus	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	357	public
exec_oriops	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	103	public
exec_oristats	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	162	public
exec_rotmats2oris	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	422	public
exec_vizoris	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	466	public
generate_perm	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	712	public
read_state_order	subroutine	simple_commanders_ori	main/commanders/simple/simple_commanders_ori.f90	689	public
exec_extract	subroutine	simple_commanders_pick	main/commanders/simple/simple_commanders_pick.f90	61	private
exec_make_pickrefs	subroutine	simple_commanders_pick	main/commanders/simple/simple_commanders_pick.f90	231	private
exec_pick	subroutine	simple_commanders_pick	main/commanders/simple/simple_commanders_pick.f90	42	private
exec_pick_extract	subroutine	simple_commanders_pick	main/commanders/simple/simple_commanders_pick.f90	102	private
exec_reextract	subroutine	simple_commanders_pick	main/commanders/simple/simple_commanders_pick.f90	82	private
exec_ctf_estimate	subroutine	simple_commanders_preprocess	main/commanders/simple/simple_commanders_preprocess.f90	99	public
exec_gen_pspecs_and_thumbs	subroutine	simple_commanders_preprocess	main/commanders/simple/simple_commanders_preprocess.f90	77	public
exec_motion_correct	subroutine	simple_commanders_preprocess	main/commanders/simple/simple_commanders_preprocess.f90	55	public
exec_preprocess	subroutine	simple_commanders_preprocess	main/commanders/simple/simple_commanders_preprocess.f90	33	public
cleanup_prob_align_outputs	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	462	public
cleanup_prob_neigh_workspace	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	143	public
exec_prob_align	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	175	public
exec_prob_align2D	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	389	public
exec_prob_align_neigh	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	260	public
exec_prob_tab	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	39	public
exec_prob_tab2D	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	320	public
exec_prob_tab_neigh	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	101	public
prepare_prob_neigh_workspace	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	135	public
run_prob_tab_neigh_batch	subroutine	simple_commanders_prob	main/commanders/simple/simple_commanders_prob.f90	148	public
exec_export_cavgs	subroutine	simple_commanders_project_cls	main/commanders/simple/simple_commanders_project_cls.f90	49	public
exec_import_cavgs	subroutine	simple_commanders_project_cls	main/commanders/simple/simple_commanders_project_cls.f90	24	public
exec_sample_classes	subroutine	simple_commanders_project_cls	main/commanders/simple/simple_commanders_project_cls.f90	92	public
apply_consensus	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	516	public
best_state_mapping	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	438	public
build_agreement	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	452	public
build_consensus	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	491	public
cleanup	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	571	public
exec_aggregate_chunks	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	638	public
exec_concatenate_projects	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	618	public
exec_extract_subproj	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	682	public
exec_merge_projects	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	282	public
exec_new_project	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	75	public
exec_print_project_field	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	231	public
exec_print_project_info	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	135	public
exec_print_project_vals	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	150	public
exec_ptcl3D_state_consensus	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	323	public
exec_replace_project_field	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	604	public
exec_selection	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	780	public
exec_update_project	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	260	public
exec_validate_projfile	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	589	public
generate_mapping	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	465	public
map_state_correspondence	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	417	public
sanitize_source_labels	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	405	public
write_consensus_report	subroutine	simple_commanders_project_core	main/commanders/simple/simple_commanders_project_core.f90	525	public
exec_import_movies	subroutine	simple_commanders_project_mov	main/commanders/simple/simple_commanders_project_mov.f90	20	public
exec_write_mic_filetab	subroutine	simple_commanders_project_mov	main/commanders/simple/simple_commanders_project_mov.f90	148	public
exec_import_boxes	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	454	public
exec_import_particles	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	50	public
exec_prune_project	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	710	public
exec_prune_project_distr	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	533	public
exec_reimport_particles	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	381	public
exec_scale_project	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	881	public
exec_split_stack	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	977	public
exec_zero_project_shifts	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	514	public
validate_denoised_stack_pair	subroutine	simple_commanders_project_ptcl	main/commanders/simple/simple_commanders_project_ptcl.f90	355	public
accumulate_bootstrap_eo_counts	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	276	public
calc_bootstrap_state_scales	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	241	public
condition_bootstrap_sigma2	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	289	public
exec_bootstrap_rec3D	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	57	public
exec_random_rec	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	379	public
exec_rec3D	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	32	public
exec_rec3D_distr_worker	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	346	public
prepare_bootstrap_rec_cline	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	101	public
register_bootstrap_rec_outputs	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	139	public
warn_for_forced_bootstrap_overrides	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	331	public
write_bootstrap_sigma2_from_halfmaps	subroutine	simple_commanders_rec	main/commanders/simple/simple_commanders_rec.f90	178	public
assemble_state	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	450	private
build_nonuniform_mask	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	502	private
capture_nonuniform_source_halves	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	168	private
carry_forward_dropped_state	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	415	private
cleanup_context	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	795	private
cleanup_nonuniform_state	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	685	private
cleanup_nu_aux_images	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	709	private
cleanup_restore_state	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	244	private
collect_restore_timings	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	725	private
determine_dropped_states	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	370	private
determine_trailing_update_fraction	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	425	private
exec_volassemble	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	256	private
initialize_bench_timers	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	327	private
initialize_context	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	344	private
log_nonuniform_filter_stats	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	648	private
log_nu_alignment_lowpass_summary	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	783	private
nu_highres_steps_fname	function	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	643	private
postprocess_state	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	462	private
prepare_grid_correction	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	444	private
read_previous_halfmaps	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	121	private
record_nu_alignment_lowpass_limit	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	673	private
reduce_partials	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	72	private
refine_nonuniform_filter_bank	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	561	private
refresh_state_populations	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	362	private
release_nonuniform_aux_inputs	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	698	private
release_nonuniform_base_inputs	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	704	private
resolution_outfile_fbody	function	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	149	private
resolve_fsc_txt_fname	function	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	138	private
restore_eos_and_write_fsc	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	96	private
restore_merged_volume	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	192	private
restore_state_from_parts	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	30	private
run_state_automask	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	476	private
run_state_nonuniform_filter	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	485	private
set_state_filenames	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	83	private
setup_nonuniform_filter	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	527	private
sum_eos_after_density_correction_if_needed	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	161	private
sum_eos_before_density_correction_if_needed	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	89	private
trail_restored_halves_if_needed	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	205	private
update_project_nu_alignment_lowpass	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	750	private
update_project_resolution_metadata	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	733	private
write_benchmark	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	830	private
write_nonuniform_outputs	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	653	private
write_nu_highres_steps_for_state	subroutine	simple_commanders_rec_distr	main/commanders/simple/simple_commanders_rec_distr.f90	626	private
exec_reconstruct3D_pcg	subroutine	simple_commanders_reconstruct3D_pcg	main/commanders/simple/simple_commanders_reconstruct3D_pcg.f90	32	private
cleanup_init_vols	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1245	public
configure_refine3D_multi_stages	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	728	public
ensure_all_active_particles_updated	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1128	public
exec_nspace	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	36	public
exec_refine3D	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1258	public
exec_refine3D_auto	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	53	public
exec_refine3D_distr_worker	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1325	public
exec_refine3D_multi	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	529	public
initialize_state_volumes	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	971	public
make_projdir_class_samples	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	896	public
prepare_external_init_vol	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	453	public
prepare_nu_bootstrap_refs_from_raw_halves	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	272	public
prepare_refine3D_multi_class_sampling	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	868	public
prepare_startup_reconstruct3D_cline	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1003	public
read_update_coverage	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1143	public
run_refine3D_multi_missing_update	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1165	public
run_refine3D_multi_stage	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1083	public
seed_refine3D_auto_nonuniform_lpset	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	226	public
set_refine3D_auto_sampling	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	400	public
set_refine3D_multi_downscaling	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	946	public
set_refine3D_multi_nstates	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	742	public
set_refine3D_multi_sampling	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	800	public
validate_input_volumes	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	1043	public
validate_refine3D_multi_combine_eo	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	694	public
validate_refine3D_multi_filtering	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	704	public
validate_refine3D_multi_mode	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	684	public
validate_refine3D_multi_prob_neigh_mode	subroutine	simple_commanders_refine3D	main/commanders/simple/simple_commanders_refine3D.f90	716	public
exec_export_relion	subroutine	simple_commanders_relion	main/commanders/simple/simple_commanders_relion.f90	15	public
exec_reproject	subroutine	simple_commanders_reproject	main/commanders/simple/simple_commanders_reproject.f90	16	public
calc_lplim_final_stage	function	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	418	public
exec_estimate_lpstages	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	388	public
exec_fsc	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	54	public
exec_fsc_area_score	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	108	public
exec_icm2D	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	342	public
exec_icm3D	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	259	public
exec_nu_filt3D	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	194	public
exec_uniform_filter2D	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	308	public
exec_uniform_filter3D	subroutine	simple_commanders_resolest	main/commanders/simple/simple_commanders_resolest.f90	154	public
exec_sieve_ptcls	subroutine	simple_commanders_sieve	main/commanders/simple/simple_commanders_sieve.f90	19	public
exec_simulate_movie	subroutine	simple_commanders_sim	main/commanders/simple/simple_commanders_sim.f90	181	public
exec_simulate_nanoparticle	subroutine	simple_commanders_sim	main/commanders/simple/simple_commanders_sim.f90	413	public
exec_simulate_noise	subroutine	simple_commanders_sim	main/commanders/simple/simple_commanders_sim.f90	37	public
exec_simulate_particles	subroutine	simple_commanders_sim	main/commanders/simple/simple_commanders_sim.f90	61	public
exec_simulate_subtomogram	subroutine	simple_commanders_sim	main/commanders/simple/simple_commanders_sim.f90	386	public
gen_ptcl_pos	function	simple_commanders_sim	main/commanders/simple/simple_commanders_sim.f90	333	public
exec_assign_optics_groups	subroutine	simple_commanders_starproject	main/commanders/simple/simple_commanders_starproject.f90	223	public
exec_export_manifoldem_starproject	subroutine	simple_commanders_starproject	main/commanders/simple/simple_commanders_starproject.f90	202	public
exec_export_starproject	subroutine	simple_commanders_starproject	main/commanders/simple/simple_commanders_starproject.f90	181	public
exec_import_starproject	subroutine	simple_commanders_starproject	main/commanders/simple/simple_commanders_starproject.f90	31	public
exec_cluster_stack	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	324	public
exec_convert	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	37	public
exec_match_stacks	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	388	public
exec_stack	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	69	public
exec_stackops	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	147	public
finish_cleanup	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	313	public
handle_random_selection	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	224	public
handle_state_class_selection	subroutine	simple_commanders_stkops	main/commanders/simple/simple_commanders_stkops.f90	251	public
exec_test_strategy2D	subroutine	simple_commanders_test_class	main/commanders/test/simple_commanders_test_class.f90	33	public
exec_test_ui_hash_test	subroutine	simple_commanders_test_class	main/commanders/test/simple_commanders_test_class.f90	25	public
exec_test_units	subroutine	simple_commanders_test_class	main/commanders/test/simple_commanders_test_class.f90	41	public
simple_test_fit_line	subroutine	simple_commanders_test_class	main/commanders/test/simple_commanders_test_class.f90	184	public
test_euler_shift	subroutine	simple_commanders_test_class	main/commanders/test/simple_commanders_test_class.f90	164	public
test_multinomal	subroutine	simple_commanders_test_class	main/commanders/test/simple_commanders_test_class.f90	137	public
exec_test_corrs2weights_test	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	49	public
exec_test_eval_polarftcc	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	74	public
exec_test_ft_expanded	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	160	public
exec_test_gencorrs_fft	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	170	public
exec_test_order_corr	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	225	public
exec_test_phasecorr	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	253	public
exec_test_rank_weights	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	264	public
exec_test_rotate_ref	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	300	public
fast_rotate_ref	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	390	public
rotate_ref	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	335	public
rotate_ref_2	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	351	public
rotate_ref_t	subroutine	simple_commanders_test_fft	main/commanders/test/simple_commanders_test_fft.f90	374	public
exec_test_angres	subroutine	simple_commanders_test_geometry	main/commanders/test/simple_commanders_test_geometry.f90	39	public
exec_test_ori_test	subroutine	simple_commanders_test_geometry	main/commanders/test/simple_commanders_test_geometry.f90	45	public
exec_test_oris_test	subroutine	simple_commanders_test_geometry	main/commanders/test/simple_commanders_test_geometry.f90	139	public
exec_test_sym_test	subroutine	simple_commanders_test_geometry	main/commanders/test/simple_commanders_test_geometry.f90	177	public
exec_test_uniform_euler	subroutine	simple_commanders_test_geometry	main/commanders/test/simple_commanders_test_geometry.f90	201	public
exec_test_uniform_rot	subroutine	simple_commanders_test_geometry	main/commanders/test/simple_commanders_test_geometry.f90	220	public
rgauss	subroutine	simple_commanders_test_geometry	main/commanders/test/simple_commanders_test_geometry.f90	262	public
exec_test_mini_stream	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	58	public
exec_test_pcg_recon	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	1050	public
exec_test_ptcls_ppca_subproject_distr	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	930	public
exec_test_reproject	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	320	public
exec_test_simulate_particles	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	209	public
exec_test_simulated_workflow	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	430	public
exec_test_subproject_distr	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	779	public
return_to_stage_root	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	763	public
update_project_path	subroutine	simple_commanders_test_highlevel	main/commanders/test/simple_commanders_test_highlevel.f90	759	public
exec_test_imgfile	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	54	public
exec_test_inside_write	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	115	public
exec_test_io	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	136	public
exec_test_io_parallel	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	247	public
exec_test_mrc2jpeg	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	350	public
exec_test_mrc_validate	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	394	public
exec_test_stack_io	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	415	public
exec_test_star_export	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	457	public
exec_test_starfile_test	subroutine	simple_commanders_test_io	main/commanders/test/simple_commanders_test_io.f90	484	public
exec_test_bounds_from_mask3D_test	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	49	public
exec_test_graphene_mask	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	70	public
exec_test_image_bin	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	88	public
exec_test_mask	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	146	public
exec_test_msk_routines	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	165	public
exec_test_nano_mask	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	286	public
exec_test_otsu_test	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	331	public
exec_test_ptcl_center	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	359	public
test_center	subroutine	simple_commanders_test_masks	main/commanders/test/simple_commanders_test_masks.f90	484	public
exec_test_socket_client	subroutine	simple_commanders_test_network	main/commanders/test/simple_commanders_test_network.f90	29	public
exec_test_socket_comm_distr	subroutine	simple_commanders_test_network	main/commanders/test/simple_commanders_test_network.f90	42	public
exec_test_socket_io	subroutine	simple_commanders_test_network	main/commanders/test/simple_commanders_test_network.f90	54	public
exec_test_socket_server	subroutine	simple_commanders_test_network	main/commanders/test/simple_commanders_test_network.f90	95	public
socket_server	subroutine	simple_commanders_test_network	main/commanders/test/simple_commanders_test_network.f90	77	public
exec_test_eigh_test	subroutine	simple_commanders_test_numerics	main/commanders/test/simple_commanders_test_numerics.f90	29	public
exec_test_kbinterpol_fast	subroutine	simple_commanders_test_numerics	main/commanders/test/simple_commanders_test_numerics.f90	56	public
exec_test_maxnloc_test	subroutine	simple_commanders_test_numerics	main/commanders/test/simple_commanders_test_numerics.f90	282	public
exec_test_neigh	subroutine	simple_commanders_test_numerics	main/commanders/test/simple_commanders_test_numerics.f90	316	public
rnd_romat	subroutine	simple_commanders_test_numerics	main/commanders/test/simple_commanders_test_numerics.f90	249	public
costfct	function	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	63	public
costfct	function	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	111	public
exec_test_lbfgsb	subroutine	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	35	public
exec_test_lbfgsb_cosine	subroutine	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	81	public
exec_test_lplims	subroutine	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	135	public
exec_test_lpstages_test	subroutine	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	148	public
exec_test_opt_lp	subroutine	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	159	public
gradfct	subroutine	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	71	public
gradfct	subroutine	simple_commanders_test_optimize	main/commanders/test/simple_commanders_test_optimize.f90	122	public
exec_test_coarrays	subroutine	simple_commanders_test_parallel	main/commanders/test/simple_commanders_test_parallel.f90	30	public
exec_test_openacc	subroutine	simple_commanders_test_parallel	main/commanders/test/simple_commanders_test_parallel.f90	81	public
exec_test_openmp	subroutine	simple_commanders_test_parallel	main/commanders/test/simple_commanders_test_parallel.f90	109	public
exec_test_simd	subroutine	simple_commanders_test_parallel	main/commanders/test/simple_commanders_test_parallel.f90	180	public
exec_test_atoms_stats	subroutine	simple_commanders_test_single	main/commanders/test/simple_commanders_test_single.f90	32	public
exec_test_detect_atoms	subroutine	simple_commanders_test_single	main/commanders/test/simple_commanders_test_single.f90	69	public
exec_test_simulate_nanoparticle	subroutine	simple_commanders_test_single	main/commanders/test/simple_commanders_test_single.f90	96	public
exec_test_single_workflow	subroutine	simple_commanders_test_single	main/commanders/test/simple_commanders_test_single.f90	115	public
exec_test_class_sample_test	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	54	public
exec_test_clustering	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	93	public
exec_test_ctf_test	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	102	public
exec_test_eo_diff	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	122	public
exec_test_extr_frac	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	158	public
exec_test_multinomal_test	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	192	public
exec_test_pca_all	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	219	public
exec_test_pca_imgvar	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	309	public
exec_test_sp_project	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	394	public
make_cs	subroutine	simple_commanders_test_stats	main/commanders/test/simple_commanders_test_stats.f90	73	public
exec_test_ansi_colors	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	69	public
exec_test_binoris_io_test	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	91	public
exec_test_binoris_test	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	85	public
exec_test_cif2mrc	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	97	public
exec_test_cif2pdb	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	114	public
exec_test_cmdline	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	130	public
exec_test_install	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	193	public
exec_test_nice	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	241	public
exec_test_pdb2mrc	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	263	public
exec_test_peak_thres_fdr	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	405	public
exec_test_serialize	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	434	public
exec_test_stringmatch	subroutine	simple_commanders_test_utils	main/commanders/test/simple_commanders_test_utils.f90	456	public
exec_check_refpick	subroutine	simple_commanders_validate	main/commanders/simple/simple_commanders_validate.f90	128	public
exec_mini_stream	subroutine	simple_commanders_validate	main/commanders/simple/simple_commanders_validate.f90	29	public
transfer_phase_fit_args	subroutine	simple_commanders_validate	main/commanders/simple/simple_commanders_validate.f90	241	private
exec_centervol	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	74	public
exec_dock_volpair	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	615	public
exec_noisevol	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	569	public
exec_postprocess	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	385	public
exec_ppca_volvar	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	876	public
exec_sharpvol	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	162	public
exec_symaxis_search	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	655	public
exec_symmetrize_map	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	734	public
exec_symmetry_test	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	824	public
exec_volanalyze	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	430	public
exec_volcluster	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	446	public
exec_volops	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	493	public
postprocess_volume_from_files	subroutine	simple_commanders_volops	main/commanders/simple/simple_commanders_volops.f90	294	public
denoise_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	185	private
fit_covariance_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	151	private
generate_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	232	private
get_eigvals_complex_ppca	function	simple_complex_ppca	main/pca/simple_complex_ppca.f90	249	private
get_feat_complex_ppca	function	simple_complex_ppca	main/pca/simple_complex_ppca.f90	222	private
get_mean_complex_ppca	function	simple_complex_ppca	main/pca/simple_complex_ppca.f90	243	private
hermitian_jacobi	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	292	private
kill_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	260	private
master_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	82	private
new_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	63	private
outer_hermitian	function	simple_complex_ppca	main/pca/simple_complex_ppca.f90	281	private
reconstruct_external_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	201	private
sort_eigs_desc	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	357	private
stream_finalize_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	129	private
stream_reset_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	99	private
stream_update_complex_ppca	subroutine	simple_complex_ppca	main/pca/simple_complex_ppca.f90	112	private
append_stats	subroutine	simple_convergence	main/simple_convergence.f90	526	private
check_conv2D	function	simple_convergence	main/simple_convergence.f90	70	private
check_conv3D	function	simple_convergence	main/simple_convergence.f90	243	private
plot_projdirs	subroutine	simple_convergence	main/simple_convergence.f90	572	private
print_iteration	subroutine	simple_convergence	main/simple_convergence.f90	61	private
read	subroutine	simple_convergence	main/simple_convergence.f90	39	private
df_costfun	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	348	private
fdf	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	377	private
fdf_costfun	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	335	private
init1D	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	83	private
init2D	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	99	private
init4Dcont	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	121	private
kill1D	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	510	private
kill2D	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	517	private
kill4Dcont	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	526	private
minimize	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	206	private
minimize4Dcont	subroutine	simple_ctf_estimate_cost	main/ctf/simple_ctf_estimate_cost.f90	472	private
calc_ctfres	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	895	private
calc_frc	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1051	private
calc_icefrac	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1286	private
calc_pspec_stats	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1244	private
calc_tilt	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	600	private
ctf2pspecimg	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	839	private
fit	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	345	private
fit_patches	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	401	private
fit_polynomial	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1353	private
ft2img	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	876	private
gen_profiles	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1200	private
gen_resmsk	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	552	private
gen_roavspec1d	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	504	private
gen_tiles	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	255	private
get_parms	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	328	private
get_pspec	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	321	private
kill	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1562	private
mask_central_disc	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1229	private
mic2spec	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	468	private
new	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	109	private
norm_pspec	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	489	private
pix2poly	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1383	private
pix2polyvals	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1392	private
plot_ctf	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1410	private
poly	function	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1373	private
rank_spec	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1105	private
read_doc	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	226	private
refine	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	762	private
srch	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	705	private
subtr_backgr	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	802	private
write_diagnostic	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	667	private
write_doc	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1464	private
write_star	subroutine	simple_ctf_estimate_fit	main/ctf/simple_ctf_estimate_fit.f90	1517	private
gen_thumbnail	subroutine	simple_ctf_estimate_iter	main/ctf/simple_ctf_estimate_iter.f90	123	private
iterate	subroutine	simple_ctf_estimate_iter	main/ctf/simple_ctf_estimate_iter.f90	23	private
kill	subroutine	simple_ctf_estimate_iter	main/ctf/simple_ctf_estimate_iter.f90	160	private
cleanup_interface	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	85	private
create_ctf_estimate_strategy	function	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	105	public
distr_cleanup	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	304	private
distr_end_message	function	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	313	private
distr_execute	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	284	private
distr_finalize_run	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	297	private
distr_initialize	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	252	private
endmsg_interface	function	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	92	private
exec_interface	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	71	private
finalize_interface	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	78	private
init_interface	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	64	private
inmem_cleanup	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	235	private
inmem_end_message	function	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	242	private
inmem_execute	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	150	private
inmem_finalize_run	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	228	private
inmem_initialize	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	142	private
set_ctf_estimate_defaults	subroutine	simple_ctf_estimate_strategy	main/strategies/parallelization/simple_ctf_estimate_strategy.f90	125	private
calc_nsampl_fromto	function	simple_decay_funs	utils/math/simple_decay_funs.f90	69	public
calc_update_frac	function	simple_decay_funs	utils/math/simple_decay_funs.f90	13	public
calc_update_frac_dyn	function	simple_decay_funs	utils/math/simple_decay_funs.f90	27	public
cos_decay	function	simple_decay_funs	utils/math/simple_decay_funs.f90	53	public
inv_cos_decay	function	simple_decay_funs	utils/math/simple_decay_funs.f90	61	public
inv_nsampl_decay	function	simple_decay_funs	utils/math/simple_decay_funs.f90	46	public
nsampl_decay	function	simple_decay_funs	utils/math/simple_decay_funs.f90	39	public
set_automask2D_defaults	subroutine	simple_default_clines	defs/simple_default_clines.f90	10	public
set_cluster2D_defaults	subroutine	simple_default_clines	defs/simple_default_clines.f90	18	public
get_element_Z_and_radius	subroutine	simple_defs_atoms	defs/simple_defs_atoms.f90	9	public
get_lattice_params	subroutine	simple_defs_atoms	defs/simple_defs_atoms.f90	223	public
get_oriparam_flag	function	simple_defs_ori	defs/simple_defs_ori.f90	162	public
diffmap_denoise_image_stack	subroutine	simple_denoise_movies	main/motion/simple_denoise_movies.f90	19	public
validate_realspace_2d_stack	subroutine	simple_denoise_movies	main/motion/simple_denoise_movies.f90	64	private
apply_defaults	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	125	private
assign_global_so3_mixtures	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	697	private
build_diffmap_so3_mixture_graphs	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	763	private
calc_diffmap_reconstruction_error	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1197	private
calc_diffmap_residual_energy_ratio	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1170	private
cleanup_interface	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	95	private
count_data_lines	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1533	private
create_denoise_project_strategy	function	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	104	public
estimate_diffmap_denoise_icm_rank_stats	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1005	private
estimate_diffmap_denoise_rank	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	814	private
exec_interface	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	79	private
filter_classes_by_assignment	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	546	private
finalize_diffmap_worker_outputs	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1398	private
finalize_interface	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	87	private
graph_nystrom_residual_preimage	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1089	private
init_common	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	140	private
init_interface	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	71	private
master_cleanup	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	270	private
master_execute	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	253	private
master_finalize_run	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	263	private
master_initialize	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	216	private
pack_diffmap_so3_mixture_pinds	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	731	private
prepare_class_partitions	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	286	private
preserve_diffmap_frc2D	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1389	private
read_diffmap_worker_maps	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1500	private
read_int_file	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1551	private
run_denoise_project	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	321	private
run_diffmap_denoise_icm_rank_seed	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	927	private
run_diffmap_so3_mixture_graphs	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	794	private
select_diffmap_denoise_rank_icm	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	856	private
setup_diffmap_so3_mixture_map	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	681	private
shmem_cleanup	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	174	private
shmem_execute	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	156	private
shmem_finalize_run	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	167	private
shmem_initialize	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	148	private
sort_order_by_weight_desc	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1572	private
update_diffmap_denoise_icm_rank_site	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1035	private
validate_denoise_project	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	402	private
worker_cleanup	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	211	private
worker_execute	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	191	private
worker_finalize_run	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	204	private
worker_initialize	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	179	private
write_diffmap_denoised_class	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	565	private
write_diffmap_partial_project	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1299	private
write_diffmap_project	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1246	private
write_diffmap_stack_image	subroutine	simple_denoise_project_strategy	main/strategies/parallelization/simple_denoise_project_strategy.f90	1228	private
accumulate_pft_angular_mode	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	207	private
calc_diffmap_reconstruction_error	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	710	public
calc_diffmap_residual_energy_ratio	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	683	public
estimate_diffmap_denoise_icm_rank_stats	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	493	private
estimate_diffmap_denoise_rank	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	307	public
extract_pft_angular_mode	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	178	private
graph_coeffproj_denoise	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	29	public
graph_nystrom_residual_preimage	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	587	public
prepare_steerable_pft_params	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	128	private
project_pft_angular_mode	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	145	private
run_diffmap_denoise_icm_rank_seed	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	417	private
scatter_fourier_sample	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	274	private
select_spectral_rank_icm	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	348	public
so2_coeffproj_denoise	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	41	private
synthesize_pft_residual	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	231	private
update_diffmap_denoise_icm_rank_site	subroutine	simple_diff_map_denoise	main/pca/simple_diff_map_denoise.f90	526	private
build_cls_split_graph	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	43	public
build_euclidean_knn_graph	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	65	public
build_gated_euclidean_graph_from_neighbors	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	209	public
build_gated_euclidean_knn_graph	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	94	public
build_orientation_knn_graph	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	267	public
diffmap_graph_degree	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	675	private
estimate_ferguson_bandwidth	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	451	private
find_euclidean_neighbors	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	293	private
find_gated_euclidean_neighbors_rows	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	136	public
find_orientation_neighbors	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	338	private
graph_matvec	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	696	public
insert_neighbor	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	736	private
kill_diffmap_graph	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	724	private
make_singleton_graph	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	568	private
normalize_diffmap_graph	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	593	private
pack_scalar_knn_to_csr	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	362	private
projection_occupancy_weights	subroutine	simple_diff_map_graphs	main/pca/simple_diff_map_graphs.f90	237	public
embed	subroutine	simple_diffusion_maps	main/pca/simple_diffusion_maps.f90	32	private
embed_graph	subroutine	simple_diffusion_maps	main/pca/simple_diffusion_maps.f90	55	public
normalize_coords	subroutine	simple_diffusion_maps	main/pca/simple_diffusion_maps.f90	152	public
set_params	subroutine	simple_diffusion_maps	main/pca/simple_diffusion_maps.f90	25	private
cache_stack_info	subroutine	simple_discrete_stack_io	fileio/simple_discrete_stack_io.f90	52	private
clear_stack_cache	subroutine	simple_discrete_stack_io	fileio/simple_discrete_stack_io.f90	133	private
get_stack_info	subroutine	simple_discrete_stack_io	fileio/simple_discrete_stack_io.f90	118	private
kill	subroutine	simple_discrete_stack_io	fileio/simple_discrete_stack_io.f90	147	private
new	subroutine	simple_discrete_stack_io	fileio/simple_discrete_stack_io.f90	35	private
open_1	subroutine	simple_discrete_stack_io	fileio/simple_discrete_stack_io.f90	95	private
read	subroutine	simple_discrete_stack_io	fileio/simple_discrete_stack_io.f90	64	private
init	subroutine	simple_distr_comm	utils/comm/simple_distr_comm.f90	32	private
server	subroutine	simple_distr_comm	utils/comm/simple_distr_comm.f90	51	private
get_dock_info	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	60	private
kill	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	329	private
new	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	48	private
rotate_target	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	307	private
rotpeak_interp	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	240	private
set_dock_info	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	68	private
set_ref	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	76	private
set_target	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	103	private
setup_srch_spaces	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	122	private
srch	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	132	private
srch_rots	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	138	private
srch_shift	subroutine	simple_dock_vols	main/volume/simple_dock_vols.f90	268	private
decode	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	174	private
decode_frame_7bit_16k	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	354	private
decode_frame_7bit_4k	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	258	private
decode_frame_7bit_8k	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	305	private
decode_frame_8bit_16k	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	472	private
decode_frame_8bit_4k	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	403	private
decode_frame_8bit_8k	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	436	private
decode_frames	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	203	private
get_ldim	function	simple_eer_factory	fileio/simple_eer_factory.f90	548	private
kill	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	567	private
new	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	76	private
prep_gainref	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	508	private
read	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	118	private
set_dims	subroutine	simple_eer_factory	fileio/simple_eer_factory.f90	152	private
simple_error_check	subroutine	simple_error	fileio/simple_error.f90	32	public
simple_exception	subroutine	simple_error	fileio/simple_error.f90	9	public
calc_dose_weights	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	156	public
calc_lpinfo	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	362	private
calc_scaleinfo	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	382	private
calc_scaleinfo	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	431	private
fsc2optlp	function	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	54	public
fsc2optlp_sub	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	66	public
fsc2ssnr	function	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	27	public
fsc2wiener_regularizer	function	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	43	public
gaussian_filter	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	128	public
get_resolution	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	191	public
get_resolution_at_fsc	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	247	public
lowpass_from_klim	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	107	public
lpstages	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	269	public
lpstages_fast	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	399	public
lpstages_setlims	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	442	public
mskdiam2lplimits	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	141	public
mskdiam2streamresthreshold	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	149	public
print_lpinfo	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	376	private
print_scaleinfo	subroutine	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	391	private
ssnr2fsc	function	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	84	public
ssnr2optlp	function	simple_estimate_ssnr	utils/filter/simple_estimate_ssnr.f90	96	public
allocate_ptcls	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	221	private
average_sigma2_groups	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	553	public
calc_sigma2	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	229	private
consolidate_sigma2_groups	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	533	public
consolidate_sigma2_history	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	86	private
fill_sigma2_before_nyq	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	490	public
get_kfromto	function	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	168	private
init_from_group_header	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	141	private
kill	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	589	private
new	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	65	private
parse_key_int_pair	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	465	private
parse_key_string_pair	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	476	private
read_groups	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	184	private
read_groups_starfile	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	308	private
read_part	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	176	private
read_sigma2_groups	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	376	private
sigma2_star_from_iter	function	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	581	public
split_sigma2_into_groups	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	515	public
test_unit	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	604	public
write_groups_starfile	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	263	public
write_info	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	161	private
write_sigma2	subroutine	simple_euclid_sigma2	main/simple_euclid_sigma2.f90	251	private
advance_ref_head	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	651	private
advance_state_head	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	775	private
assign_candidate	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	827	private
assign_current_ref	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	666	private
assign_greedy_state_labels	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	675	private
assign_refs_for_state	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	703	private
begin_write	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	849	private
estimate_shift_seed	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	318	private
fill_tab	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	215	private
fill_tab_range	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	220	private
fill_tab_state_only	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	415	private
fill_tab_state_only_range	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	420	private
flush_candidate_buffers	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	871	private
gather_active_refs	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	691	private
get_particle_context	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	309	private
initialize_storage	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	147	private
kill	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	1108	private
make_ref_candidate	function	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	400	private
new_assignment	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	188	private
new_common	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	120	private
new_compact_global	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	110	private
new_global	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	81	private
new_state	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	91	private
new_worker	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	101	private
prepare_ref_score_vectors	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	573	private
process_particle_with_shift	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	280	private
process_particle_without_shift	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	299	private
read_assignment	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	1072	private
read_state_tab	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	996	private
read_tab_to_glob	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	911	private
record_ref_eval	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	382	private
ref_assign	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	507	private
refine_best_refs	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	357	private
replace_ref_eval	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	391	private
reset_ref_frontier	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	643	private
score_ref	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	335	private
state_assign	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	735	private
write_assignment	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	1060	private
write_state_tab	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	990	private
write_tab	subroutine	simple_eul_prob_tab	main/simple_eul_prob_tab.f90	891	private
advance_class_head	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	722	private
assign_particles_from_frontier	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	613	private
assign_remaining_particles	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	677	private
begin_write	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	934	private
build_sparse_assignment_graph	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	559	private
commit_selected_assignment	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	650	private
dealloc_eval2D_sparse_ws	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	1286	private
fill_tab	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	195	private
fill_tab_prob_snhc	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	325	private
fill_tab_prob_snhc_range	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	330	private
fill_tab_range	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	200	private
finalize_assignment	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	491	private
finalize_candidate_assignment	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	498	private
flush_candidate_buffers	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	955	private
init_eval2D_sparse_ws	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	1276	private
init_frontier	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	630	private
initialize_storage	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	161	private
kill	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	903	private
new_assignment	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	108	private
new_common	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	135	private
new_global	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	88	private
new_worker	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	99	private
process_particle	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	394	private
read_assignment	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	1242	private
read_sparse_tab_to_glob	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	1076	private
read_tab_to_glob	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	997	private
read_tabs_to_glob	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	1157	private
record_sparse_eval	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	473	private
ref_assign_likelihood	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	783	private
ref_assign_sparse_likelihood	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	518	private
refine_best_classes	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	445	private
sample_frontier_likelihood	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	642	private
score_class	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	435	private
sync_frontier_class	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	742	private
update_frontier_after_assignment	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	662	private
write_assignment	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	1231	private
write_tab	subroutine	simple_eul_prob_tab2D	main/simple_eul_prob_tab2D.f90	974	private
add_pooled_subspace	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	565	private
advance_ref_head	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1024	private
alloc_coarse_ws	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1457	private
alloc_eval_stoch_ws	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1367	private
alloc_eval_subspace_ws	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1378	private
assign_greedy_state_labels	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	783	private
assign_particles_for_state	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	825	private
assign_particles_globally	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	750	private
assign_particles_single_state	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	812	private
assign_remaining_particles_from_best_touched_ref	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	866	private
build_geometric_neighborhood	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	459	private
build_pooled_neighborhood	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	528	private
build_sparse_assignment_graph	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	677	private
calc_previous_corr	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	293	private
commit_selected_assignment	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	839	private
consider_peak_subspace	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	496	private
dealloc_coarse_ws	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1469	private
dealloc_eval_ws	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1442	private
estimate_shift_seed	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1279	private
evaluate_direct_stochastic_refs	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	232	private
evaluate_neighborhood	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	579	private
fill_tab_neigh	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	112	private
fill_tab_neigh_range	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	118	private
fill_tab_stoch_range	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	137	private
fill_tab_subspace_range	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	334	private
find_peak_subspaces	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	432	private
get_particle_context	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1252	private
init_eval_stoch_ws	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1391	private
init_eval_subspace_ws	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1405	private
init_frontier	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	771	private
kill_neigh	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1356	private
new_neigh	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	73	private
new_neigh_global	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	82	private
process_particle_stoch	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	213	private
process_particle_subspace	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	407	private
read_sparse_tab_to_glob	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1094	private
read_tabs_to_glob	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1179	private
record_sparse_eval	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1263	private
ref_assign_neigh	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	630	private
refine_best_neighbors	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1302	private
score_direct_ref	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	304	private
score_subspace_ref	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	474	private
seed_fallback_if_empty	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	962	private
sync_frontier_ref	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	1050	private
update_frontier_after_assignment	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	853	private
validate_neigh_mode	subroutine	simple_eul_prob_tab_neigh	main/simple_eul_prob_tab_neigh.f90	91	private
get_full2sub_map	function	simple_eulspace_neigh_map	utils/simple_eulspace_neigh_map.f90	111	private
get_neighbors_list	subroutine	simple_eulspace_neigh_map	utils/simple_eulspace_neigh_map.f90	89	private
get_neighbors_mask	subroutine	simple_eulspace_neigh_map	utils/simple_eulspace_neigh_map.f90	82	private
get_neighbors_mask_pooled	subroutine	simple_eulspace_neigh_map	utils/simple_eulspace_neigh_map.f90	100	private
kill	subroutine	simple_eulspace_neigh_map	utils/simple_eulspace_neigh_map.f90	127	private
new_from_labels	subroutine	simple_eulspace_neigh_map	utils/simple_eulspace_neigh_map.f90	30	private
new_from_spaces	subroutine	simple_eulspace_neigh_map	utils/simple_eulspace_neigh_map.f90	45	private
exec_abinitio3D_commander	subroutine	simple_exec_abinitio3D	main/exec/simple_exec_abinitio3D.f90	21	public
exec_cavgproc_commander	subroutine	simple_exec_cavgproc	main/exec/simple_exec_cavgproc.f90	22	public
exec_cluster2D_commander	subroutine	simple_exec_cluster2D	main/exec/simple_exec_cluster2D.f90	30	public
exec_denoise_commander	subroutine	simple_exec_denoise	main/exec/simple_exec_denoise.f90	27	public
exec_dock_commander	subroutine	simple_exec_dock	main/exec/simple_exec_dock.f90	16	public
exec_filter_commander	subroutine	simple_exec_filter	main/exec/simple_exec_filter.f90	18	public
async_exec	subroutine	simple_exec_helpers	utils/simple_exec_helpers.f90	154	public
copy_project_file_to_root_dir	subroutine	simple_exec_helpers	utils/simple_exec_helpers.f90	235	public
exec_screen	subroutine	simple_exec_helpers	utils/simple_exec_helpers.f90	60	public
gen_exec_cmd	function	simple_exec_helpers	utils/simple_exec_helpers.f90	170	public
restarted_exec	subroutine	simple_exec_helpers	utils/simple_exec_helpers.f90	18	public
script_exec	subroutine	simple_exec_helpers	utils/simple_exec_helpers.f90	185	public
set_master_num_threads	subroutine	simple_exec_helpers	utils/simple_exec_helpers.f90	250	public
update_job_descriptions_in_project	subroutine	simple_exec_helpers	utils/simple_exec_helpers.f90	214	public
exec_image_commander	subroutine	simple_exec_image	main/exec/simple_exec_image.f90	23	public
exec_mask_commander	subroutine	simple_exec_mask	main/exec/simple_exec_mask.f90	16	public
exec_ori_commander	subroutine	simple_exec_ori	main/exec/simple_exec_ori.f90	17	public
exec_other_commander	subroutine	simple_exec_other	main/exec/simple_exec_other.f90	20	public
exec_preproc_commander	subroutine	simple_exec_preproc	main/exec/simple_exec_preproc.f90	24	public
exec_print_commander	subroutine	simple_exec_print	main/exec/simple_exec_print.f90	16	public
exec_project_commander	subroutine	simple_exec_project	main/exec/simple_exec_project.f90	47	public
exec_refine3D_commander	subroutine	simple_exec_refine3D	main/exec/simple_exec_refine3D.f90	25	public
exec_res_commander	subroutine	simple_exec_res	main/exec/simple_exec_res.f90	15	public
exec_sieve_commander	subroutine	simple_exec_sieve	main/exec/simple_exec_sieve.f90	14	public
exec_sim_commander	subroutine	simple_exec_sim	main/exec/simple_exec_sim.f90	19	public
exec_sym_commander	subroutine	simple_exec_sym	main/exec/simple_exec_sym.f90	16	public
exec_validate_commander	subroutine	simple_exec_validate	main/exec/simple_exec_validate.f90	17	public
exec_volume_commander	subroutine	simple_exec_volume	main/exec/simple_exec_volume.f90	19	public
apply_defaults_interface	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	62	private
cleanup_interface	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	89	private
create_extract_strategy	function	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	108	public
distr_apply_defaults	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	543	private
distr_cleanup	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	741	private
distr_end_message	function	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	752	private
distr_execute	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	629	private
distr_finalize_run	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	734	private
distr_initialize	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	550	private
endmsg_interface	function	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	96	private
exec_interface	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	75	private
finalize_interface	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	82	private
init_interface	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	68	private
inmem_apply_defaults	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	165	private
inmem_cleanup	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	527	private
inmem_end_message	function	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	534	private
inmem_execute	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	180	private
inmem_finalize_run	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	520	private
inmem_initialize	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	173	private
killimgbatch	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	499	private
prepimgbatch	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	478	private
set_extract_defaults	subroutine	simple_extract_strategy	main/strategies/parallelization/simple_extract_strategy.f90	128	private
fftw_cleanup	subroutine	simple_fftw3	defs/simple_fftw3.f90	518	public
fftw_cleanup_threads	subroutine	simple_fftw3	defs/simple_fftw3.f90	536	public
fftw_destroy_plan	subroutine	simple_fftw3	defs/simple_fftw3.f90	509	public
fftw_execute_dft	subroutine	simple_fftw3	defs/simple_fftw3.f90	163	public
fftw_execute_dft_c2r	subroutine	simple_fftw3	defs/simple_fftw3.f90	392	public
fftw_execute_dft_r2c	subroutine	simple_fftw3	defs/simple_fftw3.f90	385	public
fftw_execute_r2r	subroutine	simple_fftw3	defs/simple_fftw3.f90	502	public
fftw_execute_split_dft	subroutine	simple_fftw3	defs/simple_fftw3.f90	170	public
fftw_execute_split_dft_c2r	subroutine	simple_fftw3	defs/simple_fftw3.f90	407	public
fftw_execute_split_dft_r2c	subroutine	simple_fftw3	defs/simple_fftw3.f90	399	public
fftw_export_wisdom	subroutine	simple_fftw3	defs/simple_fftw3.f90	554	public
fftw_export_wisdom_to_file	subroutine	simple_fftw3	defs/simple_fftw3.f90	545	public
fftw_flops	subroutine	simple_fftw3	defs/simple_fftw3.f90	621	public
fftw_forget_wisdom	subroutine	simple_fftw3	defs/simple_fftw3.f90	514	public
fftw_fprint_plan	subroutine	simple_fftw3	defs/simple_fftw3.f90	585	public
fftw_free	subroutine	simple_fftw3	defs/simple_fftw3.f90	616	public
fftw_free_str	subroutine	simple_fftw3	defs/simple_fftw3.f90	1252	public
fftw_plan_with_nthreads	subroutine	simple_fftw3	defs/simple_fftw3.f90	527	public
fftw_print_plan	subroutine	simple_fftw3	defs/simple_fftw3.f90	591	public
fftw_set_timelimit	subroutine	simple_fftw3	defs/simple_fftw3.f90	522	public
fftwf_cleanup	subroutine	simple_fftw3	defs/simple_fftw3.f90	1121	public
fftwf_cleanup_threads	subroutine	simple_fftw3	defs/simple_fftw3.f90	1139	public
fftwf_destroy_plan	subroutine	simple_fftw3	defs/simple_fftw3.f90	1112	public
fftwf_execute_dft	subroutine	simple_fftw3	defs/simple_fftw3.f90	766	public
fftwf_execute_dft_c2r	subroutine	simple_fftw3	defs/simple_fftw3.f90	995	public
fftwf_execute_dft_r2c	subroutine	simple_fftw3	defs/simple_fftw3.f90	988	public
fftwf_execute_r2r	subroutine	simple_fftw3	defs/simple_fftw3.f90	1105	public
fftwf_execute_split_dft	subroutine	simple_fftw3	defs/simple_fftw3.f90	773	public
fftwf_execute_split_dft_c2r	subroutine	simple_fftw3	defs/simple_fftw3.f90	1010	public
fftwf_execute_split_dft_r2c	subroutine	simple_fftw3	defs/simple_fftw3.f90	1002	public
fftwf_export_wisdom	subroutine	simple_fftw3	defs/simple_fftw3.f90	1157	public
fftwf_export_wisdom_to_file	subroutine	simple_fftw3	defs/simple_fftw3.f90	1148	public
fftwf_flops	subroutine	simple_fftw3	defs/simple_fftw3.f90	1224	public
fftwf_forget_wisdom	subroutine	simple_fftw3	defs/simple_fftw3.f90	1117	public
fftwf_fprint_plan	subroutine	simple_fftw3	defs/simple_fftw3.f90	1188	public
fftwf_free	subroutine	simple_fftw3	defs/simple_fftw3.f90	1219	public
fftwf_plan_with_nthreads	subroutine	simple_fftw3	defs/simple_fftw3.f90	1130	public
fftwf_print_plan	subroutine	simple_fftw3	defs/simple_fftw3.f90	1194	public
fftwf_set_timelimit	subroutine	simple_fftw3	defs/simple_fftw3.f90	1125	public
run_all_fileio_tests	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	15	public
test_add2fbody_rm_swap_getfbody	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	60	private
test_arr2file_sp_dp_roundtrip	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	232	private
test_arr2txtfile_roundtrip	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	261	private
test_filepath_overloads	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	104	private
test_fname2ext_and_basename	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	44	private
test_fname2format	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	139	private
test_fname2iter	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	126	private
test_fopen_and_fclose_basic	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	196	private
test_get_fpath_and_stemname	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	158	private
test_get_relative_path	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	174	private
test_make_dir_and_file_names	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	82	private
test_nlines_and_filelength	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	211	private
test_read_write_filetable	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	341	private
test_rmat_lmat_roundtrip	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	304	private
test_simple_copy_file	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	409	private
test_simple_list_files_and_regexp	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	493	private
test_simple_mkdir_dir_exists_chdir_getcwd_rmdir	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	435	private
test_simple_touch_rename_abspath	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	468	private
test_write_singlelineoftext_and_read_exit_code	subroutine	simple_fileio_tester	fileio/simple_fileio_tester.f90	378	private
append_level	subroutine	simple_finch	utils/clustering/simple_finch.f90	690	private
finch_get_coarsest_labels	subroutine	simple_finch	utils/clustering/simple_finch.f90	742	private
finch_get_finest_labels	subroutine	simple_finch	utils/clustering/simple_finch.f90	736	private
finch_get_labels	subroutine	simple_finch	utils/clustering/simple_finch.f90	719	private
finch_partition_from_first_neighbors	subroutine	simple_finch	utils/clustering/simple_finch.f90	120	public
finch_representatives	subroutine	simple_finch	utils/clustering/simple_finch.f90	158	public
fit_finch	subroutine	simple_finch	utils/clustering/simple_finch.f90	50	public
grow_ward_heap	subroutine	simple_finch	utils/clustering/simple_finch.f90	571	private
initialize_refinement_nodes	subroutine	simple_finch	utils/clustering/simple_finch.f90	435	private
kill_finch_hierarchy	subroutine	simple_finch	utils/clustering/simple_finch.f90	770	private
kill_ward_heap	subroutine	simple_finch	utils/clustering/simple_finch.f90	598	private
refine_finch_level	subroutine	simple_finch	utils/clustering/simple_finch.f90	274	public
reserve_ward_heap	subroutine	simple_finch	utils/clustering/simple_finch.f90	564	private
select_finch_level	subroutine	simple_finch	utils/clustering/simple_finch.f90	192	public
swap_ward_edges	subroutine	simple_finch	utils/clustering/simple_finch.f90	588	private
trim_hierarchy	subroutine	simple_finch	utils/clustering/simple_finch.f90	707	private
union_components	subroutine	simple_finch	utils/clustering/simple_finch.f90	673	private
ward_heap_pop	subroutine	simple_finch	utils/clustering/simple_finch.f90	528	private
ward_heap_push	subroutine	simple_finch	utils/clustering/simple_finch.f90	505	private
weighted_cluster_centroids	subroutine	simple_finch	utils/clustering/simple_finch.f90	606	private
apply_defaults	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	140	private
build_flex_diffmap_graph	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	170	private
capture_result	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	969	private
cleanup_distributed_analysis_parts	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	869	private
cleanup_interface	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	102	private
collect_target_coefficients	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	657	private
create_flex_analysis_strategy	function	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	119	public
embed_flex_graph	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	791	private
ensure_flex_sigma_support	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	438	private
exec_interface	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	88	private
finalize_interface	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	95	private
finish_analysis_outputs	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	885	private
fit_flex_analysis_embedding	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	545	public
init_common	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	160	private
init_interface	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	81	private
init_model_context	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	425	private
kill_flex_embedding_result	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	111	private
log_flex_coordinate_scales	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	846	private
master_cleanup	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	478	private
master_execute	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	335	private
master_finalize_run	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	471	private
master_initialize	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	325	private
prepare_particle_partitions	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	497	private
prepare_reconstruction_partitions	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	519	private
read_flex_reconstruction_assignment	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	621	private
read_graph_parts	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	746	private
read_int_file	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	695	private
run_flex_analysis	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	561	private
select_flex_spectral_rank	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	829	private
select_particles	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	917	private
shmem_cleanup	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	258	private
shmem_execute	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	207	private
shmem_finalize_run	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	251	private
shmem_initialize	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	197	private
validate_inputs	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	893	private
validate_selected_particles	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	926	private
worker_cleanup	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	320	private
worker_execute	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	275	private
worker_finalize_run	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	313	private
worker_initialize	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	263	private
write_coordinates	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	980	private
write_discrete_state_project	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	1046	private
write_graph_part	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	724	private
write_graph_summary	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	1101	private
write_preimage_particle_map	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	997	private
write_spectrum	subroutine	simple_flex_analysis_strategy	main/flex/simple_flex_analysis_strategy.f90	1085	private
apply_sigma_shell_whitening	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	745	private
assemble_flex_diffmap_feature_parts	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	579	public
flex_projection_directions	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	410	public
map_flex_registered_to_native_project	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	34	public
prepare_flex_diffmap_feature_part	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	350	public
prepare_flex_diffmap_features	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	133	public
read_flex_diffmap_feature_parts	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	428	public
read_mean_projection_stack	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	392	private
write_flex_mean_projection_stack	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	365	public
write_registered_project	subroutine	simple_flex_diffmap_features	main/flex/simple_flex_diffmap_features.f90	681	private
build_flex_preimage_kernel_weights	subroutine	simple_flex_diffmap_preimage	main/flex/simple_flex_diffmap_preimage.f90	59	public
dense_bandwidth	function	simple_flex_diffmap_preimage	main/flex/simple_flex_diffmap_preimage.f90	246	private
median_default_real	function	simple_flex_diffmap_preimage	main/flex/simple_flex_diffmap_preimage.f90	199	private
median_positive_d2	function	simple_flex_diffmap_preimage	main/flex/simple_flex_diffmap_preimage.f90	169	private
raw_neff_state	function	simple_flex_diffmap_preimage	main/flex/simple_flex_diffmap_preimage.f90	149	private
select_flex_diffmap_preimages	subroutine	simple_flex_diffmap_preimage	main/flex/simple_flex_diffmap_preimage.f90	17	public
test_flex_preimage_bandwidth_decoupling	subroutine	simple_flex_diffmap_preimage	main/flex/simple_flex_diffmap_preimage.f90	229	public
cleanup_flex_diffmap_rec_parts	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	569	public
cleanup_reconstructors	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	666	private
flex_part_fname	function	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	681	private
init_basis_reconstructor	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	607	private
init_mean_reconstructor	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	597	private
ll_solve	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	140	private
ll_solve_intercept	function	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	122	private
ll_solve_slope	function	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	131	private
prepare_project_fsc_lowpass_filters	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	429	private
prepare_unfiltered_model_params	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	590	private
reconstruct_flex_diffmap_local_linear_states	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	309	public
reconstruct_flex_diffmap_states	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	199	public
reconstruct_flex_diffmap_weighted_states	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	230	public
reduce_flex_diffmap_rec_parts	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	537	public
test_flex_local_linear_preimage	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	41	public
validate_model_tables	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	580	private
write_flex_diffmap_rec_parts	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	512	public
write_preimage_states	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	617	private
write_state	subroutine	simple_flex_diffmap_rec3D	main/flex/simple_flex_diffmap_rec3D.f90	639	private
accumulate_projected_latent_mstep_2d_block	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	326	private
basis_fourier_energy	function	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1558	public
canonicalize_projected_latent_basis	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1021	public
cap_fplane_for_projected_model	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1456	private
cleanup_plane	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1671	private
cleanup_planes	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1660	public
cleanup_runtime_batch	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1651	private
compute_canonical_transform	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1107	private
finalize_basis_for_projection	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1387	private
hermitian_plane_inner_product	function	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1592	private
infer_latents_from_basis	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	927	public
init_projected_latent_estep_part	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	805	private
init_projected_latent_mstep_2d_block	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	187	private
init_projected_latent_mstep_stats	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	282	private
initialize_latents	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1477	public
insert_projected_latent_mstep_2d_block	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	271	private
kill_projected_latent_estep_part	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	824	private
kill_projected_latent_mstep_2d_block	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	203	private
kill_projected_latent_mstep_stats	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	300	private
latent_covariance	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1539	public
latent_sdev	function	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1530	public
log_comp_seconds	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1698	private
log_seconds	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1691	private
mix_projected_latent_basis	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1151	private
orthonormalize_latents	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1493	public
plane_energy	function	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1619	private
prep_imgs4projected_model	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1430	public
prepare_projected_latent_estep_part	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	854	private
prepare_projected_latent_mstep_2d_block	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	238	private
projected_model_kfromto	function	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1464	public
projected_model_log_prefix	function	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1681	private
read_particles	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1417	private
read_projected_latent_estep_part	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	772	private
reduce_estep_latent_part_files	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	703	public
reduce_projected_latent_estep_part	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	913	private
reduce_projected_latent_mstep_stats_file	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	492	private
regularize_basis_volume	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1405	private
reseed_latent_column	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1517	private
reset_projected_latent_estep_part	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	838	private
reset_projected_latent_mstep_2d_block	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	221	private
solve_coupled_basis_exp	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1251	public
solve_latent_least_squares	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1643	private
solve_real_spd_complex	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1331	private
subtract_plane	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1573	private
subtract_scaled_plane	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1582	private
test_projected_latent_canonicalization	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	1187	public
test_projected_latent_mstep_stats_io	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	562	public
update_basis_from_latents	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	80	public
update_basis_from_mstep_stats_part_files	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	439	public
write_estep_latent_part_file	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	613	public
write_mstep_stats_part_file	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	365	public
write_projected_latent_estep_part	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	749	private
write_projected_latent_mstep_stats	subroutine	simple_flex_projected_latent_model	main/flex/simple_flex_projected_latent_model.f90	338	private
accumulate_plane_oversamp_coupled_stats	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	817	public
accumulate_planes_oversamp_coupled_stats_batch	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	999	public
cleanup_test_plane	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	809	private
ensure_latent_projection_plane	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	1284	private
insert_plane_oversamp_coupled_scaled	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	185	public
insert_plane_oversamp_multi_scaled	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	29	public
insert_planes_oversamp_coupled_batch_scaled	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	367	public
kb_apod_vecs_3d_fast	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	150	private
kb_apod_vecs_3d_fast	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	332	private
kb_apod_vecs_3d_fast	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	546	private
kb_apod_vecs_3d_fast	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	964	private
kb_apod_vecs_3d_fast	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	1165	private
latent_projection_weights	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	1306	private
project_fplane_mean	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	1186	public
project_fplanes_mean_basis	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	1195	public
test_cartesian_projection_contract	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	665	public
test_coupled_batch_accumulation	subroutine	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	567	public
weighted_expanded_cmat	function	simple_flex_reconstructor_latent_ops	main/flex/simple_flex_reconstructor_latent_ops.f90	1347	private
await_final_status	subroutine	simple_forked_process	utils/simple_forked_process.f90	205	private
destroy	subroutine	simple_forked_process	utils/simple_forked_process.f90	221	private
execute_test	subroutine	simple_forked_process	utils/simple_forked_process.f90	189	private
get_failtime	function	simple_forked_process	utils/simple_forked_process.f90	309	private
get_nrestarts	function	simple_forked_process	utils/simple_forked_process.f90	281	private
get_pid	function	simple_forked_process	utils/simple_forked_process.f90	274	private
get_queuetime	function	simple_forked_process	utils/simple_forked_process.f90	288	private
get_starttime	function	simple_forked_process	utils/simple_forked_process.f90	295	private
get_stoptime	function	simple_forked_process	utils/simple_forked_process.f90	302	private
kill	subroutine	simple_forked_process	utils/simple_forked_process.f90	168	private
sigterm_handler	subroutine	simple_forked_process	utils/simple_forked_process.f90	197	private
skip	subroutine	simple_forked_process	utils/simple_forked_process.f90	178	private
start	subroutine	simple_forked_process	utils/simple_forked_process.f90	100	private
status	function	simple_forked_process	utils/simple_forked_process.f90	228	private
terminate	subroutine	simple_forked_process	utils/simple_forked_process.f90	159	private
run_all_forked_process_tests	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	47	public
test_destroy	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	156	private
test_fail_timestamps	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	143	private
test_kill	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	72	private
test_logfile_redirection	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	169	private
test_restart	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	100	private
test_start	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	62	private
test_terminate	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	85	private
test_timestamps	subroutine	simple_forked_process_tester	utils/simple_forked_process_tester.f90	129	private
add_crossing_bars	subroutine	simple_fsc	utils/filter/simple_fsc.f90	392	private
add_curve	subroutine	simple_fsc	utils/filter/simple_fsc.f90	440	private
add_curve_segment	subroutine	simple_fsc	utils/filter/simple_fsc.f90	460	private
add_filled_band	subroutine	simple_fsc	utils/filter/simple_fsc.f90	352	private
add_filled_band_segment	subroutine	simple_fsc	utils/filter/simple_fsc.f90	371	private
add_filled_rect	subroutine	simple_fsc	utils/filter/simple_fsc.f90	423	private
add_invisible_bounds	subroutine	simple_fsc	utils/filter/simple_fsc.f90	341	private
add_segment	subroutine	simple_fsc	utils/filter/simple_fsc.f90	480	private
bar_edges	subroutine	simple_fsc	utils/filter/simple_fsc.f90	405	private
calc_fsc_area_score	subroutine	simple_fsc	utils/filter/simple_fsc.f90	622	private
fibonacci_sphere_dirs	subroutine	simple_fsc	utils/filter/simple_fsc.f90	498	private
kill	subroutine	simple_fsc	utils/filter/simple_fsc.f90	658	private
new	subroutine	simple_fsc	utils/filter/simple_fsc.f90	597	private
phase_rand_fsc	subroutine	simple_fsc	utils/filter/simple_fsc.f90	42	public
plot_fsc	subroutine	simple_fsc	utils/filter/simple_fsc.f90	100	public
plot_fsc2	subroutine	simple_fsc	utils/filter/simple_fsc.f90	138	public
plot_fsc_area_score	subroutine	simple_fsc	utils/filter/simple_fsc.f90	239	public
plot_phrand_fsc	subroutine	simple_fsc	utils/filter/simple_fsc.f90	182	public
score_cfsc_curve	subroutine	simple_fsc	utils/filter/simple_fsc.f90	514	private
write_fsc_area_score_outputs	subroutine	simple_fsc	utils/filter/simple_fsc.f90	539	public
add	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	207	private
add2cmat	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	229	private
add_uncond	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	222	private
alloc_and_calc_tmp_cmat12	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	402	private
copy	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	190	private
corr	function	simple_ft_expanded	main/image/simple_ft_expanded.f90	338	private
corr_fdfshifted_cost_8	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	499	private
corr_gshifted_cost_8	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	463	private
corr_normalize_dp	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	386	private
corr_normalize_sp	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	380	private
corr_shifted_cost_8	function	simple_ft_expanded	main/image/simple_ft_expanded.f90	428	private
corr_unnorm	function	simple_ft_expanded	main/image/simple_ft_expanded.f90	353	private
corr_unnorm_serial	function	simple_ft_expanded	main/image/simple_ft_expanded.f90	373	private
dealloc_tmp_cmat12	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	422	private
div	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	249	private
ftexp_transfmat_init	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	555	public
ftexp_transfmat_kill	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	598	public
get_flims	function	simple_ft_expanded	main/image/simple_ft_expanded.f90	163	private
get_hp_lp	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	392	private
kill	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	544	private
new	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	70	private
normalize_mat	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	327	private
set_cmat	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	176	private
shift	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	259	private
shift_and_add	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	300	private
subtr	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	238	private
zero	subroutine	simple_ft_expanded	main/image/simple_ft_expanded.f90	183	private
ftexp_shsrch_cost_8	function	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	158	private
ftexp_shsrch_fdfcost_8	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	187	private
ftexp_shsrch_gcost_8	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	172	private
ftexp_shsrch_kill	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	117	private
ftexp_shsrch_minimize	function	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	81	private
ftexp_shsrch_new	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	40	private
profile_corrs	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	315	private
set_factr_pgtol	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	141	private
set_shsrch_tol	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	135	private
test_ftexp_shsrch	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	206	public
test_ftexp_shsrch2	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	365	public
test_shifted_correlator	subroutine	simple_ftexp_shsrch	main/image/simple_ftexp_shsrch.f90	242	private
cleanup_interface	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	86	private
create_gen_pspecs_and_thumbs_strategy	function	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	106	public
distr_cleanup	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	270	private
distr_end_message	function	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	279	private
distr_execute	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	250	private
distr_finalize_run	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	263	private
distr_initialize	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	218	private
endmsg_interface	function	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	93	private
exec_interface	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	72	private
finalize_interface	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	79	private
init_interface	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	65	private
inmem_cleanup	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	201	private
inmem_end_message	function	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	208	private
inmem_execute	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	144	private
inmem_finalize_run	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	194	private
inmem_initialize	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	136	private
set_gen_pspecs_and_thumbs_defaults	subroutine	simple_gen_pspecs_and_thumbs_strategy	main/strategies/parallelization/simple_gen_pspecs_and_thumbs_strategy.f90	126	private
prep2D_inv_instrfun4mul	function	simple_gridding	main/interp/simple_gridding.f90	18	public
prep3D_inv_instrfun4mul	function	simple_gridding	main/interp/simple_gridding.f90	65	public
assemble_stream_heartbeat	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	138	private
assemble_stream_initial_picking	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	342	private
assemble_stream_opening2D	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	447	private
assemble_stream_optics_assignment	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	298	private
assemble_stream_particle_sieving	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	506	private
assemble_stream_pool2D	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	567	private
assemble_stream_preprocess	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	222	private
assemble_stream_reference_picking	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	386	private
clear_hashes	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	125	private
forked_process_status	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	184	private
is_associated	function	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	635	private
kill	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	113	private
new	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	99	private
set_stoptime	subroutine	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	619	private
to_string	function	simple_gui_assembler	utils/gui/simple_gui_assembler.f90	625	private
run_all_gui_assembler_tests	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	66	public
test_clear_hashes	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	123	private
test_initial_picking	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	249	private
test_new_kill	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	84	private
test_new_kill_reuse	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	94	private
test_opening2D	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	324	private
test_optics_assignment	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	214	private
test_particle_sieving	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	359	private
test_pool2D	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	407	private
test_preprocess	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	157	private
test_reference_picking	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	281	private
test_set_stoptime	subroutine	simple_gui_assembler_tester	utils/gui/simple_gui_assembler_tester.f90	109	private
assigned	function	simple_gui_metadata_base	utils/gui/metadata/simple_gui_metadata_base.f90	82	private
initialized	function	simple_gui_metadata_base	utils/gui/metadata/simple_gui_metadata_base.f90	75	private
jsonise	function	simple_gui_metadata_base	utils/gui/metadata/simple_gui_metadata_base.f90	102	private
kill	subroutine	simple_gui_metadata_base	utils/gui/metadata/simple_gui_metadata_base.f90	57	private
new	subroutine	simple_gui_metadata_base	utils/gui/metadata/simple_gui_metadata_base.f90	49	private
serialise	subroutine	simple_gui_metadata_base	utils/gui/metadata/simple_gui_metadata_base.f90	92	private
type	function	simple_gui_metadata_base	utils/gui/metadata/simple_gui_metadata_base.f90	67	private
get	function	simple_gui_metadata_cavg2D	utils/gui/metadata/simple_gui_metadata_cavg2D.f90	100	private
get_i	function	simple_gui_metadata_cavg2D	utils/gui/metadata/simple_gui_metadata_cavg2D.f90	126	private
get_i_max	function	simple_gui_metadata_cavg2D	utils/gui/metadata/simple_gui_metadata_cavg2D.f90	133	private
get_idx	function	simple_gui_metadata_cavg2D	utils/gui/metadata/simple_gui_metadata_cavg2D.f90	119	private
jsonise_override	function	simple_gui_metadata_cavg2D	utils/gui/metadata/simple_gui_metadata_cavg2D.f90	143	private
set	subroutine	simple_gui_metadata_cavg2D	utils/gui/metadata/simple_gui_metadata_cavg2D.f90	74	private
get	function	simple_gui_metadata_histogram	utils/gui/metadata/simple_gui_metadata_histogram.f90	65	private
jsonise_override	function	simple_gui_metadata_histogram	utils/gui/metadata/simple_gui_metadata_histogram.f90	83	private
set	subroutine	simple_gui_metadata_histogram	utils/gui/metadata/simple_gui_metadata_histogram.f90	47	private
clear_coordinates	subroutine	simple_gui_metadata_micrograph	utils/gui/metadata/simple_gui_metadata_micrograph.f90	92	private
get	function	simple_gui_metadata_micrograph	utils/gui/metadata/simple_gui_metadata_micrograph.f90	105	private
get_i	function	simple_gui_metadata_micrograph	utils/gui/metadata/simple_gui_metadata_micrograph.f90	122	private
get_i_max	function	simple_gui_metadata_micrograph	utils/gui/metadata/simple_gui_metadata_micrograph.f90	129	private
jsonise_override	function	simple_gui_metadata_micrograph	utils/gui/metadata/simple_gui_metadata_micrograph.f90	139	private
set	subroutine	simple_gui_metadata_micrograph	utils/gui/metadata/simple_gui_metadata_micrograph.f90	61	private
set_coordinate	subroutine	simple_gui_metadata_micrograph	utils/gui/metadata/simple_gui_metadata_micrograph.f90	77	private
get	function	simple_gui_metadata_optics_group	utils/gui/metadata/simple_gui_metadata_optics_group.f90	72	private
get_i	function	simple_gui_metadata_optics_group	utils/gui/metadata/simple_gui_metadata_optics_group.f90	88	private
get_i_max	function	simple_gui_metadata_optics_group	utils/gui/metadata/simple_gui_metadata_optics_group.f90	95	private
get_max_points	function	simple_gui_metadata_optics_group	utils/gui/metadata/simple_gui_metadata_optics_group.f90	102	private
jsonise_override	function	simple_gui_metadata_optics_group	utils/gui/metadata/simple_gui_metadata_optics_group.f90	112	private
set	subroutine	simple_gui_metadata_optics_group	utils/gui/metadata/simple_gui_metadata_optics_group.f90	52	private
get	function	simple_gui_metadata_stream_opening2D	utils/gui/metadata/stream/simple_gui_metadata_stream_opening2D.f90	96	private
jsonise_override	function	simple_gui_metadata_stream_opening2D	utils/gui/metadata/stream/simple_gui_metadata_stream_opening2D.f90	112	private
set	subroutine	simple_gui_metadata_stream_opening2D	utils/gui/metadata/stream/simple_gui_metadata_stream_opening2D.f90	64	private
set_user_input	subroutine	simple_gui_metadata_stream_opening2D	utils/gui/metadata/stream/simple_gui_metadata_stream_opening2D.f90	86	private
get	function	simple_gui_metadata_stream_optics_assignment	utils/gui/metadata/stream/simple_gui_metadata_stream_optics_assignment.f90	69	private
jsonise_override	function	simple_gui_metadata_stream_optics_assignment	utils/gui/metadata/stream/simple_gui_metadata_stream_optics_assignment.f90	87	private
set	subroutine	simple_gui_metadata_stream_optics_assignment	utils/gui/metadata/stream/simple_gui_metadata_stream_optics_assignment.f90	53	private
clear_selection	subroutine	simple_gui_metadata_stream_particle_sieving	utils/gui/metadata/stream/simple_gui_metadata_stream_particle_sieving.f90	100	private
get	function	simple_gui_metadata_stream_particle_sieving	utils/gui/metadata/stream/simple_gui_metadata_stream_particle_sieving.f90	110	private
jsonise_override	function	simple_gui_metadata_stream_particle_sieving	utils/gui/metadata/stream/simple_gui_metadata_stream_particle_sieving.f90	129	private
set	subroutine	simple_gui_metadata_stream_particle_sieving	utils/gui/metadata/stream/simple_gui_metadata_stream_particle_sieving.f90	64	private
set_selection	subroutine	simple_gui_metadata_stream_particle_sieving	utils/gui/metadata/stream/simple_gui_metadata_stream_particle_sieving.f90	89	private
set_user_input	subroutine	simple_gui_metadata_stream_particle_sieving	utils/gui/metadata/stream/simple_gui_metadata_stream_particle_sieving.f90	79	private
get	function	simple_gui_metadata_stream_picking	utils/gui/metadata/stream/simple_gui_metadata_stream_picking.f90	81	private
jsonise_override	function	simple_gui_metadata_stream_picking	utils/gui/metadata/stream/simple_gui_metadata_stream_picking.f90	104	private
set	subroutine	simple_gui_metadata_stream_picking	utils/gui/metadata/stream/simple_gui_metadata_stream_picking.f90	58	private
get	function	simple_gui_metadata_stream_pool2D	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D.f90	111	private
jsonise_override	function	simple_gui_metadata_stream_pool2D	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D.f90	137	private
set	subroutine	simple_gui_metadata_stream_pool2D	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D.f90	69	private
set_initial_ref_selection	subroutine	simple_gui_metadata_stream_pool2D	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D.f90	99	private
set_user_input	subroutine	simple_gui_metadata_stream_pool2D	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D.f90	91	private
get	function	simple_gui_metadata_stream_pool2D_snapshot	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D_snapshot.f90	67	private
jsonise_override	function	simple_gui_metadata_stream_pool2D_snapshot	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D_snapshot.f90	84	private
set	subroutine	simple_gui_metadata_stream_pool2D_snapshot	utils/gui/metadata/stream/simple_gui_metadata_stream_pool2D_snapshot.f90	51	private
get	function	simple_gui_metadata_stream_preprocess	utils/gui/metadata/stream/simple_gui_metadata_stream_preprocess.f90	84	private
jsonise_override	function	simple_gui_metadata_stream_preprocess	utils/gui/metadata/stream/simple_gui_metadata_stream_preprocess.f90	112	private
set	subroutine	simple_gui_metadata_stream_preprocess	utils/gui/metadata/stream/simple_gui_metadata_stream_preprocess.f90	58	private
get_astigmatism_update	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	122	private
get_ctfres_update	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	106	private
get_icescore_update	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	138	private
get_increase_nmics	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	154	private
get_mskdiam2D_update	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	281	private
get_pickrefs_clusters	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	198	private
get_pickrefs_selection	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	174	private
get_pickrefs_selection_length	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	221	private
get_sieverefs_selection	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	242	private
get_sieverefs_selection_length	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	265	private
get_snapshot2D_update	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	306	private
has_snapshot2D_update	function	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	324	private
set_astigmatism_update	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	113	private
set_ctfres_update	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	97	private
set_icescore_update	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	129	private
set_increase_nmics	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	145	private
set_mskdiam2D_update	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	272	private
set_pickrefs_clusters	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	186	private
set_pickrefs_selection	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	161	private
set_pickrefs_selection_length	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	210	private
set_sieverefs_selection	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	229	private
set_sieverefs_selection_length	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	254	private
set_snapshot2D_update	subroutine	simple_gui_metadata_stream_update	utils/gui/metadata/stream/simple_gui_metadata_stream_update.f90	288	private
run_all_gui_metadata_tests	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	39	public
test_jsonise_cavg2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	514	private
test_jsonise_histogram	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	240	private
test_jsonise_micrograph	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	156	private
test_jsonise_optics_group	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	426	private
test_jsonise_stream_initial_picking	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	872	private
test_jsonise_stream_opening2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1042	private
test_jsonise_stream_optics_assignment	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	675	private
test_jsonise_stream_particle_sieving	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1126	private
test_jsonise_stream_pool2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1218	private
test_jsonise_stream_pool2D_snapshot	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1291	private
test_jsonise_stream_preprocess	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	601	private
test_jsonise_stream_reference_picking	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	961	private
test_jsonise_stream_update	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	792	private
test_jsonise_timeplot	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	334	private
test_new_kill	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	90	private
test_serialise	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	101	private
test_serialise_cavg2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	495	private
test_serialise_histogram	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	214	private
test_serialise_micrograph	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	139	private
test_serialise_optics_group	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	401	private
test_serialise_stream_initial_picking	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	852	private
test_serialise_stream_opening2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1022	private
test_serialise_stream_optics_assignment	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	657	private
test_serialise_stream_particle_sieving	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1106	private
test_serialise_stream_pool2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1198	private
test_serialise_stream_pool2D_snapshot	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1272	private
test_serialise_stream_preprocess	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	581	private
test_serialise_stream_reference_picking	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	941	private
test_serialise_stream_update	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	766	private
test_serialise_timeplot	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	308	private
test_set_get_cavg2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	464	private
test_set_get_histogram	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	186	private
test_set_get_micrograph	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	118	private
test_set_get_optics_group	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	373	private
test_set_get_stream_initial_picking	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	820	private
test_set_get_stream_opening2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	998	private
test_set_get_stream_optics_assignment	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	634	private
test_set_get_stream_particle_sieving	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1075	private
test_set_get_stream_pool2D	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1160	private
test_set_get_stream_pool2D_snapshot	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	1252	private
test_set_get_stream_preprocess	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	547	private
test_set_get_stream_reference_picking	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	909	private
test_set_get_stream_update	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	710	private
test_set_get_timeplot	subroutine	simple_gui_metadata_tester	utils/gui/metadata/simple_gui_metadata_tester.f90	279	private
get	function	simple_gui_metadata_timeplot	utils/gui/metadata/simple_gui_metadata_timeplot.f90	75	private
jsonise_override	function	simple_gui_metadata_timeplot	utils/gui/metadata/simple_gui_metadata_timeplot.f90	93	private
set	subroutine	simple_gui_metadata_timeplot	utils/gui/metadata/simple_gui_metadata_timeplot.f90	50	private
max_metadata_size	function	simple_gui_metadata_utils	utils/gui/metadata/simple_gui_metadata_utils.f90	25	public
mic2thumb	subroutine	simple_gui_utils	utils/gui/simple_gui_utils.f90	10	public
mrc2jpeg_tiled	subroutine	simple_gui_utils	utils/gui/simple_gui_utils.f90	44	public
create_section_array	subroutine	simple_guistats	utils/gui/simple_guistats.f90	461	private
deactivate_section	subroutine	simple_guistats	utils/gui/simple_guistats.f90	105	private
delete	subroutine	simple_guistats	utils/gui/simple_guistats.f90	346	private
ensure_section	subroutine	simple_guistats	utils/gui/simple_guistats.f90	79	private
generate_2D_jpeg	subroutine	simple_guistats	utils/gui/simple_guistats.f90	592	private
generate_2D_thumbnail	subroutine	simple_guistats	utils/gui/simple_guistats.f90	531	private
get_1	subroutine	simple_guistats	utils/gui/simple_guistats.f90	326	private
get_keyline	function	simple_guistats	utils/gui/simple_guistats.f90	127	private
hide	subroutine	simple_guistats	utils/gui/simple_guistats.f90	356	private
init	subroutine	simple_guistats	utils/gui/simple_guistats.f90	45	private
kill	subroutine	simple_guistats	utils/gui/simple_guistats.f90	418	private
merge	subroutine	simple_guistats	utils/gui/simple_guistats.f90	366	private
new_section	subroutine	simple_guistats	utils/gui/simple_guistats.f90	62	private
set_1	subroutine	simple_guistats	utils/gui/simple_guistats.f90	153	private
set_2	subroutine	simple_guistats	utils/gui/simple_guistats.f90	199	private
set_3	subroutine	simple_guistats	utils/gui/simple_guistats.f90	245	private
set_now	subroutine	simple_guistats	utils/gui/simple_guistats.f90	307	private
write	subroutine	simple_guistats	utils/gui/simple_guistats.f90	399	private
write_json	subroutine	simple_guistats	utils/gui/simple_guistats.f90	424	private
run_all_hash_tests	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	14	public
test_constructor_and_kill	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	30	private
test_copy_and_realloc	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	211	private
test_delete	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	78	private
test_get_keys_and_get_str	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	161	private
test_getters_numeric	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	126	private
test_hash2str_and_strlen	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	190	private
test_lookup_and_isthere	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	106	private
test_push_and_set	subroutine	simple_hash_tester	utils/structs/simple_hash_tester.f90	46	private
cluster	subroutine	simple_hclust	utils/clustering/simple_hclust.f90	56	private
cut_tree	subroutine	simple_hclust	utils/clustering/simple_hclust.f90	168	private
get_medoids	subroutine	simple_hclust	utils/clustering/simple_hclust.f90	135	private
kill	subroutine	simple_hclust	utils/clustering/simple_hclust.f90	199	private
new	subroutine	simple_hclust	utils/clustering/simple_hclust.f90	34	private
test_hclust	subroutine	simple_hclust	utils/clustering/simple_hclust.f90	211	public
add	subroutine	simple_histogram	utils/math/simple_histogram.f90	278	private
div	subroutine	simple_histogram	utils/math/simple_histogram.f90	288	private
kill	subroutine	simple_histogram	utils/math/simple_histogram.f90	565	private
new_1	subroutine	simple_histogram	utils/math/simple_histogram.f90	57	private
new_2	subroutine	simple_histogram	utils/math/simple_histogram.f90	83	private
new_3	subroutine	simple_histogram	utils/math/simple_histogram.f90	92	private
new_4	subroutine	simple_histogram	utils/math/simple_histogram.f90	108	private
new_5	subroutine	simple_histogram	utils/math/simple_histogram.f90	143	private
plot	subroutine	simple_histogram	utils/math/simple_histogram.f90	469	private
quantize	subroutine	simple_histogram	utils/math/simple_histogram.f90	187	private
reset	subroutine	simple_histogram	utils/math/simple_histogram.f90	168	private
smooth	subroutine	simple_histogram	utils/math/simple_histogram.f90	435	private
topdf	subroutine	simple_histogram	utils/math/simple_histogram.f90	427	private
update	subroutine	simple_histogram	utils/math/simple_histogram.f90	297	private
zero	subroutine	simple_histogram	utils/math/simple_histogram.f90	179	private
initialised	function	simple_http_post	utils/comm/simple_http_post.f90	97	private
kill	subroutine	simple_http_post	utils/comm/simple_http_post.f90	89	private
new	subroutine	simple_http_post	utils/comm/simple_http_post.f90	78	private
request	function	simple_http_post	utils/comm/simple_http_post.f90	107	private
response_callback	function	simple_http_post	utils/comm/simple_http_post.f90	183	private
run_all_http_post_tests	subroutine	simple_http_post_tester	utils/comm/simple_http_post_tester.f90	39	public
test_create_and_kill	subroutine	simple_http_post_tester	utils/comm/simple_http_post_tester.f90	50	private
test_request_no_body	subroutine	simple_http_post_tester	utils/comm/simple_http_post_tester.f90	63	private
test_request_with_body	subroutine	simple_http_post_tester	utils/comm/simple_http_post_tester.f90	84	private
test_response_reset	subroutine	simple_http_post_tester	utils/comm/simple_http_post_tester.f90	104	private
apply_mask	subroutine	simple_image_bin	main/image/simple_image_bin.f90	629	private
border_mask	subroutine	simple_image_bin	main/image/simple_image_bin.f90	713	private
cc2bin	subroutine	simple_image_bin	main/image/simple_image_bin.f90	647	private
copy_bimg	subroutine	simple_image_bin	main/image/simple_image_bin.f90	80	private
cos_edge	subroutine	simple_image_bin	main/image/simple_image_bin.f90	890	private
dequeue	subroutine	simple_image_bin	main/image/simple_image_bin.f90	212	private
diameter_bin	subroutine	simple_image_bin	main/image/simple_image_bin.f90	544	private
diameter_cc	subroutine	simple_image_bin	main/image/simple_image_bin.f90	495	private
dilate	subroutine	simple_image_bin	main/image/simple_image_bin.f90	663	private
elim_cc	subroutine	simple_image_bin	main/image/simple_image_bin.f90	331	private
elim_ccs	subroutine	simple_image_bin	main/image/simple_image_bin.f90	356	private
elim_largestcc	subroutine	simple_image_bin	main/image/simple_image_bin.f90	295	private
empty_queue	subroutine	simple_image_bin	main/image/simple_image_bin.f90	227	private
enqueue	subroutine	simple_image_bin	main/image/simple_image_bin.f90	200	private
erode	subroutine	simple_image_bin	main/image/simple_image_bin.f90	685	private
feret_minmax	subroutine	simple_image_bin	main/image/simple_image_bin.f90	551	private
find_ccs	subroutine	simple_image_bin	main/image/simple_image_bin.f90	164	private
flood_fill	subroutine	simple_image_bin	main/image/simple_image_bin.f90	232	private
get_imat	subroutine	simple_image_bin	main/image/simple_image_bin.f90	121	private
get_nccs	subroutine	simple_image_bin	main/image/simple_image_bin.f90	128	private
grow_bins	subroutine	simple_image_bin	main/image/simple_image_bin.f90	825	private
inv_bimg	subroutine	simple_image_bin	main/image/simple_image_bin.f90	700	private
is_empty	function	simple_image_bin	main/image/simple_image_bin.f90	221	private
kill_bimg	subroutine	simple_image_bin	main/image/simple_image_bin.f90	1003	private
masscen_cc	subroutine	simple_image_bin	main/image/simple_image_bin.f90	525	private
max_dist	subroutine	simple_image_bin	main/image/simple_image_bin.f90	606	private
new_bimg	subroutine	simple_image_bin	main/image/simple_image_bin.f90	66	private
order_ccs	subroutine	simple_image_bin	main/image/simple_image_bin.f90	398	private
polish_ccs	subroutine	simple_image_bin	main/image/simple_image_bin.f90	427	private
read_bimg	subroutine	simple_image_bin	main/image/simple_image_bin.f90	154	private
set_edgecc2background	subroutine	simple_image_bin	main/image/simple_image_bin.f90	804	private
set_imat	subroutine	simple_image_bin	main/image/simple_image_bin.f90	107	private
set_largestcc2background	subroutine	simple_image_bin	main/image/simple_image_bin.f90	779	private
size_ccs	function	simple_image_bin	main/image/simple_image_bin.f90	277	private
transfer2bimg	subroutine	simple_image_bin	main/image/simple_image_bin.f90	93	private
update_img_rmat	subroutine	simple_image_bin	main/image/simple_image_bin.f90	136	private
update_mask_2d	subroutine	simple_image_bin	main/image/simple_image_bin.f90	964	private
update_mask_3d	subroutine	simple_image_bin	main/image/simple_image_bin.f90	978	private
write_bimg	subroutine	simple_image_bin	main/image/simple_image_bin.f90	145	private
automask2D	subroutine	simple_image_msk	main/image/simple_image_msk.f90	265	public
automask2D_binary_one	subroutine	simple_image_msk	main/image/simple_image_msk.f90	345	private
automask2D_support_pix	subroutine	simple_image_msk	main/image/simple_image_msk.f90	326	public
automask3D_1	subroutine	simple_image_msk	main/image/simple_image_msk.f90	37	private
automask3D_2	subroutine	simple_image_msk	main/image/simple_image_msk.f90	55	private
automask3D_binarize	subroutine	simple_image_msk	main/image/simple_image_msk.f90	131	private
automask3D_filter	subroutine	simple_image_msk	main/image/simple_image_msk.f90	103	private
automask3D_keep_largest_cc	subroutine	simple_image_msk	main/image/simple_image_msk.f90	146	private
binary_imat_to_pix	subroutine	simple_image_msk	main/image/simple_image_msk.f90	431	private
density_inoutside_mask	subroutine	simple_image_msk	main/image/simple_image_msk.f90	230	public
env_rproject	subroutine	simple_image_msk	main/image/simple_image_msk.f90	175	private
estimate_spher_mask_diam	subroutine	simple_image_msk	main/image/simple_image_msk.f90	78	private
close	subroutine	simple_imgfile	fileio/simple_imgfile.f90	170	private
getDim	function	simple_imgfile	fileio/simple_imgfile.f90	700	private
getDims	function	simple_imgfile	fileio/simple_imgfile.f90	693	private
open	subroutine	simple_imgfile	fileio/simple_imgfile.f90	66	private
open_local	subroutine	simple_imgfile	fileio/simple_imgfile.f90	139	private
rSlices	subroutine	simple_imgfile	fileio/simple_imgfile.f90	258	private
rTiffSlices	subroutine	simple_imgfile	fileio/simple_imgfile.f90	365	private
setDims	subroutine	simple_imgfile	fileio/simple_imgfile.f90	769	private
setIform	subroutine	simple_imgfile	fileio/simple_imgfile.f90	720	private
setMean	subroutine	simple_imgfile	fileio/simple_imgfile.f90	744	private
setMinMax	subroutine	simple_imgfile	fileio/simple_imgfile.f90	752	private
setMode	subroutine	simple_imgfile	fileio/simple_imgfile.f90	761	private
setPixSz	subroutine	simple_imgfile	fileio/simple_imgfile.f90	728	private
setRMSD	subroutine	simple_imgfile	fileio/simple_imgfile.f90	736	private
slice2bytepos	subroutine	simple_imgfile	fileio/simple_imgfile.f90	231	private
slice2recpos	subroutine	simple_imgfile	fileio/simple_imgfile.f90	195	private
update_MRC_stats	subroutine	simple_imgfile	fileio/simple_imgfile.f90	674	private
wSlices	subroutine	simple_imgfile	fileio/simple_imgfile.f90	500	private
wmrcSlices	subroutine	simple_imgfile	fileio/simple_imgfile.f90	629	private
CloseTiff	subroutine	simple_imghead	fileio/simple_imghead.f90	821	private
find_ldim_nptcls	subroutine	simple_imghead	fileio/simple_imghead.f90	1431	public
getDim	function	simple_imghead	fileio/simple_imghead.f90	1010	private
getDims	function	simple_imghead	fileio/simple_imghead.f90	995	private
getIform	function	simple_imghead	fileio/simple_imghead.f90	1171	private
getLabbyt	function	simple_imghead	fileio/simple_imghead.f90	1135	private
getLabrec	function	simple_imghead	fileio/simple_imghead.f90	1113	private
getLenbyt	function	simple_imghead	fileio/simple_imghead.f90	1124	private
getMaxim	function	simple_imghead	fileio/simple_imghead.f90	1146	private
getMode	function	simple_imghead	fileio/simple_imghead.f90	1182	private
get_eerfile_info	subroutine	simple_imghead	fileio/simple_imghead.f90	1405	private
get_mrcfile_info	subroutine	simple_imghead	fileio/simple_imghead.f90	1253	public
get_spifile_info	subroutine	simple_imghead	fileio/simple_imghead.f90	1307	private
get_tiffile_info	subroutine	simple_imghead	fileio/simple_imghead.f90	1380	private
is_even	function	simple_imghead	fileio/simple_imghead.f90	799	private
kill	subroutine	simple_imghead	fileio/simple_imghead.f90	1542	private
new	subroutine	simple_imghead	fileio/simple_imghead.f90	218	private
print_imghead	subroutine	simple_imghead	fileio/simple_imghead.f90	275	private
print_spihed	subroutine	simple_imghead	fileio/simple_imghead.f90	1367	private
read	subroutine	simple_imghead	fileio/simple_imghead.f90	347	private
read_spihed	subroutine	simple_imghead	fileio/simple_imghead.f90	1355	private
read_tiff	subroutine	simple_imghead	fileio/simple_imghead.f90	420	private
reset2default	subroutine	simple_imghead	fileio/simple_imghead.f90	628	private
setDim	subroutine	simple_imghead	fileio/simple_imghead.f90	1071	private
setDims	subroutine	simple_imghead	fileio/simple_imghead.f90	1048	private
setIform	subroutine	simple_imghead	fileio/simple_imghead.f90	1193	private
setMaxPixVal	subroutine	simple_imghead	fileio/simple_imghead.f90	936	private
setMaxim	subroutine	simple_imghead	fileio/simple_imghead.f90	1161	private
setMean	subroutine	simple_imghead	fileio/simple_imghead.f90	1233	private
setMinPixVal	subroutine	simple_imghead	fileio/simple_imghead.f90	921	private
setMinimal	subroutine	simple_imghead	fileio/simple_imghead.f90	728	private
setMode	subroutine	simple_imghead	fileio/simple_imghead.f90	1203	private
setPixSz	subroutine	simple_imghead	fileio/simple_imghead.f90	965	private
setRMSD	subroutine	simple_imghead	fileio/simple_imghead.f90	1213	private
test_imghead	subroutine	simple_imghead	fileio/simple_imghead.f90	1561	public
transfer_byte_array2obj	subroutine	simple_imghead	fileio/simple_imghead.f90	582	private
transfer_obj2byte_array	subroutine	simple_imghead	fileio/simple_imghead.f90	539	private
update_stack_nimgs	subroutine	simple_imghead	fileio/simple_imghead.f90	1513	public
write	subroutine	simple_imghead	fileio/simple_imghead.f90	460	private
make_pcavecs	subroutine	simple_imgproc	utils/simple_imgproc.f90	10	public
make_pcavol	subroutine	simple_imgproc	utils/simple_imgproc.f90	83	public
connect	subroutine	simple_ipc_tcp_socket_client	utils/comm/simple_ipc_tcp_socket_client.f90	99	private
kill	subroutine	simple_ipc_tcp_socket_client	utils/comm/simple_ipc_tcp_socket_client.f90	82	private
new	subroutine	simple_ipc_tcp_socket_client	utils/comm/simple_ipc_tcp_socket_client.f90	72	private
send_recv_msg	subroutine	simple_ipc_tcp_socket_client	utils/comm/simple_ipc_tcp_socket_client.f90	242	private
accept_connection	function	simple_ipc_tcp_socket_helpers	utils/comm/simple_ipc_tcp_socket_helpers.f90	139	public
c_poll	function	simple_ipc_tcp_socket_helpers	utils/comm/simple_ipc_tcp_socket_helpers.f90	49	private
c_recv	function	simple_ipc_tcp_socket_helpers	utils/comm/simple_ipc_tcp_socket_helpers.f90	57	private
poll_fds	subroutine	simple_ipc_tcp_socket_helpers	utils/comm/simple_ipc_tcp_socket_helpers.f90	114	public
find_server_ips	subroutine	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	232	private
get_server_ips	function	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	223	private
join_listener	subroutine	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	193	private
kill	subroutine	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	98	private
new	subroutine	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	88	private
recv_msg	subroutine	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	291	public
repl_msg	subroutine	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	316	public
start_listener	subroutine	simple_ipc_tcp_socket_server	utils/comm/simple_ipc_tcp_socket_server.f90	125	private
assert_port_in_range	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	202	private
destroy_listener_args	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	194	private
init_listener_args	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	183	private
listener_echo_ok_once	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	254	private
listener_ready_once	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	235	private
poke_server_port	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	209	private
run_all_ipc_tcp_socket_tests	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	38	public
test_client_send_recv_without_server_fails	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	165	private
test_client_server_roundtrip	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	142	private
test_helpers_accept_connection_invalid_fd	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	89	private
test_helpers_constants	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	60	private
test_helpers_fd_is_healthy_invalid_fd	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	82	private
test_helpers_poll_fds_bounds_and_zero	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	70	private
test_server_find_ips_and_port_range	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	96	private
test_server_new_kill_lifecycle	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	111	private
test_server_start_join_lifecycle	subroutine	simple_ipc_tcp_socket_tester	utils/comm/simple_ipc_tcp_socket_tester.f90	125	private
constructor	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	131	private
load_jpeg_i4	function	simple_jpg	extlibs/jpg/simple_jpg.f90	393	private
load_jpeg_r4	function	simple_jpg	extlibs/jpg/simple_jpg.f90	355	private
montage	function	simple_jpg	extlibs/jpg/simple_jpg.f90	201	private
read_jpeg	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	68	private
save_jpeg_i4	function	simple_jpg	extlibs/jpg/simple_jpg.f90	307	private
save_jpeg_r4	function	simple_jpg	extlibs/jpg/simple_jpg.f90	255	private
save_jpeg_r4_3D	function	simple_jpg	extlibs/jpg/simple_jpg.f90	233	private
setColorspace	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	183	private
setGamma	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	189	private
setHeight	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	171	private
setNormalised	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	195	private
setQuality	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	177	private
setWidth	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	165	private
setup_jpeg	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	59	private
test_jpg_export	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	428	public
write_jpeg	subroutine	simple_jpg	extlibs/jpg/simple_jpg.f90	79	private
build_kd_tree	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	51	private
build_node	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	70	private
grow_nodes	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	402	private
heap_consider	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	285	private
heap_sift_down	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	309	private
kill_kd_tree	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	450	private
kill_knn_table	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	43	private
query_all_kd_tree	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	208	private
query_kd_tree	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	182	private
query_node	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	247	private
reserve_nodes	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	394	private
select_kth	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	114	private
sort_neighbor_pairs	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	328	private
swap_int	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	466	private
swap_pair	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	361	private
validate_query	subroutine	simple_kd_tree	utils/structs/simple_kd_tree.f90	371	private
assign_labels	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	161	private
cluster	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	98	private
find_medoid	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	132	private
find_medoids	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	122	private
get_labels	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	57	private
get_medoids	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	63	private
init	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	70	private
kill	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	258	private
merge	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	183	private
merge_ranked	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	219	private
new_1	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	35	private
new_2	subroutine	simple_kmedoids	utils/clustering/simple_kmedoids.f90	48	private
center_columns	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1247	private
choose_nystrom_inds_from_data	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	960	private
compute_eigvecs	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	735	private
cosine_kernel	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	694	private
dense_mm	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1201	private
dense_tmm	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1178	private
generate_kpca	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	155	private
get_eigvals_kpca	function	simple_kpca_svd	main/pca/simple_kpca_svd.f90	144	private
get_feat_kpca	function	simple_kpca_svd	main/pca/simple_kpca_svd.f90	137	private
gram_symmetric	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1224	private
kernel_center	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	683	private
kill_kpca	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1334	private
master_kpca	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	165	private
master_nystrom	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	287	private
new_kpca	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	64	private
orthonormalize_cols	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1309	private
partial_eigh_sym	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1269	private
projected_kernel_col	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	937	private
rbf_kernel	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	713	private
select_local_support_inds	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	1064	private
select_nystrom_inds	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	948	private
set_params_kpca	subroutine	simple_kpca_svd	main/pca/simple_kpca_svd.f90	87	private
sparse_matvec_sp_proc	subroutine	simple_linalg	utils/math/simple_linalg.f90	18	private
advance	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	537	private
append	function	simple_linked_list	utils/structs/simple_linked_list.f90	326	private
assign	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	314	private
at	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	205	private
at_char	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	280	private
at_complex	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	250	private
at_int	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	220	private
at_logical	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	265	private
at_real	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	235	private
back	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	197	private
begin	function	simple_linked_list	utils/structs/simple_linked_list.f90	495	private
end	function	simple_linked_list	utils/structs/simple_linked_list.f90	501	private
end_iter	function	simple_linked_list	utils/structs/simple_linked_list.f90	507	private
front	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	189	private
getter	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	524	private
kill	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	171	private
kill_node	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	165	private
next	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	518	private
pop_front	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	140	private
push_back	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	92	private
push_back_char	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	132	private
push_back_complex	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	120	private
push_back_int	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	108	private
push_back_logical	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	126	private
push_back_real	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	114	private
push_front	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	80	private
replace_at	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	373	private
replace_iterator	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	419	private
replace_with	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	470	private
slice	subroutine	simple_linked_list	utils/structs/simple_linked_list.f90	350	private
run_all_list_tests	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	21	public
test_append	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	124	private
test_assign_and_copy_semantics	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	105	private
test_complex	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	279	private
test_derived_type_independence	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	372	private
test_derived_type_values	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	350	private
test_end_iterator_behavior	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	204	private
test_front_back_at	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	90	private
test_intrinsic_integer	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	232	private
test_iteration	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	156	private
test_iterator_index_and_advance	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	184	private
test_kill	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	219	private
test_logical	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	297	private
test_move_semantics	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	429	private
test_nested_allocations	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	401	private
test_pop_front	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	67	private
test_push_and_size	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	51	private
test_real	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	254	private
test_replace_iterator_stability	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	465	private
test_slice	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	140	private
test_string_values	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	326	private
test_type_safe_wrappers	subroutine	simple_linked_list_tester	utils/structs/simple_linked_list_tester.f90	453	private
apply_defaults_interface	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	91	private
apply_distr_entry_defaults	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	184	private
base_after_end	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	137	private
cavgassemble_hook	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	27	private
cavger_prepare_and_assemble	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	234	private
cleanup_interface	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	118	private
create_make_cavgs_strategy	function	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	149	public
endmsg_interface	function	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	125	private
exec_interface	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	104	private
finalize_interface	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	111	private
generate_cluster_centers	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	190	private
init_interface	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	97	private
master_apply_defaults	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	394	private
master_cleanup	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	444	private
master_end_message	function	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	453	private
master_execute	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	423	private
master_finalize_run	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	437	private
master_initialize	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	400	private
print_raw_source_verification	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	242	private
setup_evenodd	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	218	private
shmem_apply_defaults	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	278	private
shmem_bookkeeping	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	264	private
shmem_cleanup	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	322	private
shmem_end_message	function	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	330	private
shmem_execute	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	296	private
shmem_finalize_run	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	315	private
shmem_initialize	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	284	private
worker_apply_defaults	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	340	private
worker_cleanup	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	376	private
worker_end_message	function	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	384	private
worker_execute	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	353	private
worker_finalize_run	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	369	private
worker_initialize	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	346	private
write_oritype_segment_for_compute	subroutine	simple_make_cavgs_strategy	main/strategies/parallelization/simple_make_cavgs_strategy.f90	223	private
split_nobjs_even	function	simple_map_reduce	utils/simple_map_reduce.f90	15	public
split_pairs_in_parts	subroutine	simple_map_reduce	utils/simple_map_reduce.f90	48	public
calc_2Dref_offset	subroutine	simple_matcher_2Dprep	main/strategies/search/simple_matcher_2Dprep.f90	57	public
prep2Dref	subroutine	simple_matcher_2Dprep	main/strategies/search/simple_matcher_2Dprep.f90	88	public
prepimg4align	subroutine	simple_matcher_2Dprep	main/strategies/search/simple_matcher_2Dprep.f90	24	public
calc_3Drec	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	22	public
calc_projdir3Drec	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	103	public
cleanup_rec_buffers	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	371	public
group_pinds_by_state_eo	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	225	private
init_rec	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	391	public
init_state_half_rec	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	276	private
kill_state_half_rec	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	287	private
mark_empty_state	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	364	private
prep_imgs4rec	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	411	public
set_state_vol_output	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	337	private
update_state_half_rec	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	294	private
write_state_half_partial	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	316	private
write_state_partial	subroutine	simple_matcher_3Drec	main/strategies/search/simple_matcher_3Drec.f90	349	public
prep_pftc4align2D	subroutine	simple_matcher_pftc_prep	main/strategies/search/simple_matcher_pftc_prep.f90	19	public
alloc_ptcl_imgs	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	39	public
build_batch_particles2D	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	142	public
build_batch_particles3D	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	56	public
clean_batch_particles2D	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	172	public
clean_batch_particles3D	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	182	public
polarize_batch_particles3D	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	88	private
polarize_batch_particles3D_den	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	118	private
prep_sigmas_objfun	subroutine	simple_matcher_ptcl_batch	main/strategies/search/simple_matcher_ptcl_batch.f90	18	public
adopt_reprojection_model_range	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	85	public
blend_lowres_eo_for_registration	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	484	private
calcrefvolshift_and_mapshifts2ptcls	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	191	private
estimate_lp_from_refs	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	391	public
materialize_reprojection_model_from_volumes	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	122	public
pick_lp_est_state	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	366	public
read_mask_filter_refvols	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	230	private
read_mask_filter_reproject_refvols	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	422	public
read_reprojection_model	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	100	public
read_reprojection_model_file_header	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	165	private
read_reprojection_model_header	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	147	private
regularize_ref_with_noise	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	345	private
remove_ref_section_files	subroutine	simple_matcher_refvol_utils	main/strategies/search/simple_matcher_refvol_utils.f90	71	public
sample_ptcls4fillin	subroutine	simple_matcher_smpl_and_lplims	main/strategies/search/simple_matcher_smpl_and_lplims.f90	237	public
sample_ptcls4missing3D	subroutine	simple_matcher_smpl_and_lplims	main/strategies/search/simple_matcher_smpl_and_lplims.f90	247	public
sample_ptcls4update2D	subroutine	simple_matcher_smpl_and_lplims	main/strategies/search/simple_matcher_smpl_and_lplims.f90	256	public
sample_ptcls4update3D	subroutine	simple_matcher_smpl_and_lplims	main/strategies/search/simple_matcher_smpl_and_lplims.f90	200	public
set_bp_range2D	subroutine	simple_matcher_smpl_and_lplims	main/strategies/search/simple_matcher_smpl_and_lplims.f90	156	public
set_bp_range3D	subroutine	simple_matcher_smpl_and_lplims	main/strategies/search/simple_matcher_smpl_and_lplims.f90	17	public
estimate_mem_usage	subroutine	simple_mem_estimator	utils/simple_mem_estimator.f90	9	public
estimate_mem_usage_2D	function	simple_mem_estimator	utils/simple_mem_estimator.f90	60	public
estimate_mem_usage_ctf_estimation	function	simple_mem_estimator	utils/simple_mem_estimator.f90	124	public
estimate_mem_usage_extract	function	simple_mem_estimator	utils/simple_mem_estimator.f90	152	public
estimate_mem_usage_motion_corr	function	simple_mem_estimator	utils/simple_mem_estimator.f90	96	public
estimate_mem_usage_pick	function	simple_mem_estimator	utils/simple_mem_estimator.f90	138	public
estimate_mem_usage_preprocess	function	simple_mem_estimator	utils/simple_mem_estimator.f90	110	public
estimate_mem_usage_pspec	function	simple_mem_estimator	utils/simple_mem_estimator.f90	73	public
estimate_mem_usage_scale	function	simple_mem_estimator	utils/simple_mem_estimator.f90	85	public
forget_ft_maps	subroutine	simple_memoize_ft_maps	utils/simple_memoize_ft_maps.f90	58	public
ft_map_get_farray_shape	function	simple_memoize_ft_maps	utils/simple_memoize_ft_maps.f90	71	public
memoize_ft_maps	subroutine	simple_memoize_ft_maps	utils/simple_memoize_ft_maps.f90	24	public
log_sample	subroutine	simple_memory_monitor	utils/simple_memory_monitor.f90	121	private
mem_monitor_finish	subroutine	simple_memory_monitor	utils/simple_memory_monitor.f90	73	public
mem_monitor_init	subroutine	simple_memory_monitor	utils/simple_memory_monitor.f90	29	public
mem_report	subroutine	simple_memory_monitor	utils/simple_memory_monitor.f90	61	public
start_monitor	subroutine	simple_memory_monitor	utils/simple_memory_monitor.f90	87	private
binarize_mic_den	subroutine	simple_micproc	utils/simple_micproc.f90	182	public
bs_smoother	subroutine	simple_micproc	utils/simple_micproc.f90	166	public
bs_smoother_biomol	subroutine	simple_micproc	utils/simple_micproc.f90	159	public
cascade_filter	subroutine	simple_micproc	utils/simple_micproc.f90	134	public
cascade_filter_biomol	subroutine	simple_micproc	utils/simple_micproc.f90	126	public
cluster	subroutine	simple_micproc	utils/simple_micproc.f90	474	public
clustering_rejection	subroutine	simple_micproc	utils/simple_micproc.f90	235	public
flag_amorphous_carbon	subroutine	simple_micproc	utils/simple_micproc.f90	197	public
flag_ice	subroutine	simple_micproc	utils/simple_micproc.f90	543	public
read_mic	subroutine	simple_micproc	utils/simple_micproc.f90	114	public
read_mic_subtr_backgr	subroutine	simple_micproc	utils/simple_micproc.f90	83	public
read_mic_subtr_backgr_shrink	subroutine	simple_micproc	utils/simple_micproc.f90	27	public
sample_filetab	function	simple_micproc	utils/simple_micproc.f90	11	public
cure_outliers_1	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	606	private
cure_outliers_2	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	668	private
display	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	574	private
generate_micrographs	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	290	private
get_moviename	function	simple_micrograph_generator	main/simple_micrograph_generator.f90	786	private
kill	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	818	private
new	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	57	private
parse_movie_metadata	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	192	private
parse_string	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	810	private
write_star	subroutine	simple_micrograph_generator	main/simple_micrograph_generator.f90	451	private
ensure_real_capacity	subroutine	simple_mini_stream_utils	main/stream/simple_mini_stream_utils.f90	554	public
print_diam_stats	subroutine	simple_mini_stream_utils	main/stream/simple_mini_stream_utils.f90	573	public
segdiampick_mics	subroutine	simple_mini_stream_utils	main/stream/simple_mini_stream_utils.f90	78	public
segdiampick_mics_multi	subroutine	simple_mini_stream_utils	main/stream/simple_mini_stream_utils.f90	247	public
segdiampick_preprocess	subroutine	simple_mini_stream_utils	main/stream/simple_mini_stream_utils.f90	20	public
betagal_1jyx	function	simple_molecule_data	main/nano/simple_molecule_data.f90	23	public
sars_cov2_spkgp_6vxx	function	simple_molecule_data	main/nano/simple_molecule_data.f90	34244	public
align	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	245	private
align_corr	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	422	private
align_dcorr	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	333	private
align_discrete	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	299	private
calc_shifts	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	530	private
dealloc_ftexps	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	230	private
dealloc_images	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	202	private
fit_polynomial	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	768	private
gen_weights	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	580	private
get_coords	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	746	private
get_corrs	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	696	private
get_opt_shifts	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	702	private
get_shifts_toplot	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	708	private
get_weights	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	679	private
init_ftexps	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	216	private
init_images	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	154	private
kill	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	806	private
new	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	112	private
poly	function	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	798	private
polynomial2shift	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	783	private
recenter_shifts	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	628	private
refine	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	314	private
set_bfactor	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	758	private
set_coords	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	739	private
set_fitshifts	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	720	private
set_fixed_frame	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	714	private
set_maxits	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	732	private
set_rand_init_shifts	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	685	private
set_reslims	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	648	private
set_shsrch_tol	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	726	private
set_trs	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	664	private
set_weights	subroutine	simple_motion_align_hybrid	main/motion/simple_motion_align_hybrid.f90	670	private
align	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	124	private
align_dcorr	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	140	private
calc_shifts	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	196	private
dealloc_images	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	108	private
gen_weights	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	236	private
get_opt_shifts	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	323	private
get_reference	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	317	private
init_images	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	85	private
kill	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	343	private
new	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	58	private
set_bfactor	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	335	private
set_reslims	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	296	private
set_trs	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	311	private
shift_frames_gen_ref	subroutine	simple_motion_align_nano	main/motion/simple_motion_align_nano.f90	181	private
cure_outliers	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	722	private
motion_correct_calc_bid	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	399	public
motion_correct_calc_opt_weights	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	341	public
motion_correct_init	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	83	private
motion_correct_iso	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	268	public
motion_correct_iso_calc_sums	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	354	public
motion_correct_iso_kill	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	545	public
motion_correct_iso_shift_frames	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	329	public
motion_correct_kill_common	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	696	public
motion_correct_mic2spec	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	639	public
motion_correct_patched	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	554	public
motion_correct_patched_calc_sums	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	586	public
motion_correct_patched_kill	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	630	public
motion_correct_write2star	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	423	public
motion_correct_write_poly	subroutine	simple_motion_correct	main/motion/simple_motion_correct.f90	411	public
calc_npatches	subroutine	simple_motion_correct_iter	main/motion/simple_motion_correct_iter.f90	211	private
get_moviename	function	simple_motion_correct_iter	main/motion/simple_motion_correct_iter.f90	246	private
iterate	subroutine	simple_motion_correct_iter	main/motion/simple_motion_correct_iter.f90	36	private
cleanup_interface	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	86	private
create_motion_correct_strategy	function	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	106	public
distr_cleanup	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	298	private
distr_end_message	function	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	307	private
distr_execute	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	278	private
distr_finalize_run	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	291	private
distr_initialize	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	250	private
endmsg_interface	function	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	93	private
exec_interface	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	72	private
finalize_interface	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	79	private
init_interface	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	65	private
inmem_cleanup	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	233	private
inmem_end_message	function	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	240	private
inmem_execute	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	155	private
inmem_finalize_run	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	226	private
inmem_initialize	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	147	private
set_motion_correct_defaults	subroutine	simple_motion_correct_strategy	main/strategies/parallelization/simple_motion_correct_strategy.f90	126	private
calc_eer_fraction	subroutine	simple_motion_correct_utils	main/motion/simple_motion_correct_utils.f90	98	public
correct_gain	subroutine	simple_motion_correct_utils	main/motion/simple_motion_correct_utils.f90	15	public
flip_gain	subroutine	simple_motion_correct_utils	main/motion/simple_motion_correct_utils.f90	55	public
analyze_if_due	subroutine	simple_motion_gain_analysis	main/motion/simple_motion_gain_analysis.f90	96	private
analyzer_kill	subroutine	simple_motion_gain_analysis	main/motion/simple_motion_gain_analysis.f90	240	private
analyzer_new	subroutine	simple_motion_gain_analysis	main/motion/simple_motion_gain_analysis.f90	54	private
normalized_inverse_average_intensity	subroutine	simple_motion_gain_helpers	main/motion/simple_motion_gain_helpers.f90	69	public
read_movies_and_sum_frames	subroutine	simple_motion_gain_helpers	main/motion/simple_motion_gain_helpers.f90	13	public
create_constant_image	subroutine	simple_motion_gain_tester	main/motion/simple_motion_gain_tester.f90	136	private
create_gainref	subroutine	simple_motion_gain_tester	main/motion/simple_motion_gain_tester.f90	114	private
create_movie_stack	subroutine	simple_motion_gain_tester	main/motion/simple_motion_gain_tester.f90	92	private
run_all_motion_gain_tests	subroutine	simple_motion_gain_tester	main/motion/simple_motion_gain_tester.f90	16	public
test_gain_flip_analyzer_batch_updates	subroutine	simple_motion_gain_tester	main/motion/simple_motion_gain_tester.f90	53	private
test_read_movies_and_sum_frames_counts	subroutine	simple_motion_gain_tester	main/motion/simple_motion_gain_tester.f90	22	private
allocate_patches	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	108	private
apply_patch_poly	function	simple_motion_patched	main/motion/simple_motion_patched.f90	840	private
correct	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	144	private
deallocate_patches	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	124	private
det_shifts	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	206	private
det_shifts_refine	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	260	private
fit_polynomial	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	448	private
gen_micrograph	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	675	private
gen_patch	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	727	private
get_local_shift	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	662	private
get_poly4star	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	601	private
get_poly_coeffs	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	768	private
get_polyfit_rmsd	function	simple_motion_patched	main/motion/simple_motion_patched.f90	636	private
kill	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	803	private
new	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	87	private
patch_poly	function	simple_motion_patched	main/motion/simple_motion_patched.f90	822	private
pix2polycoords	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	642	private
plot_shifts	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	489	private
robust_fit_polynomial	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	347	private
set_bfactor	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	795	private
set_fitshifts	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	756	private
set_fixed_frame	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	777	private
set_frameweights	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	746	private
set_interp_fixed_frame	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	783	private
set_nframes	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	789	private
set_poly_coeffs	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	762	private
set_size_frames_ref	subroutine	simple_motion_patched	main/motion/simple_motion_patched.f90	684	private
build_tree_balanced	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	252	private
build_tree_from_subdistmat	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	216	private
deserialize_multi_dendro	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	425	public
get_full2sub_map	function	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	101	private
get_node	function	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	291	private
get_root_node	function	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	276	private
get_sub2full_map	function	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	116	private
get_tree_refs	function	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	178	private
get_tree_refs_static	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	156	private
kill	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	315	private
new	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	42	private
new_multi_balanced	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	65	private
serialize_multi_dendro	subroutine	simple_multi_dendro	utils/structs/simple_multi_dendro.f90	333	public
assert_int_in_set	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	73	private
build_tree_from_full_dist	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	80	private
make_distmat_two_pairs	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	56	private
make_distmat_two_triples	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	31	private
run_all_multi_dendro_tests	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	13	public
test_build_tree_balanced_two_triples	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	292	private
test_build_tree_pairs_basic_structure	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	222	private
test_build_tree_singletons	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	191	private
test_build_tree_two_triples_basic_structure	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	266	private
test_get_tree_refs	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	140	private
test_initial_state	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	112	private
test_kill_and_reuse	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	321	private
test_new_counts_and_getters	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	124	private
test_new_multi_balanced_single_tree	subroutine	simple_multi_dendro_tester	utils/structs/simple_multi_dendro_tester.f90	168	private
atominfo2centers	function	simple_nanoparticle	main/nano/simple_nanoparticle.f90	442	private
atominfo2centers_A	function	simple_nanoparticle	main/nano/simple_nanoparticle.f90	469	private
binarize_and_find_centers	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	626	private
calc_anisotropic_disp	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1576	private
calc_cn_stats	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1312	private
calc_isotropic_disp	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1493	private
calc_longest_atm_dist	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1426	private
calc_zscore	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1307	private
center_on_atom	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	498	private
check_neighbors_cn	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1458	private
conv_denoise	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	535	private
discard_atoms	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1017	private
discard_small_ccs	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	803	private
fillin_atominfo	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1160	private
find_centers	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	757	private
get_img	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	307	private
get_img_raw	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	313	private
get_ldim	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	286	private
get_natoms	function	simple_nanoparticle	main/nano/simple_nanoparticle.f90	292	private
get_valid_corrs	function	simple_nanoparticle	main/nano/simple_nanoparticle.f90	299	private
identify_atomic_pos	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	574	private
identify_lattice_params	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	542	private
kill	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	2161	private
masscen	function	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1415	private
new	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	248	private
pack_instance4stats	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	391	private
remove_lowly_contacted	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1098	private
remove_small_and_lowly_contacted	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1123	private
set_atm_info	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1813	private
set_atom	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1769	private
set_atomic_coords_from_pdb	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	367	private
set_atomic_coords_from_xyz	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	348	private
set_coords4stats	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	384	private
set_img	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	326	private
set_ncc	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	319	private
simulate_atoms	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1725	private
split_atom	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	897	private
split_atoms	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	821	private
update_ncc	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	523	private
validate_atoms	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	985	private
write_2D_slice	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1381	private
write_atominfo	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1931	private
write_centers_1	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1787	private
write_centers_2	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1823	private
write_centers_aniso	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1855	private
write_cn_atoms	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1348	private
write_cn_stats	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	2074	private
write_csv_files	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1893	private
write_individual_atoms	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1872	private
write_np_stats	subroutine	simple_nanoparticle	main/nano/simple_nanoparticle.f90	1984	private
Kabsch_algo	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	134	public
atm_rmsd_stats	function	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1294	public
atoms_register	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	29	public
calc_contact_scores	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	461	public
dists_btw_common	function	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1277	public
find_atoms_subset	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1322	public
find_couples	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1162	public
find_rMax	function	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	243	public
fit_lattice	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	271	public
gaussian_kernel	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1070	private
nnbdl_lat	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	398	private
phasecorr_one_atom	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	186	public
qr	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	443	private
read_pdb2matrix	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1082	public
remove_atoms	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1249	public
run_cn_analysis	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	486	public
strain_analysis	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	551	public
thres_detect_conv_atom_denoised	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	216	public
write_ideal_lattice_pdb	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1131	private
write_matrix2pdb	subroutine	simple_nanoparticle_utils	main/nano/simple_nanoparticle_utils.f90	1099	public
add_headline_cls2D	subroutine	simple_nice	utils/gui/simple_nice.f90	893	public
add_headline_micrographs	subroutine	simple_nice	utils/gui/simple_nice.f90	508	public
add_histograms_cls2D	subroutine	simple_nice	utils/gui/simple_nice.f90	708	public
add_histograms_micrographs	subroutine	simple_nice	utils/gui/simple_nice.f90	639	public
add_plot_optics	subroutine	simple_nice	utils/gui/simple_nice.f90	767	public
add_view_cls2D	subroutine	simple_nice	utils/gui/simple_nice.f90	928	public
add_view_ini3D	subroutine	simple_nice	utils/gui/simple_nice.f90	1061	public
add_view_micrographs	subroutine	simple_nice	utils/gui/simple_nice.f90	550	public
add_view_optics	subroutine	simple_nice	utils/gui/simple_nice.f90	734	public
add_view_pick	subroutine	simple_nice	utils/gui/simple_nice.f90	792	public
add_view_vols	subroutine	simple_nice	utils/gui/simple_nice.f90	1108	public
bar_plot_object	subroutine	simple_nice	utils/gui/simple_nice.f90	1627	public
calculate_checksum	function	simple_nice	utils/gui/simple_nice.f90	1657	public
create_interactive_plot	subroutine	simple_nice	utils/gui/simple_nice.f90	757	public
cycle	subroutine	simple_nice	utils/gui/simple_nice.f90	303	public
datestr	function	simple_nice	utils/gui/simple_nice.f90	1667	public
doughnut_plot_object	subroutine	simple_nice	utils/gui/simple_nice.f90	1597	public
fsc_object	subroutine	simple_nice	utils/gui/simple_nice.f90	1131	public
generate_stat_json	subroutine	simple_nice	utils/gui/simple_nice.f90	477	public
get_real_keys_json	subroutine	simple_nice	utils/gui/simple_nice.f90	1714	public
get_stat_json	subroutine	simple_nice	utils/gui/simple_nice.f90	1730	public
image_thumbnail_object	subroutine	simple_nice	utils/gui/simple_nice.f90	1552	public
init_1	subroutine	simple_nice	utils/gui/simple_nice.f90	217	public
init_2	subroutine	simple_nice	utils/gui/simple_nice.f90	268	public
remote_heartbeat	subroutine	simple_nice	utils/gui/simple_nice.f90	400	public
start_comm_thread	subroutine	simple_nice	utils/gui/simple_nice.f90	368	public
terminate	subroutine	simple_nice	utils/gui/simple_nice.f90	275	public
terminate_comm_thread	subroutine	simple_nice	utils/gui/simple_nice.f90	389	public
text_data_object_1	subroutine	simple_nice	utils/gui/simple_nice.f90	1520	public
text_data_object_2	subroutine	simple_nice	utils/gui/simple_nice.f90	1530	public
text_data_object_3	subroutine	simple_nice	utils/gui/simple_nice.f90	1542	public
update_cls2D	subroutine	simple_nice	utils/gui/simple_nice.f90	1346	public
update_from_project	subroutine	simple_nice	utils/gui/simple_nice.f90	1681	public
update_ini3D	subroutine	simple_nice	utils/gui/simple_nice.f90	1490	public
update_micrographs	subroutine	simple_nice	utils/gui/simple_nice.f90	1190	public
update_optics	subroutine	simple_nice	utils/gui/simple_nice.f90	1252	public
update_pick	subroutine	simple_nice	utils/gui/simple_nice.f90	1264	public
update_vols	subroutine	simple_nice	utils/gui/simple_nice.f90	1513	public
kill	subroutine	simple_nrtxtfile	fileio/simple_nrtxtfile.f90	203	private
new	subroutine	simple_nrtxtfile	fileio/simple_nrtxtfile.f90	39	private
readNextDataLine	subroutine	simple_nrtxtfile	fileio/simple_nrtxtfile.f90	102	private
writeCommentLine	subroutine	simple_nrtxtfile	fileio/simple_nrtxtfile.f90	178	private
writeDataLineInt	subroutine	simple_nrtxtfile	fileio/simple_nrtxtfile.f90	153	private
writeDataLineReal	subroutine	simple_nrtxtfile	fileio/simple_nrtxtfile.f90	131	private
add_1	subroutine	simple_online_var	utils/math/simple_online_var.f90	28	private
add_2	subroutine	simple_online_var	utils/math/simple_online_var.f90	40	private
get_mean	function	simple_online_var	utils/math/simple_online_var.f90	83	private
get_var	function	simple_online_var	utils/math/simple_online_var.f90	90	private
reset_mean	subroutine	simple_online_var	utils/math/simple_online_var.f90	56	private
serialize	function	simple_online_var	utils/math/simple_online_var.f90	63	private
test_online_var	subroutine	simple_online_var	utils/math/simple_online_var.f90	103	public
unserialize	subroutine	simple_online_var	utils/math/simple_online_var.f90	73	private
bfgs_minimize	subroutine	simple_opt_bfgs	main/opt/simple_opt_bfgs.f90	41	private
bfgsmin	subroutine	simple_opt_bfgs	main/opt/simple_opt_bfgs.f90	77	private
kill_opt_bfgs	subroutine	simple_opt_bfgs	main/opt/simple_opt_bfgs.f90	172	private
new_opt_bfgs	subroutine	simple_opt_bfgs	main/opt/simple_opt_bfgs.f90	24	private
bfgs2_iterate	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	150	private
bfgs2_minimize	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	56	private
bfgs2_set	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	111	private
bfgs2min	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	78	private
change_direction	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	560	private
check_extremum	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	440	private
cubic	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	426	private
interp_cubic	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	453	private
interp_quad	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	482	private
interpolate	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	405	private
kill_opt_bfgs2	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	579	private
linear_minimize	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	216	private
moveto	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	394	private
new_opt_bfgs2	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	43	private
prepare_wrapper	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	134	private
slope	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	145	private
solve_quadratic	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	509	private
update_position	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	383	private
wrap_df	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	340	private
wrap_f	function	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	327	private
wrap_fdf	subroutine	simple_opt_bfgs2	main/opt/simple_opt_bfgs2.f90	357	private
bforce_minimize	subroutine	simple_opt_bforce	main/opt/simple_opt_bforce.f90	42	private
kill_opt_bforce	subroutine	simple_opt_bforce	main/opt/simple_opt_bforce.f90	104	private
new_opt_bforce	subroutine	simple_opt_bforce	main/opt/simple_opt_bforce.f90	26	private
srch_not_done	function	simple_opt_bforce	main/opt/simple_opt_bforce.f90	79	private
de_minimize	subroutine	simple_opt_de	main/opt/simple_opt_de.f90	71	private
kill_de	subroutine	simple_opt_de	main/opt/simple_opt_de.f90	148	private
new_de	subroutine	simple_opt_de	main/opt/simple_opt_de.f90	36	private
new	subroutine	simple_opt_factory	main/opt/simple_opt_factory.f90	29	private
fr_cg_iterate	function	simple_opt_fr_cg	main/opt/simple_opt_fr_cg.f90	105	private
fr_cg_minimize	subroutine	simple_opt_fr_cg	main/opt/simple_opt_fr_cg.f90	38	private
fr_cg_set	subroutine	simple_opt_fr_cg	main/opt/simple_opt_fr_cg.f90	92	private
fr_cgmin	subroutine	simple_opt_fr_cg	main/opt/simple_opt_fr_cg.f90	59	private
kill_opt_fr_cg	subroutine	simple_opt_fr_cg	main/opt/simple_opt_fr_cg.f90	167	private
new_opt_fr_cg	subroutine	simple_opt_fr_cg	main/opt/simple_opt_fr_cg.f90	28	private
intermediate_point	subroutine	simple_opt_helpers	main/opt/simple_opt_helpers.f90	17	public
minimize	subroutine	simple_opt_helpers	main/opt/simple_opt_helpers.f90	47	public
take_step	subroutine	simple_opt_helpers	main/opt/simple_opt_helpers.f90	11	public
test_gradient	function	simple_opt_helpers	main/opt/simple_opt_helpers.f90	143	public
calc_Dmat	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	72	private
calc_opt_weights	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	141	private
create_ftexp_objs	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	100	private
dealloc_ftexp_objs	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	128	private
get_weights	function	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	205	private
kill	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	223	private
new	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	51	private
opt_image_weights_cost_Dmat	function	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	288	private
opt_image_weights_cost_Ref	function	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	375	private
opt_image_weights_cost_sp_wrapper	function	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	249	private
opt_image_weights_cost_wrapper	function	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	232	private
opt_image_weights_fdf_Dmat	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	320	private
opt_image_weights_fdf_Ref	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	418	private
opt_image_weights_fdf_wrapper	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	481	private
opt_image_weights_gcost	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	262	private
opt_image_weights_gcost_Dmat	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	312	private
opt_image_weights_gcost_Ref	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	410	private
opt_image_weights_gcost_wrapper	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	270	private
set_Nrestarts	subroutine	simple_opt_image_weights	main/motion/simple_opt_image_weights.f90	217	private
active	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	946	private
bmv	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	1019	private
cauchy	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	1120	private
cmprlb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	1520	private
daxpy	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	13	private
dcopy	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	21	private
dcsrch	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	2684	private
dcstep	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	2966	private
ddot	function	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	28	private
dpofa	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	3194	private
dscal	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	35	private
dtrsl	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	3265	private
errclb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	1579	private
formk	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	1625	private
formt	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	1925	private
freev	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	1978	private
hpsolb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	2057	private
kill_opt_lbfgsb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	3394	private
lbfgsb_minimize	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	85	private
lbfgsbmin	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	130	private
lnsrlb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	2153	private
mainlb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	411	private
matupd	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	2264	private
new_opt_lbfgsb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	69	private
projgr	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	2332	private
setulb	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	199	private
subsm	subroutine	simple_opt_lbfgsb	main/opt/simple_opt_lbfgsb.f90	2370	private
estimate_spher_mask	subroutine	simple_opt_mask	utils/simple_opt_mask.f90	13	public
init	subroutine	simple_opt_particle_swarm	main/opt/simple_opt_particle_swarm.f90	74	private
kill_particle_swarm	subroutine	simple_opt_particle_swarm	main/opt/simple_opt_particle_swarm.f90	148	private
new_particle_swarm	subroutine	simple_opt_particle_swarm	main/opt/simple_opt_particle_swarm.f90	30	private
particle_swarm_minimize	subroutine	simple_opt_particle_swarm	main/opt/simple_opt_particle_swarm.f90	41	private
update_particle	subroutine	simple_opt_particle_swarm	main/opt/simple_opt_particle_swarm.f90	106	private
kill_opt_powell	subroutine	simple_opt_powell	main/opt/simple_opt_powell.f90	179	private
new_opt_powell	subroutine	simple_opt_powell	main/opt/simple_opt_powell.f90	27	private
powell	subroutine	simple_opt_powell	main/opt/simple_opt_powell.f90	115	private
powell_minimize	subroutine	simple_opt_powell	main/opt/simple_opt_powell.f90	42	private
kill_opt_pr_cg	subroutine	simple_opt_pr_cg	main/opt/simple_opt_pr_cg.f90	170	private
new_opt_pr_cg	subroutine	simple_opt_pr_cg	main/opt/simple_opt_pr_cg.f90	27	private
pr_cg_iterate	function	simple_opt_pr_cg	main/opt/simple_opt_pr_cg.f90	106	private
pr_cg_minimize	subroutine	simple_opt_pr_cg	main/opt/simple_opt_pr_cg.f90	37	private
pr_cg_set	subroutine	simple_opt_pr_cg	main/opt/simple_opt_pr_cg.f90	93	private
pr_cgmin	subroutine	simple_opt_pr_cg	main/opt/simple_opt_pr_cg.f90	60	private
init	subroutine	simple_opt_simplex	main/opt/simple_opt_simplex.f90	104	private
kill_opt_simplex	subroutine	simple_opt_simplex	main/opt/simple_opt_simplex.f90	125	private
new_opt_simplex	subroutine	simple_opt_simplex	main/opt/simple_opt_simplex.f90	28	private
simplex_minimize	subroutine	simple_opt_simplex	main/opt/simple_opt_simplex.f90	40	private
change_opt	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	269	private
costfun	function	simple_opt_spec	main/opt/simple_opt_spec.f90	84	public
costfun_8	function	simple_opt_spec	main/opt/simple_opt_spec.f90	114	private
eval_df_4	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	337	private
eval_df_8	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	390	private
eval_f_4	function	simple_opt_spec	main/opt/simple_opt_spec.f90	323	private
eval_f_8	function	simple_opt_spec	main/opt/simple_opt_spec.f90	371	private
eval_fdf_4	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	351	private
eval_fdf_8	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	410	private
fdfcostfun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	104	private
fdfcostfun_8	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	134	private
fun	function	simple_opt_spec	main/opt/simple_opt_spec.f90	448	private
fun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	463	private
fun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	478	private
fun	function	simple_opt_spec	main/opt/simple_opt_spec.f90	494	private
fun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	509	private
fun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	524	private
gcostfun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	94	private
gcostfun_8	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	124	private
kill	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	535	private
opt_callback	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	144	private
set_costfun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	444	private
set_costfun_8	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	490	private
set_fdfcostfun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	474	private
set_fdfcostfun_8	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	520	private
set_gcostfun	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	459	private
set_gcostfun_8	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	505	private
set_inipop	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	312	private
set_limits	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	276	private
set_limits_init	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	294	private
specify	subroutine	simple_opt_spec	main/opt/simple_opt_spec.f90	152	private
kill_opt_stde	subroutine	simple_opt_stde	main/opt/simple_opt_stde.f90	137	private
new_opt_stde	subroutine	simple_opt_stde	main/opt/simple_opt_stde.f90	27	private
stde_iterate	function	simple_opt_stde	main/opt/simple_opt_stde.f90	95	private
stde_minimize	subroutine	simple_opt_stde	main/opt/simple_opt_stde.f90	37	private
stde_set	subroutine	simple_opt_stde	main/opt/simple_opt_stde.f90	90	private
stdemin	subroutine	simple_opt_stde	main/opt/simple_opt_stde.f90	59	private
amoeba	subroutine	simple_opt_subs	main/opt/simple_opt_subs.f90	308	public
amoeba_private	subroutine	simple_opt_subs	main/opt/simple_opt_subs.f90	327	private
amotry	function	simple_opt_subs	main/opt/simple_opt_subs.f90	394	private
brent	function	simple_opt_subs	main/opt/simple_opt_subs.f90	140	private
check_and_correct_vec	subroutine	simple_opt_subs	main/opt/simple_opt_subs.f90	441	public
eval_move	function	simple_opt_subs	main/opt/simple_opt_subs.f90	48	private
linmin	subroutine	simple_opt_subs	main/opt/simple_opt_subs.f90	23	public
lnsrch	subroutine	simple_opt_subs	main/opt/simple_opt_subs.f90	224	public
mnbrak	subroutine	simple_opt_subs	main/opt/simple_opt_subs.f90	69	private
shc_selector	function	simple_opt_subs	main/opt/simple_opt_subs.f90	415	public
generic_kill	subroutine	simple_optimizer	main/opt/simple_optimizer.f90	41	private
generic_minimize	subroutine	simple_optimizer	main/opt/simple_optimizer.f90	31	private
generic_new	subroutine	simple_optimizer	main/opt/simple_optimizer.f90	20	private
run_all_ori_tests	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	17	public
test_2Dshift_set_get_and_rounding	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	119	private
test_copy_nonptcl_to_ptcl	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	272	private
test_copy_ptcl_to_nonptcl	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	247	private
test_copy_ptcl_to_ptcl	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	197	private
test_ctor_and_flags	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	45	private
test_delete_2Dclustering	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	304	private
test_delete_3Dalignment	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	329	private
test_euler_basic_set_get	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	63	private
test_euler_compose_vs_compeuler	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	499	private
test_euler_matrix_roundtrip	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	84	private
test_geodesic_metrics	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	476	private
test_get_dfx_dfy_and_setters	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	163	private
test_isthere_and_ischar	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	175	private
test_mirror2d_involution	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	442	private
test_mirror3d_involution	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	425	private
test_normal_and_mat_consistency	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	101	private
test_ori2str_and_str2ori_roundtrip	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	521	private
test_state_class_proj_eo_sampled_updatecnt	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	143	private
test_transfer_2Dparams	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	356	private
test_transfer_3Dparams	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	394	private
test_transp_involution	subroutine	simple_ori_tester	main/ori/simple_ori_tester.f90	459	private
dm2euler	function	simple_ori_utils	main/ori/simple_ori_utils.f90	72	public
drotmat	function	simple_ori_utils	main/ori/simple_ori_utils.f90	156	private
euler2dm	subroutine	simple_ori_utils	main/ori/simple_ori_utils.f90	30	private
euler2m	function	simple_ori_utils	main/ori/simple_ori_utils.f90	18	public
euler_compose	subroutine	simple_ori_utils	main/ori/simple_ori_utils.f90	260	public
euler_mirror	subroutine	simple_ori_utils	main/ori/simple_ori_utils.f90	273	public
euler_normal	function	simple_ori_utils	main/ori/simple_ori_utils.f90	240	private
m2euler	function	simple_ori_utils	main/ori/simple_ori_utils.f90	49	public
make_transfmat	function	simple_ori_utils	main/ori/simple_ori_utils.f90	94	public
rnd_romat	subroutine	simple_ori_utils	main/ori/simple_ori_utils.f90	199	public
rotmat	function	simple_ori_utils	main/ori/simple_ori_utils.f90	112	private
run_all_oris_tests	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	11	public
test_compress_and_masks	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	146	private
test_constructors_and_basic_props	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	29	private
test_extract_and_copy	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	105	private
test_getters_setters	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	58	private
test_misc_flags	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	454	private
test_proj_space_and_remap	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	364	private
test_randomization_and_symmetry	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	338	private
test_rotations_and_errors	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	432	private
test_sample4update_cnt_large	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	283	private
test_sampling_and_updatecnt	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	183	private
test_stats_and_ordering	subroutine	simple_oris_tester	main/ori/simple_oris_tester.f90	395	private
add_char_fixed	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	99	private
add_char_string	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	109	private
add_dir	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	166	private
add_file	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	139	private
add_int	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	119	private
add_real	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	129	private
apply_cmdline	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	278	private
clear	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	83	private
ensure_char_capacity	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	176	private
ensure_dir_capacity	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	261	private
ensure_file_capacity	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	244	private
ensure_int_capacity	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	210	private
ensure_real_capacity	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	227	private
ensure_string_capacity	subroutine	simple_parameters_registry	main/params/simple_parameters_registry.f90	193	private
cure_outliers	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	473	private
display	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	302	private
extract_particles	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	336	private
extract_particles_from_mic	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	375	private
extract_ptcl	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	418	private
get_local_shift	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	599	private
init_mask	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	198	private
init_mic	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	188	private
init_mov	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	63	private
kill	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	647	private
parse_movie_metadata	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	208	private
parse_string	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	639	private
pix2polycoords	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	591	private
post_process	subroutine	simple_particle_extractor	main/simple_particle_extractor.f90	464	private
generic_generate	subroutine	simple_pca	main/pca/simple_pca.f90	35	private
generic_get_feat	function	simple_pca	main/pca/simple_pca.f90	28	private
generic_kill	subroutine	simple_pca	main/pca/simple_pca.f90	50	private
generic_master	subroutine	simple_pca	main/pca/simple_pca.f90	43	private
generic_new	subroutine	simple_pca	main/pca/simple_pca.f90	22	private
generate_svd	subroutine	simple_pca_svd	main/pca/simple_pca_svd.f90	73	private
get_feat_svd	function	simple_pca_svd	main/pca/simple_pca_svd.f90	65	private
kill_svd	subroutine	simple_pca_svd	main/pca/simple_pca_svd.f90	154	private
master_T	subroutine	simple_pca_svd	main/pca/simple_pca_svd.f90	119	private
master_ori	subroutine	simple_pca_svd	main/pca/simple_pca_svd.f90	94	private
master_svd	subroutine	simple_pca_svd	main/pca/simple_pca_svd.f90	83	private
new_svd	subroutine	simple_pca_svd	main/pca/simple_pca_svd.f90	35	private
kill_qsys_persistent_worker_message_base	subroutine	simple_persistent_worker_message_base	utils/persistent_worker/message/simple_persistent_worker_message_base.f90	61	private
new_qsys_persistent_worker_message_base	subroutine	simple_persistent_worker_message_base	utils/persistent_worker/message/simple_persistent_worker_message_base.f90	54	private
serialise	subroutine	simple_persistent_worker_message_base	utils/persistent_worker/message/simple_persistent_worker_message_base.f90	72	private
kill_qsys_persistent_worker_message_heartbeat	subroutine	simple_persistent_worker_message_heartbeat	utils/persistent_worker/message/simple_persistent_worker_message_heartbeat.f90	77	private
new_qsys_persistent_worker_message_heartbeat	subroutine	simple_persistent_worker_message_heartbeat	utils/persistent_worker/message/simple_persistent_worker_message_heartbeat.f90	69	private
serialise_qsys_persistent_worker_message_heartbeat	subroutine	simple_persistent_worker_message_heartbeat	utils/persistent_worker/message/simple_persistent_worker_message_heartbeat.f90	92	private
kill_qsys_persistent_worker_message_status	subroutine	simple_persistent_worker_message_status	utils/persistent_worker/message/simple_persistent_worker_message_status.f90	68	private
new_qsys_persistent_worker_message_status	subroutine	simple_persistent_worker_message_status	utils/persistent_worker/message/simple_persistent_worker_message_status.f90	60	private
serialise_qsys_persistent_worker_message_status	subroutine	simple_persistent_worker_message_status	utils/persistent_worker/message/simple_persistent_worker_message_status.f90	79	private
kill_qsys_persistent_worker_message_task	subroutine	simple_persistent_worker_message_task	utils/persistent_worker/message/simple_persistent_worker_message_task.f90	90	private
new_qsys_persistent_worker_message_task	subroutine	simple_persistent_worker_message_task	utils/persistent_worker/message/simple_persistent_worker_message_task.f90	82	private
serialise_qsys_persistent_worker_message_task	subroutine	simple_persistent_worker_message_task	utils/persistent_worker/message/simple_persistent_worker_message_task.f90	108	private
kill_qsys_persistent_worker_message_terminate	subroutine	simple_persistent_worker_message_terminate	utils/persistent_worker/message/simple_persistent_worker_message_terminate.f90	68	private
new_qsys_persistent_worker_message_terminate	subroutine	simple_persistent_worker_message_terminate	utils/persistent_worker/message/simple_persistent_worker_message_terminate.f90	60	private
serialise_qsys_persistent_worker_message_terminate	subroutine	simple_persistent_worker_message_terminate	utils/persistent_worker/message/simple_persistent_worker_message_terminate.f90	79	private
run_all_persistent_worker_message_tests	subroutine	simple_persistent_worker_message_tester	utils/persistent_worker/message/simple_persistent_worker_message_tester.f90	36	public
test_base_message_new_kill_and_serialise	subroutine	simple_persistent_worker_message_tester	utils/persistent_worker/message/simple_persistent_worker_message_tester.f90	56	private
test_heartbeat_new_kill_and_serialise	subroutine	simple_persistent_worker_message_tester	utils/persistent_worker/message/simple_persistent_worker_message_tester.f90	74	private
test_message_type_enum_values	subroutine	simple_persistent_worker_message_tester	utils/persistent_worker/message/simple_persistent_worker_message_tester.f90	47	private
test_status_new_kill_and_serialise	subroutine	simple_persistent_worker_message_tester	utils/persistent_worker/message/simple_persistent_worker_message_tester.f90	168	private
test_task_new_kill_and_serialise	subroutine	simple_persistent_worker_message_tester	utils/persistent_worker/message/simple_persistent_worker_message_tester.f90	115	private
test_terminate_new_kill_and_serialise	subroutine	simple_persistent_worker_message_tester	utils/persistent_worker/message/simple_persistent_worker_message_tester.f90	193	private
claim_warmup_worker_ids	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	353	private
clear_registry_entry_by_fd	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	844	private
clear_stale_registry_entry	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	832	private
get_host_ips	function	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	304	private
get_port	function	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	297	private
get_queue_pressure_workers_required	function	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	313	private
handle_heartbeat_msg	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	924	private
handle_new_task_msg	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	742	private
handle_terminate_msg	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	818	private
handle_unknown_msg	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	724	private
is_running	function	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	412	private
kill	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	219	private
mark_worker_slots_launch_pending	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	389	private
new	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	130	private
pack_task_queue	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	630	private
queue_task	function	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	260	private
send_idle_reply	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	707	private
set_warmup_cooldown_enabled	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	330	private
set_warmup_request	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	881	private
signal_ready	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	697	private
update_queue_pressure	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	650	private
update_worker_registry	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	903	private
worker_listener_thread	subroutine	simple_persistent_worker_server	utils/persistent_worker/simple_persistent_worker_server.f90	431	private
build_test_task	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	263	private
run_all_persistent_worker_server_tests	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	34	public
test_claim_warmup_marks_launch_pending_and_clears_requests	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	172	private
test_get_host_ips_default_empty	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	80	private
test_mark_worker_slots_launch_pending_sets_flags	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	157	private
test_module_defaults_and_constants	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	58	private
test_new_and_kill_lifecycle	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	103	private
test_new_client_only_invalid_address_rejected	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	133	private
test_new_client_only_valid_address_parse	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	124	private
test_new_invalid_args_do_not_start	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	86	private
test_new_is_idempotent_while_running	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	142	private
test_queue_task_eventually_rejects_when_full	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	235	private
test_queue_task_priority_requests	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	213	private
test_server_default_state	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	68	private
test_startup_pending_prevents_duplicate_warmup_claim	subroutine	simple_persistent_worker_server_tester	utils/persistent_worker/simple_persistent_worker_server_tester.f90	191	private
bounded_shift_trial	function	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	439	public
coarse_search	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	449	private
coarse_search_opt_angle	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	473	private
grad_shsrch_costfun	function	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	113	private
grad_shsrch_fdfcostfun	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	144	private
grad_shsrch_gcostfun	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	127	private
grad_shsrch_get_profile	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	510	private
grad_shsrch_kill	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	517	private
grad_shsrch_minimize	function	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	191	private
grad_shsrch_minimize_direct	function	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	300	private
grad_shsrch_new	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	52	private
grad_shsrch_optimize_angle	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	165	private
grad_shsrch_optimize_angle_wrapper	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	172	private
grad_shsrch_reset_profile	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	504	private
grad_shsrch_set_indices	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	183	private
set_limits	subroutine	simple_pftc_shsrch_grad	main/pftc/simple_pftc_shsrch_grad.f90	107	private
cleanup_interface	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	86	private
create_pick_strategy	function	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	105	public
distr_cleanup	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	559	private
distr_end_message	function	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	568	private
distr_execute	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	526	private
distr_finalize_run	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	552	private
distr_initialize	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	493	private
endmsg_interface	function	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	93	private
exec_interface	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	72	private
finalize_interface	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	79	private
init_interface	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	65	private
inmem_cleanup	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	476	private
inmem_end_message	function	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	483	private
inmem_execute	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	414	private
inmem_finalize_run	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	469	private
inmem_initialize	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	406	private
make_pickrefs_impl	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	178	public
set_pick_defaults	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	124	private
validate_pick_mode	subroutine	simple_pick_strategy	main/strategies/parallelization/simple_pick_strategy.f90	145	private
iterate	subroutine	simple_picker_iter	main/pick/simple_picker_iter.f90	26	private
kill	subroutine	simple_picker_iter	main/pick/simple_picker_iter.f90	92	private
read_pickrefs	subroutine	simple_picker_iter	main/pick/simple_picker_iter.f90	71	private
exec_gaupick	subroutine	simple_picker_utils	main/pick/simple_picker_utils.f90	119	public
exec_refpick	subroutine	simple_picker_utils	main/pick/simple_picker_utils.f90	23	public
exec_segdiampick	subroutine	simple_picker_utils	main/pick/simple_picker_utils.f90	98	public
exec_segpick	subroutine	simple_picker_utils	main/pick/simple_picker_utils.f90	71	public
detect_peaks	subroutine	simple_pickref	main/pick/simple_pickref.f90	340	private
distance_filter	subroutine	simple_pickref	main/pick/simple_pickref.f90	384	private
get_loc_sdevs	subroutine	simple_pickref	main/pick/simple_pickref.f90	550	private
get_nboxes	function	simple_pickref	main/pick/simple_pickref.f90	574	private
get_positions	subroutine	simple_pickref	main/pick/simple_pickref.f90	529	private
get_scores	subroutine	simple_pickref	main/pick/simple_pickref.f90	557	private
kill	subroutine	simple_pickref	main/pick/simple_pickref.f90	742	private
match_boximgs	subroutine	simple_pickref	main/pick/simple_pickref.f90	285	private
multiref_merge	subroutine	simple_pickref	main/pick/simple_pickref.f90	773	public
new	subroutine	simple_pickref	main/pick/simple_pickref.f90	125	private
peak_vs_nonpeak_stats	subroutine	simple_pickref	main/pick/simple_pickref.f90	473	private
read_mic_raw_pickref	subroutine	simple_pickref	main/pick/simple_pickref.f90	73	public
refine_upscaled	subroutine	simple_pickref	main/pick/simple_pickref.f90	668	private
refpick	subroutine	simple_pickref	main/pick/simple_pickref.f90	90	private
remove_outliers	subroutine	simple_pickref	main/pick/simple_pickref.f90	447	private
report_boxfile	subroutine	simple_pickref	main/pick/simple_pickref.f90	605	private
report_thumb_den	subroutine	simple_pickref	main/pick/simple_pickref.f90	595	private
setup_iterators	subroutine	simple_pickref	main/pick/simple_pickref.f90	237	private
write_boxfile	subroutine	simple_pickref	main/pick/simple_pickref.f90	581	private
center_mass_cc	function	simple_pickseg	main/pick/simple_pickseg.f90	197	private
get_boxsize	function	simple_pickseg	main/pick/simple_pickseg.f90	216	private
get_ldim	function	simple_pickseg	main/pick/simple_pickseg.f90	222	private
get_nboxes	function	simple_pickseg	main/pick/simple_pickseg.f90	228	private
get_positions	subroutine	simple_pickseg	main/pick/simple_pickseg.f90	240	private
get_smpd_shrink	function	simple_pickseg	main/pick/simple_pickseg.f90	234	private
pick	subroutine	simple_pickseg	main/pick/simple_pickseg.f90	48	private
report_boxfile	subroutine	simple_pickseg	main/pick/simple_pickseg.f90	259	private
dealloc_objs	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	114	private
dealloc_objs	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	260	private
get_diameters	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	279	private
kill	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	379	private
pick_1	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	36	private
pick_2	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	126	private
pick_3	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	175	private
write_diameters	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	303	private
write_pos_and_diams	subroutine	simple_picksegdiam	main/pick/simple_picksegdiam.f90	334	private
calc_eigvals	subroutine	simple_ppca	main/pca/simple_ppca.f90	380	private
em_opt	subroutine	simple_ppca	main/pca/simple_ppca.f90	297	private
generate_ppca	subroutine	simple_ppca	main/pca/simple_ppca.f90	90	private
get_eigvals_ppca	function	simple_ppca	main/pca/simple_ppca.f90	65	private
get_feat_ppca	function	simple_ppca	main/pca/simple_ppca.f90	58	private
get_signal_eigvals_ppca	function	simple_ppca	main/pca/simple_ppca.f90	75	private
init	subroutine	simple_ppca	main/pca/simple_ppca.f90	273	private
kill_ppca	subroutine	simple_ppca	main/pca/simple_ppca.f90	403	private
master_ppca	subroutine	simple_ppca	main/pca/simple_ppca.f90	98	private
new_ppca	subroutine	simple_ppca	main/pca/simple_ppca.f90	43	private
reconstruct_external_ppca	subroutine	simple_ppca	main/pca/simple_ppca.f90	162	private
set_verbose_ppca	subroutine	simple_ppca	main/pca/simple_ppca.f90	147	private
slim_ppca	subroutine	simple_ppca	main/pca/simple_ppca.f90	153	private
cleanup_interface	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	80	private
create_preprocess_strategy	function	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	100	public
distr_cleanup	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	395	private
distr_end_message	function	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	404	private
distr_execute	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	375	private
distr_finalize_run	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	388	private
distr_initialize	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	344	private
endmsg_interface	function	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	87	private
exec_interface	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	66	private
finalize_interface	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	73	private
init_interface	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	59	private
inmem_cleanup	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	327	private
inmem_end_message	function	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	334	private
inmem_execute	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	162	private
inmem_finalize_run	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	320	private
inmem_initialize	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	151	private
set_preprocess_defaults	subroutine	simple_preprocess_strategy	main/strategies/parallelization/simple_preprocess_strategy.f90	120	private
get_n_private_keys_optional	function	simple_private_prgs	utils/simple_private_prgs.f90	99	private
get_n_private_keys_required	function	simple_private_prgs	utils/simple_private_prgs.f90	64	public
get_private_keys_optional	function	simple_private_prgs	utils/simple_private_prgs.f90	113	private
get_private_keys_required	function	simple_private_prgs	utils/simple_private_prgs.f90	79	public
init_cmd_dict	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	217	private
make_private_ui	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	59	public
new_private_prgs	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	513	private
print_cmdline_oldschool	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	174	public
print_private_cmdline	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	134	public
push_opt_key	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	50	private
push_req_key	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	43	private
set_name	subroutine	simple_private_prgs	utils/simple_private_prgs.f90	37	private
add_noise_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	349	public
apply_ctf_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	597	public
bp_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	398	public
bs_smoother_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	476	public
clip_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	139	public
copy_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	25	public
diffmap_denoise_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	561	public
icm_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	503	public
loc_sdev_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	689	public
mask_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	636	public
mirror_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	195	public
neg_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	325	public
nlmean_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	536	public
noise_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	374	public
noise_norm_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	299	public
norm_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	275	public
pad_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	51	public
phase_rand_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	452	public
quantize_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	716	public
raise_exception_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	12	public
random_cls_from_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	918	public
random_selection_from_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	779	public
real_filter_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	426	public
roavg_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	168	public
scale_and_clip_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	220	public
scale_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	87	public
selection_from_tseries_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	844	public
shift_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	742	public
taper_edges_imgfile	subroutine	simple_procimgstk	utils/simple_procimgstk.f90	663	public
lastfoundfile_update	subroutine	simple_progress	utils/simple_progress.f90	136	public
progress_estimate_2D	function	simple_progress	utils/simple_progress.f90	95	public
progress_estimate_preprocess_stream	function	simple_progress	utils/simple_progress.f90	89	public
progressfile_complete_parts	subroutine	simple_progress	utils/simple_progress.f90	76	public
progressfile_init	subroutine	simple_progress	utils/simple_progress.f90	8	public
progressfile_init_part	subroutine	simple_progress	utils/simple_progress.f90	27	public
progressfile_init_parts	subroutine	simple_progress	utils/simple_progress.f90	19	public
progressfile_update	subroutine	simple_progress	utils/simple_progress.f90	39	public
progressfile_update_part	subroutine	simple_progress	utils/simple_progress.f90	57	public
cleanup_files	subroutine	simple_project_merge_tester	main/project/simple_project_merge_tester.f90	232	private
fill_class_row	subroutine	simple_project_merge_tester	main/project/simple_project_merge_tester.f90	221	private
fill_particle_row	subroutine	simple_project_merge_tester	main/project/simple_project_merge_tester.f90	203	private
make_project	subroutine	simple_project_merge_tester	main/project/simple_project_merge_tester.f90	158	private
run_all_project_merge_tests	subroutine	simple_project_merge_tester	main/project/simple_project_merge_tester.f90	15	public
test_merge_pruned_stack_indexing_heterogeneous_ctf	subroutine	simple_project_merge_tester	main/project/simple_project_merge_tester.f90	21	private
test_validate_projfile_normalizes_legacy_stack_indices	subroutine	simple_project_merge_tester	main/project/simple_project_merge_tester.f90	112	private
expand_cmat	subroutine	simple_projector	main/image/simple_projector.f90	41	private
fproject	subroutine	simple_projector	main/image/simple_projector.f90	123	private
fproject_serial	subroutine	simple_projector	main/image/simple_projector.f90	160	private
get_kbwin	function	simple_projector	main/image/simple_projector.f90	112	private
interp_fcomp	function	simple_projector	main/image/simple_projector.f90	218	private
interp_fcomp_oversamp	function	simple_projector	main/image/simple_projector.f90	195	private
kill_expanded	subroutine	simple_projector	main/image/simple_projector.f90	235	private
reset_expanded	subroutine	simple_projector	main/image/simple_projector.f90	98	private
fproject_polar	subroutine	simple_projector_pft	main/image/simple_projector_pft.f90	14	public
fproject_polar_oversamp	subroutine	simple_projector_pft	main/image/simple_projector_pft.f90	33	public
fproject_polar_batch	subroutine	simple_projector_pft_batch	main/image/simple_projector_pft_batch.f90	15	public
fproject_polar_batch_mirr	subroutine	simple_projector_pft_batch	main/image/simple_projector_pft_batch.f90	58	public
fproject_polar_batch_opt	subroutine	simple_projector_pft_batch	main/image/simple_projector_pft_batch.f90	124	public
fproject_polar_batch_opt_kernel	subroutine	simple_projector_pft_batch	main/image/simple_projector_pft_batch.f90	181	private
absolutize_project_stack_paths	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	886	public
copy_particle_row	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	770	public
err	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	979	public
make_prefix_offsets	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	499	public
merge_chunk_projfiles	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	14	public
merge_selected_project_files	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	260	public
remap_row_ogid	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	874	public
repair	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	985	public
repair_particle_segment	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	1131	public
repair_stack_counts_without_particles	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	991	public
repair_stack_nptcls_stk	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	1111	public
repair_stack_ranges	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	1004	public
require_row_field	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	823	public
set_stack_int_if_changed	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	1193	public
validate_and_repair_project_file	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	912	public
validate_field_presence	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	509	public
validate_mic_sampling	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	754	public
validate_particle_field	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	578	public
validate_source_project	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	523	public
validate_stack_dimensions	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	728	public
validate_stack_particle_ranges	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	642	public
warn	subroutine	simple_projfile_utils	fileio/simple_projfile_utils.f90	973	public
iterate	subroutine	simple_pspec_thumb_iter	main/simple_pspec_thumb_iter.f90	24	private
calc_distmat_1	function	simple_pspecs	main/simple_pspecs.f90	94	private
calc_distmat_2	function	simple_pspecs	main/simple_pspecs.f90	109	private
get_nspecs	function	simple_pspecs	main/simple_pspecs.f90	86	private
kill	subroutine	simple_pspecs	main/simple_pspecs.f90	125	private
new	subroutine	simple_pspecs	main/simple_pspecs.f90	40	private
append_chunk_coarse	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	620	private
append_chunk_fine	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	633	private
cleanup_chunk	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1448	private
collect_and_reject	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1157	private
combine_completed_chunks	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1029	private
cycle	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	424	private
draw_reason_key_swatches	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1946	private
generate_chunk_coarse_cline	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	970	private
generate_chunk_fine_cline	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	996	private
generate_chunks_coarse	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	657	private
generate_chunks_fine	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	836	private
import_existing_chunks_coarse	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	335	private
import_existing_chunks_fine	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	378	private
kill	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	280	private
merge_and_clear	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1977	private
new	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	223	private
paint_mask_outline	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1863	private
paint_reason_border	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1838	private
reject_cavgs	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1278	private
remove_duplicates	function	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	2001	private
set_final_ingestion	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	315	private
submit	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1109	private
timer_stop	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	2032	private
unset_final_ingestion	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	321	private
write_rejection_reason_overlay_jpg	subroutine	simple_ptcl_sieve	main/sieve/simple_ptcl_sieve.f90	1685	private
init_test_params	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	221	private
make_chunk_project	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	271	private
run_all_ptcl_sieve_tests	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	18	public
setup_workspace	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	252	private
teardown_workspace	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	264	private
test_cycle_empty_project_list	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	201	private
test_finished_semantics	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	102	private
test_import_existing_chunks_and_counts	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	59	private
test_new_accepts_tuning_overrides	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	181	private
test_new_kill_and_empty_queries	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	28	private
test_single_pass_ignores_incomplete_fine	subroutine	simple_ptcl_sieve_tester	main/sieve/simple_ptcl_sieve_tester.f90	146	private
generate_sieve_projects	subroutine	simple_ptcl_sieve_utils	main/sieve/simple_ptcl_sieve_utils.f90	25	public
generic_kill	subroutine	simple_qsys_base	utils/qsys/simple_qsys_base.f90	53	private
generic_new	subroutine	simple_qsys_base	utils/qsys/simple_qsys_base.f90	20	private
generic_submit_cmd	function	simple_qsys_base	utils/qsys/simple_qsys_base.f90	26	private
generic_write_array_instr	subroutine	simple_qsys_base	utils/qsys/simple_qsys_base.f90	43	private
generic_write_instr	subroutine	simple_qsys_base	utils/qsys/simple_qsys_base.f90	34	private
get_coarray_submit_cmd	function	simple_qsys_coarray	utils/qsys/simple_qsys_coarray.f90	43	private
kill_coarray_env	subroutine	simple_qsys_coarray	utils/qsys/simple_qsys_coarray.f90	68	private
new_coarray_env	subroutine	simple_qsys_coarray	utils/qsys/simple_qsys_coarray.f90	28	private
write_coarray_array_header	subroutine	simple_qsys_coarray	utils/qsys/simple_qsys_coarray.f90	59	private
write_coarray_header	subroutine	simple_qsys_coarray	utils/qsys/simple_qsys_coarray.f90	51	private
worker_warmup_callback	subroutine	simple_qsys_ctrl	utils/qsys/simple_qsys_ctrl.f90	22	private
diagnose_parallelism	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	329	private
exec_simple_prg_in_queue	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	461	private
exec_simple_prg_in_queue_async	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	481	private
exec_simple_prgs_in_queue_async	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	518	private
exists	function	simple_qsys_env	utils/qsys/simple_qsys_env.f90	385	private
gen_script	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	392	private
gen_scripts_and_schedule_jobs	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	401	private
gen_subproject_scripts_and_schedule	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	445	private
get_exec_bin	function	simple_qsys_env	utils/qsys/simple_qsys_env.f90	629	private
get_persistent_worker_server_address	function	simple_qsys_env	utils/qsys/simple_qsys_env.f90	604	private
get_qsys	function	simple_qsys_env	utils/qsys/simple_qsys_env.f90	636	private
init_qdescr_from_runtime	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	66	private
kill	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	664	private
new	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	112	private
persistent_worker_warmup_callback	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	304	private
schedule_subproject_jobs	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	455	private
service_persistent_worker_warmup	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	315	private
standard_exec_path	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	283	private
start_persistent_workers	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	556	private
validate_requested_qsys	subroutine	simple_qsys_env	utils/qsys/simple_qsys_env.f90	292	private
kill	subroutine	simple_qsys_factory	utils/qsys/simple_qsys_factory.f90	58	private
new	subroutine	simple_qsys_factory	utils/qsys/simple_qsys_factory.f90	29	private
get_local_submit_cmd	function	simple_qsys_local	utils/qsys/simple_qsys_local.f90	35	private
kill_local_env	subroutine	simple_qsys_local	utils/qsys/simple_qsys_local.f90	57	private
new_local_env	subroutine	simple_qsys_local	utils/qsys/simple_qsys_local.f90	26	private
write_local_array_header	subroutine	simple_qsys_local	utils/qsys/simple_qsys_local.f90	49	private
write_local_header	subroutine	simple_qsys_local	utils/qsys/simple_qsys_local.f90	42	private
get_lsf_submit_cmd	function	simple_qsys_lsf	utils/qsys/simple_qsys_lsf.f90	44	private
kill_lsf_env	subroutine	simple_qsys_lsf	utils/qsys/simple_qsys_lsf.f90	112	private
new_lsf_env	subroutine	simple_qsys_lsf	utils/qsys/simple_qsys_lsf.f90	27	private
write_lsf_array_header	subroutine	simple_qsys_lsf	utils/qsys/simple_qsys_lsf.f90	104	private
write_lsf_header	subroutine	simple_qsys_lsf	utils/qsys/simple_qsys_lsf.f90	51	private
get_pbs_submit_cmd	function	simple_qsys_pbs	utils/qsys/simple_qsys_pbs.f90	49	private
kill_pbs_env	subroutine	simple_qsys_pbs	utils/qsys/simple_qsys_pbs.f90	132	private
new_pbs_env	subroutine	simple_qsys_pbs	utils/qsys/simple_qsys_pbs.f90	26	private
write_formatted	subroutine	simple_qsys_pbs	utils/qsys/simple_qsys_pbs.f90	103	private
write_pbs_array_header	subroutine	simple_qsys_pbs	utils/qsys/simple_qsys_pbs.f90	124	private
write_pbs_header	subroutine	simple_qsys_pbs	utils/qsys/simple_qsys_pbs.f90	56	private
get_worker_submit_cmd	function	simple_qsys_persistent_worker	utils/qsys/simple_qsys_persistent_worker.f90	72	private
kill_worker_env	subroutine	simple_qsys_persistent_worker	utils/qsys/simple_qsys_persistent_worker.f90	155	private
new_worker_env	subroutine	simple_qsys_persistent_worker	utils/qsys/simple_qsys_persistent_worker.f90	63	private
write_worker_array_header	subroutine	simple_qsys_persistent_worker	utils/qsys/simple_qsys_persistent_worker.f90	119	private
write_worker_header	subroutine	simple_qsys_persistent_worker	utils/qsys/simple_qsys_persistent_worker.f90	84	private
get_sge_submit_cmd	function	simple_qsys_sge	utils/qsys/simple_qsys_sge.f90	44	private
kill_sge_env	subroutine	simple_qsys_sge	utils/qsys/simple_qsys_sge.f90	121	private
new_sge_env	subroutine	simple_qsys_sge	utils/qsys/simple_qsys_sge.f90	26	private
write_sge_array_header	subroutine	simple_qsys_sge	utils/qsys/simple_qsys_sge.f90	113	private
write_sge_header	subroutine	simple_qsys_sge	utils/qsys/simple_qsys_sge.f90	51	private
get_slurm_submit_cmd	function	simple_qsys_slurm	utils/qsys/simple_qsys_slurm.f90	51	private
kill_slurm_env	subroutine	simple_qsys_slurm	utils/qsys/simple_qsys_slurm.f90	151	private
new_slurm_env	subroutine	simple_qsys_slurm	utils/qsys/simple_qsys_slurm.f90	27	private
write_slurm_array_header	subroutine	simple_qsys_slurm	utils/qsys/simple_qsys_slurm.f90	96	private
write_slurm_header	subroutine	simple_qsys_slurm	utils/qsys/simple_qsys_slurm.f90	58	private
r8mat_cholesky_factor	subroutine	simple_r8lib	utils/math/simple_r8lib.f90	16	public
r8mat_cholesky_solve	subroutine	simple_r8lib	utils/math/simple_r8lib.f90	53	public
r8mat_l_solve	subroutine	simple_r8lib	utils/math/simple_r8lib.f90	67	private
r8mat_lt_solve	subroutine	simple_r8lib	utils/math/simple_r8lib.f90	84	private
cleanup_interface	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	74	private
create_rec3D_strategy	function	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	89	public
distr_cleanup	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	293	private
distr_execute	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	238	private
distr_finalize_run	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	267	private
distr_initialize	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	202	private
exec_interface	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	58	private
finalize_interface	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	66	private
init_interface	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	50	private
inmem_cleanup	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	186	private
inmem_execute	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	120	private
inmem_finalize_run	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	178	private
inmem_initialize	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	106	private
maybe_postprocess_reconstruct3D	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	321	private
sync_resolved_rec_params	subroutine	simple_rec3D_strategy	main/strategies/parallelization/simple_rec3D_strategy.f90	307	private
append	function	simple_rec_list	utils/structs/simple_rec_list.f90	362	private
assign	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	393	private
at_chunk_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	325	private
at_process_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	310	private
at_project_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	295	private
at_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	280	private
begin	function	simple_rec_list	utils/structs/simple_rec_list.f90	342	private
end	function	simple_rec_list	utils/structs/simple_rec_list.f90	348	private
end_iter	function	simple_rec_list	utils/structs/simple_rec_list.f90	354	private
get_busy_flags	function	simple_rec_list	utils/structs/simple_rec_list.f90	505	private
get_ids	function	simple_rec_list	utils/structs/simple_rec_list.f90	406	private
get_included_flags	function	simple_rec_list	utils/structs/simple_rec_list.f90	453	private
get_nptcls	function	simple_rec_list	utils/structs/simple_rec_list.f90	425	private
get_processed_flags	function	simple_rec_list	utils/structs/simple_rec_list.f90	481	private
get_projfiles	function	simple_rec_list	utils/structs/simple_rec_list.f90	619	private
get_projnames	function	simple_rec_list	utils/structs/simple_rec_list.f90	646	private
iter_advance	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	150	private
iter_get_chunk_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	205	private
iter_get_process_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	191	private
iter_get_project_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	177	private
iter_get_rec	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	163	private
iter_next	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	145	private
iter_replace	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	156	private
kill	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	399	private
print_file	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	133	private
print_proc	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	128	private
print_proj	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	123	private
push2chunk_list	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	232	private
push2project_list	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	246	private
push_back	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	226	private
rec_print	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	21	private
replace_at	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	261	private
replace_iterator	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	268	private
replace_with	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	385	private
set_included_flags	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	533	private
slice	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	378	private
subset_to	subroutine	simple_rec_list	utils/structs/simple_rec_list.f90	369	private
run_all_rec_list_tests	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	14	public
test_append_operator	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	184	private
test_assign_semantics	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	217	private
test_default_and_size	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	33	private
test_flag_included	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	151	private
test_included_mask	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	128	private
test_iterator_replace	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	108	private
test_iterator_traversal	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	65	private
test_kill_behavior	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	230	private
test_particle_sums	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	165	private
test_push_back_and_at	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	42	private
test_replace_at	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	87	private
test_slice_subset	subroutine	simple_rec_list_tester	utils/structs/simple_rec_list_tester.f90	199	private
add_conical_invtausq2rho	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	918	private
add_invtausq2rho	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	851	private
alloc_rho	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	67	private
apply_weight	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	134	private
compress_exp	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	533	private
dealloc_exp	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	1016	private
dealloc_rho	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	1023	private
expand_exp	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	572	private
get_kbwin	function	simple_reconstructor	main/volume/simple_reconstructor.f90	165	private
insert_plane_oversamp	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	215	private
insert_plane_oversamp_opt	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	372	private
interp_cmat_exp	function	simple_reconstructor	main/volume/simple_reconstructor.f90	750	private
kb_apod_vecs_3d_fast	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	337	private
kernel	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	421	private
pad_with_zeros	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	155	private
project_fplane	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	649	private
project_polar	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	596	private
read_raw_rho	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	200	private
read_rho	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	187	private
reset	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	115	private
reset_exp	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	122	private
sampl_dens_correct	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	511	private
set_sh_lim	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	145	private
sum_reduce	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	845	private
write_absfc_as_mrc	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	813	private
write_rho	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	173	private
write_rho_as_mrc	subroutine	simple_reconstructor	main/volume/simple_reconstructor.f90	784	private
apply_weight	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	168	private
calc_fsc4sampl_dens_correct	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	647	private
compress_exp	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	436	private
expand_exp	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	443	private
get_kbwin	function	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	185	private
get_res	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	194	private
grid_plane	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	386	private
grid_plane_compact	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	403	private
kill	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	719	private
kill_exp	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	709	private
load_state_mask_or_fallback	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	613	private
new	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	83	private
project_polar	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	449	private
read_eos	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	233	private
read_eos_parallel_io	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	246	private
read_even	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	348	private
read_odd	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	366	private
reset_all	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	129	private
reset_eoexp	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	144	private
reset_eos	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	137	private
reset_even	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	151	private
reset_odd	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	157	private
reset_sum	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	163	private
sampl_dens_correct_eos	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	462	private
sampl_dens_correct_sum	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	695	private
set_sh_lim	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	175	private
sum_eos	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	420	private
sum_reduce	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	428	private
write_eos	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	209	private
write_even	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	217	private
write_fsc2txt	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	677	private
write_odd	subroutine	simple_reconstructor_eo	main/volume/simple_reconstructor_eo.f90	225	private
calc_3Drec_gpu	subroutine	simple_reconstructor_openmpoffload	main/volume/simple_reconstructor_openmpoffload.f90	23	public
insert_all_slices	subroutine	simple_reconstructor_openmpoffload	main/volume/simple_reconstructor_openmpoffload.f90	109	private
insert_slices_batch	subroutine	simple_reconstructor_openmpoffload	main/volume/simple_reconstructor_openmpoffload.f90	242	private
prep_batch	subroutine	simple_reconstructor_openmpoffload	main/volume/simple_reconstructor_openmpoffload.f90	218	private
update_ptcls_arrays	subroutine	simple_reconstructor_openmpoffload	main/volume/simple_reconstructor_openmpoffload.f90	358	private
absT2_plane	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1608	private
accumulate_absT2	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1248	private
accumulate_batch	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1134	private
accumulate_rhs	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1064	private
adjoint_plane_add	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	716	private
apply_adjoint_all	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1015	private
apply_normal	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	837	private
apply_normal_kernel	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	968	private
apply_normal_matrixfree	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	876	private
apply_precond	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1734	private
begin_accum	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1114	private
build_env	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	317	private
build_hk_luts	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	273	private
build_kernel	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1397	private
build_operators	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1420	private
build_precond	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1213	private
build_transfer	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	733	private
calibrate_kernel	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1549	private
crop_vol	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	493	private
deapod_mul	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	415	private
dot_real_volume	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	822	private
end_accum	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1161	private
ensure_wimg	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	472	private
extract_native_plane	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	806	private
finalize_khat	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1456	private
fold_accum_to_khat	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1436	private
fold_and_ifft	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1691	private
forward_plane	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	646	private
fourier_dot	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	676	private
get_env	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	361	private
get_invenv	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	379	private
get_lims2	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1983	private
get_lims3	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1989	private
get_rhs	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	372	private
kill	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	505	private
mask_mul	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	465	private
measure_kernel_scale	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1559	private
new	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	170	private
pad_vol	function	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	482	private
precond_from_accum	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1307	private
prep_particles	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	555	private
report_profile	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	2201	private
reset_profile	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	2180	private
scatter_plane	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1926	private
scatter_window	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1848	private
scatter_window_cmplx_nowrap	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1902	private
scatter_window_nowrap	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1876	private
set_deapod	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	385	private
set_mask	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	447	private
set_op_mode	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	611	private
set_sym	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	599	private
set_volume	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	633	private
solve	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	2011	private
solve_accum	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	2030	private
solve_core	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	2046	private
transfer_plane_cmplx	subroutine	simple_reconstructor_pcg	main/volume/simple_reconstructor_pcg.f90	1674	private
cleanup_interface	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	83	private
create_reextract_strategy	function	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	102	public
distr_cleanup	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	653	private
distr_end_message	function	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	673	private
distr_execute	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	565	private
distr_finalize_run	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	646	private
distr_initialize	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	504	private
endmsg_interface	function	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	90	private
exec_interface	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	69	private
finalize_interface	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	76	private
init_interface	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	62	private
inmem_cleanup	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	487	private
inmem_end_message	function	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	494	private
inmem_execute	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	157	private
inmem_finalize_run	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	480	private
inmem_initialize	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	146	private
killimgbatch_local	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	468	private
prepimgbatch_local	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	443	private
set_reextract_defaults	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	133	private
validate_reextract_cline	subroutine	simple_reextract_strategy	main/strategies/parallelization/simple_reextract_strategy.f90	121	private
refine3D_partial_rec_glob	function	simple_refine3D_fnames	defs/simple_refine3D_fnames.f90	153	public
activate_ptcl3D_states_from_selection	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	302	private
assert_multistate_populations	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	348	private
cleanup_interface	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	134	private
create_refine3D_strategy	function	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	144	public
distr_cleanup	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	1211	private
distr_execute_iteration	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	965	private
distr_finalize_iteration	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	1191	private
distr_finalize_run	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	1198	private
distr_initialize	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	753	private
exec_iter_interface	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	110	private
finalize_iter_interface	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	119	private
finalize_run_interface	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	126	private
init_interface	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	102	private
inmem_cleanup	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	743	private
inmem_execute_iteration	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	548	private
inmem_finalize_iteration	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	689	private
inmem_finalize_run	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	699	private
inmem_initialize	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	475	private
invalidate_fresh_start_refs_from_volumes	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	183	private
materialize_reprojection_model	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	363	private
prepare_assembly_cline	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	156	private
refresh_matching_lp_from_project	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	233	private
refresh_resolution_fields_from_fsc	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	194	private
remove_partial_rec_files	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	282	private
reset_refine3D_bench	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	393	private
seed_multistate_startup_labels	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	326	private
write_stage_bench_report	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	446	private
write_strategy_bench_report	subroutine	simple_refine3D_strategy	main/strategies/parallelization/simple_refine3D_strategy.f90	411	private
allocate_opticsgroups	subroutine	simple_relion	main/star/simple_relion.f90	617	private
create	subroutine	simple_relion	main/star/simple_relion.f90	665	private
find_movienames	subroutine	simple_relion	main/star/simple_relion.f90	410	private
generate_epu_tiltgroups	subroutine	simple_relion	main/star/simple_relion.f90	444	private
generate_single_tiltgroup	subroutine	simple_relion	main/star/simple_relion.f90	481	private
generate_xml_tiltgroups	subroutine	simple_relion	main/star/simple_relion.f90	492	private
h_clust	subroutine	simple_relion	main/star/simple_relion.f90	697	private
write_corrected_micrographs_star	subroutine	simple_relion	main/star/simple_relion.f90	33	private
write_micrographs_star	subroutine	simple_relion	main/star/simple_relion.f90	127	private
write_particles2D_star	subroutine	simple_relion	main/star/simple_relion.f90	245	private
create_empty	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	193	private
get_resrange	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	203	private
kill	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	211	private
new	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	39	private
new_from_file	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	57	private
open_and_check_header	function	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	135	private
read	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	77	private
read_header	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	170	private
write	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	97	private
write_info	subroutine	simple_sigma2_binfile	fileio/simple_sigma2_binfile.f90	127	private
carry_over_prior_sigma_files	subroutine	simple_sigma2_files	fileio/simple_sigma2_files.f90	34	public
copy_sigma_files_from_dir	subroutine	simple_sigma2_files	fileio/simple_sigma2_files.f90	75	private
load_sigma2_groups	subroutine	simple_sigma2_files	fileio/simple_sigma2_files.f90	171	public
pick_sigma_group_file	subroutine	simple_sigma2_files	fileio/simple_sigma2_files.f90	106	public
reproject	function	simple_simple_volinterp	main/volume/simple_volinterp.f90	11	public
rotvol	function	simple_simple_volinterp	main/volume/simple_volinterp.f90	82	public
rotvol_slim	subroutine	simple_simple_volinterp	main/volume/simple_volinterp.f90	107	public
simimg	subroutine	simple_simulator	main/simple_simulator.f90	8	public
accept	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	204	private
bind_any	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	187	private
c_accept	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	85	private
c_bind	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	71	private
c_close	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	100	private
c_connect	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	92	private
c_errno	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	135	private
c_htons	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	122	private
c_inet_pton	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	128	private
c_listen	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	79	private
c_read	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	114	private
c_send	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	106	private
c_setsockopt	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	64	private
c_socket	function	simple_socket_comm	utils/comm/simple_socket_comm.f90	58	private
close_1	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	277	private
close_2	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	287	private
listen	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	197	private
open	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	145	private
read_1	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	235	private
read_2	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	266	private
send_1	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	216	private
set_options	subroutine	simple_socket_comm	utils/comm/simple_socket_comm.f90	175	private
get_full2sub_map	function	simple_srchspace_map	utils/simple_srchspace_map.f90	95	private
get_inds_in_full	function	simple_srchspace_map	utils/simple_srchspace_map.f90	72	private
get_sub2full_map	function	simple_srchspace_map	utils/simple_srchspace_map.f90	85	private
kill	subroutine	simple_srchspace_map	utils/simple_srchspace_map.f90	138	private
new_from_distmat	subroutine	simple_srchspace_map	utils/simple_srchspace_map.f90	33	private
new_from_maps	subroutine	simple_srchspace_map	utils/simple_srchspace_map.f90	50	private
read_srchspace_map2D	subroutine	simple_srchspace_map2D_io	fileio/simple_srchspace_map2D_io.f90	87	public
test_srchspace_map2D_io	subroutine	simple_srchspace_map2D_io	fileio/simple_srchspace_map2D_io.f90	124	public
write_srchspace_map2D	subroutine	simple_srchspace_map2D_io	fileio/simple_srchspace_map2D_io.f90	20	public
close	subroutine	simple_stack_io	fileio/simple_stack_io.f90	216	private
get_image	subroutine	simple_stack_io	fileio/simple_stack_io.f90	120	private
get_ldim	function	simple_stack_io	fileio/simple_stack_io.f90	106	private
get_nptcls	function	simple_stack_io	fileio/simple_stack_io.f90	100	private
open_1	subroutine	simple_stack_io	fileio/simple_stack_io.f90	39	private
open_2	subroutine	simple_stack_io	fileio/simple_stack_io.f90	54	private
read	subroutine	simple_stack_io	fileio/simple_stack_io.f90	130	private
read_whole	subroutine	simple_stack_io	fileio/simple_stack_io.f90	159	private
same_stk	function	simple_stack_io	fileio/simple_stack_io.f90	112	private
write	subroutine	simple_stack_io	fileio/simple_stack_io.f90	171	private
write_buffer	subroutine	simple_stack_io	fileio/simple_stack_io.f90	206	private
acf_stack	subroutine	simple_stackops	utils/simple_stackops.f90	152	public
frameavg_stack	subroutine	simple_stackops	utils/simple_stackops.f90	117	public
make_avg_stack	subroutine	simple_stackops	utils/simple_stackops.f90	91	public
make_pcavec_stack	subroutine	simple_stackops	utils/simple_stackops.f90	30	public
prep_imgfile4movie	subroutine	simple_stackops	utils/simple_stackops.f90	204	public
raise_exception	subroutine	simple_stackops	utils/simple_stackops.f90	15	private
stats_imgfile	subroutine	simple_stackops	utils/simple_stackops.f90	171	public
calc_part_boundaries	subroutine	simple_starfile	main/star/simple_starfile.f90	81	private
complete	subroutine	simple_starfile	main/star/simple_starfile.f90	65	private
get_relative_path_here	function	simple_starfile	main/star/simple_starfile.f90	334	private
get_relative_path_here	function	simple_starfile	main/star/simple_starfile.f90	433	private
get_relative_path_here	function	simple_starfile	main/star/simple_starfile.f90	590	private
init	subroutine	simple_starfile	main/star/simple_starfile.f90	46	private
write_mics_table	subroutine	simple_starfile	main/star/simple_starfile.f90	215	private
write_optics_table	subroutine	simple_starfile	main/star/simple_starfile.f90	112	private
write_ptcl2D_table	subroutine	simple_starfile	main/star/simple_starfile.f90	355	private
write_ptcl2D_table_parallel	subroutine	simple_starfile	main/star/simple_starfile.f90	452	private
fill_ptcl_stk	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	647	private
make_oris_n	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	154	private
run_all_starfile_tests	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	25	public
setup_tmpdir	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	64	private
test_complete_noop_without_tmp	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	192	private
test_complete_overwrites_existing	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	203	private
test_complete_renames_tmp	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	178	private
test_init_creates_no_files	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	167	private
test_init_removes_stale_tmp	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	217	private
test_verbose_flag_no_content_change	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	667	private
test_write_mics_table_all_fields	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	391	private
test_write_mics_table_basic	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	332	private
test_write_mics_table_empty	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	375	private
test_write_mics_table_state_filter	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	352	private
test_write_optics_table_all_fields	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	297	private
test_write_optics_table_basic	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	241	private
test_write_optics_table_empty	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	281	private
test_write_optics_table_state_filter	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	260	private
test_write_ptcl2D_parallel_basic	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	556	private
test_write_ptcl2D_parallel_count	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	596	private
test_write_ptcl2D_parallel_empty	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	578	private
test_write_ptcl2D_parallel_vs_serial	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	618	private
test_write_ptcl2D_table_bad_stkind	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	469	private
test_write_ptcl2D_table_basic	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	419	private
test_write_ptcl2D_table_indstk_explicit	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	494	private
test_write_ptcl2D_table_state_filter	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	443	private
test_write_ptcl2D_table_with_mics	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	518	private
tmp	function	simple_starfile_tester	main/star/simple_starfile_tester.f90	72	private
write_dummy_file	subroutine	simple_starfile_tester	main/star/simple_starfile_tester.f90	228	private
C_dealloc_str	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	127	private
C_print_pointer	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	15	private
C_starfile_table__addObject	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	30	private
C_starfile_table__append	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	235	private
C_starfile_table__clear	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	132	private
C_starfile_table__close_ofile	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	158	private
C_starfile_table__delete	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	25	private
C_starfile_table__firstobject	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	202	private
C_starfile_table__getValue_bool	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	108	private
C_starfile_table__getValue_double	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	81	private
C_starfile_table__getValue_float	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	90	private
C_starfile_table__getValue_int	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	99	private
C_starfile_table__getValue_string	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	117	private
C_starfile_table__getcomment	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	182	private
C_starfile_table__getnames_cnt	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	220	private
C_starfile_table__getnames_nr	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	227	private
C_starfile_table__hasLabel	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	195	private
C_starfile_table__hascomment	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	189	private
C_starfile_table__new	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	20	private
C_starfile_table__nextobject	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	214	private
C_starfile_table__numberofobjects	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	208	private
C_starfile_table__open_ofile	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	137	private
C_starfile_table__read	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	163	private
C_starfile_table__setIsList	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	35	private
C_starfile_table__setValue_bool	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	65	private
C_starfile_table__setValue_double	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	41	private
C_starfile_table__setValue_float	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	49	private
C_starfile_table__setValue_int	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	57	private
C_starfile_table__setValue_string	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	73	private
C_starfile_table__setcomment	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	176	private
C_starfile_table__setname	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	170	private
C_starfile_table__write_ofile	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	144	private
C_starfile_table__write_omem	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	150	private
starfile_table__addObject	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	256	private
starfile_table__append	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	495	private
starfile_table__clear	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	433	private
starfile_table__close_ofile	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	490	private
starfile_table__delete	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	250	private
starfile_table__firstobject	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	565	private
starfile_table__getValue_bool	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	388	private
starfile_table__getValue_double	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	343	private
starfile_table__getValue_float	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	358	private
starfile_table__getValue_int	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	373	private
starfile_table__getValue_string	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	403	private
starfile_table__getcomment	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	532	private
starfile_table__getnames	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	583	private
starfile_table__hascomment	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	548	private
starfile_table__haslabel	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	556	private
starfile_table__new	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	245	private
starfile_table__nextobject	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	577	private
starfile_table__numberofobjects	function	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	571	private
starfile_table__open_ofile	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	438	private
starfile_table__read	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	501	private
starfile_table__setIsList	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	261	private
starfile_table__setValue_bool	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	311	private
starfile_table__setValue_double	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	269	private
starfile_table__setValue_float	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	283	private
starfile_table__setValue_int	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	297	private
starfile_table__setValue_string	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	327	private
starfile_table__setcomment	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	524	private
starfile_table__setname	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	516	private
starfile_table__write_ofile	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	453	private
starfile_table__write_omem	subroutine	simple_starfile_wrappers	main/star/simple_starfile_wrapper.f90	464	private
apply_optics_offset	subroutine	simple_starproject	main/star/simple_starproject.f90	1540	private
assign_initial_tiltgroups	subroutine	simple_starproject	main/star/simple_starproject.f90	1169	private
assign_optics	subroutine	simple_starproject	main/star/simple_starproject.f90	1269	private
assign_xml_tiltinfo	subroutine	simple_starproject	main/star/simple_starproject.f90	1203	private
check_stk_params	subroutine	simple_starproject	main/star/simple_starproject.f90	633	private
cluster_tiltinfo	subroutine	simple_starproject	main/star/simple_starproject.f90	1226	private
export_cls2D	subroutine	simple_starproject	main/star/simple_starproject.f90	743	private
export_iter3D	subroutine	simple_starproject	main/star/simple_starproject.f90	784	private
export_manifoldem_ptcls3D	subroutine	simple_starproject	main/star/simple_starproject.f90	963	private
export_mics	subroutine	simple_starproject	main/star/simple_starproject.f90	717	private
export_opticsgroups	subroutine	simple_starproject	main/star/simple_starproject.f90	1474	private
export_ptcls2D	subroutine	simple_starproject	main/star/simple_starproject.f90	921	private
export_ptcls3D	subroutine	simple_starproject	main/star/simple_starproject.f90	942	private
export_stardata	subroutine	simple_starproject	main/star/simple_starproject.f90	1054	private
export_stream2D	subroutine	simple_starproject	main/star/simple_starproject.f90	897	private
get_image_basename	subroutine	simple_starproject	main/star/simple_starproject.f90	1607	private
import_cls2D	subroutine	simple_starproject	main/star/simple_starproject.f90	223	private
import_mics	subroutine	simple_starproject	main/star/simple_starproject.f90	174	private
import_ptcls	subroutine	simple_starproject	main/star/simple_starproject.f90	269	private
import_ptcls2D	subroutine	simple_starproject	main/star/simple_starproject.f90	198	private
import_ptcls3D	subroutine	simple_starproject	main/star/simple_starproject.f90	243	private
import_stardata	subroutine	simple_starproject	main/star/simple_starproject.f90	311	private
initialise	subroutine	simple_starproject	main/star/simple_starproject.f90	68	private
kill	subroutine	simple_starproject	main/star/simple_starproject.f90	1671	private
plot_opticsgroups	subroutine	simple_starproject	main/star/simple_starproject.f90	1437	private
populate_opticsmap	subroutine	simple_starproject	main/star/simple_starproject.f90	1416	private
populate_stkmap	subroutine	simple_starproject	main/star/simple_starproject.f90	417	private
propagate_optics2D	subroutine	simple_starproject	main/star/simple_starproject.f90	1573	private
propagate_optics3D	subroutine	simple_starproject	main/star/simple_starproject.f90	1590	private
propagate_optics_box	subroutine	simple_starproject	main/star/simple_starproject.f90	1549	private
read_starheaders	subroutine	simple_starproject	main/star/simple_starproject.f90	540	private
set_verbose	subroutine	simple_starproject	main/star/simple_starproject.f90	1666	private
sort_optics_maxpop	subroutine	simple_starproject	main/star/simple_starproject.f90	1519	private
assign_optics	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	584	private
assign_optics_single	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	560	private
assign_shiftgroups	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	641	private
assign_tiltgroups	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	622	private
copy_micrographs_optics	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	828	private
copy_optics	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	795	private
get_relative_path_here	function	simple_starproject_stream	main/star/simple_starproject_stream.f90	224	private
get_relative_path_here	function	simple_starproject_stream	main/star/simple_starproject_stream.f90	277	private
get_relative_path_here	function	simple_starproject_stream	main/star/simple_starproject_stream.f90	335	private
get_relative_path_here	function	simple_starproject_stream	main/star/simple_starproject_stream.f90	373	private
h_clust	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	692	private
starfile_deinit	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	88	private
starfile_init	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	66	private
starfile_set_clusters2D_table	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	344	private
starfile_set_micrographs_table	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	175	private
starfile_set_optics_group_table	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	136	private
starfile_set_optics_table	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	108	private
starfile_set_particles2D_subtable	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	286	private
starfile_set_particles2D_table	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	233	private
starfile_set_pick_diameters_table	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	158	private
starfile_write_table	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	97	private
stream_export_micrographs	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	384	private
stream_export_optics	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	408	private
stream_export_particles_2D	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	431	private
stream_export_pick_diameters	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	526	private
stream_export_picking_references	subroutine	simple_starproject_stream	main/star/simple_starproject_stream.f90	542	private
create_directory	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	85	private
delete_directory	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	90	private
force_openmp_threads	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	96	private
make_tiltinfo	function	simple_starproject_tester	main/star/simple_starproject_tester.f90	120	private
run_all_starproject_tests	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	36	public
setup_tmpdir	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	76	private
test_large_particle_table_export	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	523	private
test_optics_clustering_basic	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	687	private
test_particle_export_readback	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	138	private
test_relion_allocate_opticsgroups	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	379	private
test_relion_epu_tiltgroups	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	330	private
test_relion_find_movienames	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	309	private
test_relion_single_tiltgroup	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	357	private
test_relion_write_corrected_micrographs_star	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	401	private
test_relion_write_micrographs_star	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	437	private
test_relion_write_particles2D_star	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	476	private
test_relion_writer_micrographs	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	752	private
test_roundtrip_micrographs	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	784	private
test_star_export_micrographs	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	652	private
test_star_micrographs_readback	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	590	private
test_starfile_append_mode	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	225	private
test_starfile_basic_init	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	171	private
test_starfile_multiple_tables	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	265	private
test_starfile_write_and_readback	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	188	private
test_write_omem_parallel_stability	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	558	private
test_xml_tiltinfo	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	713	private
tmpfile	function	simple_starproject_tester	main/star/simple_starproject_tester.f90	103	private
write_textfile	subroutine	simple_starproject_tester	main/star/simple_starproject_tester.f90	110	private
center_boxes	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	175	public
enable_rlnflag	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	80	public
enable_splflag	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	94	public
enable_splflags	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	109	public
find_separators	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	299	public
get_rlnflagindex	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	140	public
h_clust	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	194	public
split_dataline	subroutine	simple_starproject_utils	main/star/simple_starproject_utils.f90	154	public
generic_kill	subroutine	simple_strategy2D	main/strategies/search/simple_strategy2D.f90	42	private
generic_new	subroutine	simple_strategy2D	main/strategies/search/simple_strategy2D.f90	24	private
generic_srch	subroutine	simple_strategy2D	main/strategies/search/simple_strategy2D.f90	35	private
clean_strategy2D	subroutine	simple_strategy2D_alloc	main/strategies/search/simple_strategy2D_alloc.f90	41	public
prep_strategy2D_batch	subroutine	simple_strategy2D_alloc	main/strategies/search/simple_strategy2D_alloc.f90	136	public
prep_strategy2D_glob	subroutine	simple_strategy2D_alloc	main/strategies/search/simple_strategy2D_alloc.f90	62	public
prep_strategy2D_thread	subroutine	simple_strategy2D_alloc	main/strategies/search/simple_strategy2D_alloc.f90	172	public
set_strategy2D_stoch_bound	subroutine	simple_strategy2D_alloc	main/strategies/search/simple_strategy2D_alloc.f90	54	public
kill_eval	subroutine	simple_strategy2D_eval	main/strategies/search/simple_strategy2D_eval.f90	45	private
new_eval	subroutine	simple_strategy2D_eval	main/strategies/search/simple_strategy2D_eval.f90	23	private
srch_eval	subroutine	simple_strategy2D_eval	main/strategies/search/simple_strategy2D_eval.f90	32	private
kill_greedy	subroutine	simple_strategy2D_greedy	main/strategies/search/simple_strategy2D_greedy.f90	74	private
new_greedy	subroutine	simple_strategy2D_greedy	main/strategies/search/simple_strategy2D_greedy.f90	26	private
srch_greedy	subroutine	simple_strategy2D_greedy	main/strategies/search/simple_strategy2D_greedy.f90	35	private
kill_greedy_smpl	subroutine	simple_strategy2D_greedy_smpl	main/strategies/search/simple_strategy2D_greedy_smpl.f90	127	private
new_greedy_smpl	subroutine	simple_strategy2D_greedy_smpl	main/strategies/search/simple_strategy2D_greedy_smpl.f90	26	private
srch_greedy_smpl	subroutine	simple_strategy2D_greedy_smpl	main/strategies/search/simple_strategy2D_greedy_smpl.f90	35	private
kill_inpl	subroutine	simple_strategy2D_inpl	main/strategies/search/simple_strategy2D_inpl.f90	56	private
new_inpl	subroutine	simple_strategy2D_inpl	main/strategies/search/simple_strategy2D_inpl.f90	23	private
srch_inpl	subroutine	simple_strategy2D_inpl	main/strategies/search/simple_strategy2D_inpl.f90	32	private
kill_inpl_smpl	subroutine	simple_strategy2D_inpl_smpl	main/strategies/search/simple_strategy2D_inpl_smpl.f90	114	private
new_inpl_smpl	subroutine	simple_strategy2D_inpl_smpl	main/strategies/search/simple_strategy2D_inpl_smpl.f90	25	private
srch_inpl_smpl	subroutine	simple_strategy2D_inpl_smpl	main/strategies/search/simple_strategy2D_inpl_smpl.f90	34	private
allocate_strategy_for_particle	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	339	private
build_batch_particles_local	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	332	private
cleanup_search_state	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	412	private
cluster2D_exec	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	87	public
compute_neigh_frac	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	282	private
display	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	535	private
ensure_even_odd_partition	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	304	private
finalize_restoration_and_convergence	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	439	private
init_ctrl	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	210	private
maybe_write_bench	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	490	private
prepare_alignment_references	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	321	private
prepare_batches	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	296	private
prepare_class_averages_and_restoration	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	312	private
report_stream_batch	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	553	private
reset_sgd_stream_dispatch_count	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	71	public
restore_class_averages_for_batch	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	404	private
sample_particles_for_update	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	271	private
set_b_p_ptrs2D	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	79	public
write_orientations	subroutine	simple_strategy2D_matcher	main/strategies/search/simple_strategy2D_matcher.f90	430	private
kill_prob	subroutine	simple_strategy2D_prob	main/strategies/search/simple_strategy2D_prob.f90	67	private
new_prob	subroutine	simple_strategy2D_prob	main/strategies/search/simple_strategy2D_prob.f90	26	private
srch_prob	subroutine	simple_strategy2D_prob	main/strategies/search/simple_strategy2D_prob.f90	35	private
kill_snhc	subroutine	simple_strategy2D_snhc	main/strategies/search/simple_strategy2D_snhc.f90	101	private
new_snhc	subroutine	simple_strategy2D_snhc	main/strategies/search/simple_strategy2D_snhc.f90	24	private
srch_snhc	subroutine	simple_strategy2D_snhc	main/strategies/search/simple_strategy2D_snhc.f90	33	private
kill_snhc_smpl	subroutine	simple_strategy2D_snhc_smpl	main/strategies/search/simple_strategy2D_snhc_smpl.f90	150	private
new_snhc_smpl	subroutine	simple_strategy2D_snhc_smpl	main/strategies/search/simple_strategy2D_snhc_smpl.f90	25	private
srch_snhc_smpl	subroutine	simple_strategy2D_snhc_smpl	main/strategies/search/simple_strategy2D_snhc_smpl.f90	34	private
kill_snhc_smpl_many	subroutine	simple_strategy2D_snhc_smpl_many	main/strategies/search/simple_strategy2D_snhc_smpl_many.f90	105	private
new_snhc_smpl_many	subroutine	simple_strategy2D_snhc_smpl_many	main/strategies/search/simple_strategy2D_snhc_smpl_many.f90	26	private
srch_snhc_smpl_many	subroutine	simple_strategy2D_snhc_smpl_many	main/strategies/search/simple_strategy2D_snhc_smpl_many.f90	35	private
assign_ori	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	377	private
inpl_srch	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	247	private
inpl_srch_first	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	204	private
inpl_srch_peaks	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	304	private
kill	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	459	private
new	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	68	private
prep4srch	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	124	private
store_solution	subroutine	simple_strategy2D_srch	main/strategies/search/simple_strategy2D_srch.f90	355	private
kill_tseries	subroutine	simple_strategy2D_tseries	main/strategies/search/simple_strategy2D_tseries.f90	97	private
new_tseries	subroutine	simple_strategy2D_tseries	main/strategies/search/simple_strategy2D_tseries.f90	26	private
per_ref_srch	subroutine	simple_strategy2D_tseries	main/strategies/search/simple_strategy2D_tseries.f90	77	private
srch_tseries	subroutine	simple_strategy2D_tseries	main/strategies/search/simple_strategy2D_tseries.f90	35	private
align_and_score_cavg_clusters	function	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	541	public
align_clusters2medoids	function	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	643	private
calc_cavg_offset	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	1002	public
calc_cavg_pairwise_algninfo	function	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	456	public
calc_cavg_sigstats_components	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	316	public
calc_cc_and_res_dmats	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	427	private
calc_cc_and_res_dmats_ref	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	468	private
calc_cluster_cavgs_dmat	function	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	495	public
calc_match_cavgs_dmat	function	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	518	public
calc_scores	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	576	private
calc_sigstats_dmats	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	304	private
calc_sigstats_dmats_ref	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	377	private
flag_non_junk_cavgs	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	228	public
id_junk	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	134	public
id_junk_and_prep_cavgs4clust	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	46	public
identify_good_bad_clusters	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	630	private
kill_cavg_sigstats_matrices	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	367	private
match_imgs	function	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	839	private
match_imgs2ref	function	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	728	private
prep_cavgs4clust	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	152	public
rank_clusters	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	611	private
rtsq_imgs	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	980	private
test_strategy2D_utils	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	1041	public
write_aligned_cavgs	subroutine	simple_strategy2D_utils	main/strategies/search/simple_strategy2D_utils.f90	710	public
generic_kill	subroutine	simple_strategy3D	main/strategies/search/simple_strategy3D.f90	48	private
generic_new	subroutine	simple_strategy3D	main/strategies/search/simple_strategy3D.f90	24	private
generic_oris_assign	subroutine	simple_strategy3D	main/strategies/search/simple_strategy3D.f90	43	private
generic_srch	subroutine	simple_strategy3D	main/strategies/search/simple_strategy3D.f90	35	private
clean_strategy3D	subroutine	simple_strategy3D_alloc	main/strategies/search/simple_strategy3D_alloc.f90	110	public
prep_strategy3D	subroutine	simple_strategy3D_alloc	main/strategies/search/simple_strategy3D_alloc.f90	33	public
prep_strategy3D_thread	subroutine	simple_strategy3D_alloc	main/strategies/search/simple_strategy3D_alloc.f90	98	public
kill_eval	subroutine	simple_strategy3D_eval	main/strategies/search/simple_strategy3D_eval.f90	53	private
new_eval	subroutine	simple_strategy3D_eval	main/strategies/search/simple_strategy3D_eval.f90	24	private
oris_assign_eval	subroutine	simple_strategy3D_eval	main/strategies/search/simple_strategy3D_eval.f90	48	private
srch_eval	subroutine	simple_strategy3D_eval	main/strategies/search/simple_strategy3D_eval.f90	34	private
kill_greedy	subroutine	simple_strategy3D_greedy	main/strategies/search/simple_strategy3D_greedy.f90	79	private
new_greedy	subroutine	simple_strategy3D_greedy	main/strategies/search/simple_strategy3D_greedy.f90	26	private
oris_assign_greedy	subroutine	simple_strategy3D_greedy	main/strategies/search/simple_strategy3D_greedy.f90	74	private
srch_greedy	subroutine	simple_strategy3D_greedy	main/strategies/search/simple_strategy3D_greedy.f90	36	private
kill_greedy_inpl	subroutine	simple_strategy3D_greedy_inpl	main/strategies/search/simple_strategy3D_greedy_inpl.f90	64	private
new_greedy_inpl	subroutine	simple_strategy3D_greedy_inpl	main/strategies/search/simple_strategy3D_greedy_inpl.f90	26	private
oris_assign_greedy_inpl	subroutine	simple_strategy3D_greedy_inpl	main/strategies/search/simple_strategy3D_greedy_inpl.f90	59	private
srch_greedy_inpl	subroutine	simple_strategy3D_greedy_inpl	main/strategies/search/simple_strategy3D_greedy_inpl.f90	36	private
kill_greedy_smpl	subroutine	simple_strategy3D_greedy_smpl	main/strategies/search/simple_strategy3D_greedy_smpl.f90	99	private
new_greedy_smpl	subroutine	simple_strategy3D_greedy_smpl	main/strategies/search/simple_strategy3D_greedy_smpl.f90	27	private
oris_assign_greedy_smpl	subroutine	simple_strategy3D_greedy_smpl	main/strategies/search/simple_strategy3D_greedy_smpl.f90	94	private
srch_greedy_smpl	subroutine	simple_strategy3D_greedy_smpl	main/strategies/search/simple_strategy3D_greedy_smpl.f90	37	private
kill_greedy_sub	subroutine	simple_strategy3D_greedy_sub	main/strategies/search/simple_strategy3D_greedy_sub.f90	151	private
new_greedy_sub	subroutine	simple_strategy3D_greedy_sub	main/strategies/search/simple_strategy3D_greedy_sub.f90	27	private
oris_assign_greedy_sub	subroutine	simple_strategy3D_greedy_sub	main/strategies/search/simple_strategy3D_greedy_sub.f90	146	private
srch_greedy_sub	subroutine	simple_strategy3D_greedy_sub	main/strategies/search/simple_strategy3D_greedy_sub.f90	37	private
build_batch_particles_local	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	318	private
choose_and_run_strategy	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	325	private
ensure_even_odd_partition	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	269	private
init_ctrl	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	253	private
maybe_write_orientations	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	382	private
prepare_particles_batches	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	297	private
prepare_refs_sigmas_and_pftc	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	305	private
print_flags	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	405	private
refine3D_exec	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	49	public
sample_particles_for_update	subroutine	simple_strategy3D_matcher	main/strategies/search/simple_strategy3D_matcher.f90	277	private
assign_state_fixed	subroutine	simple_strategy3D_prob	main/strategies/search/simple_strategy3D_prob.f90	83	private
kill_prob	subroutine	simple_strategy3D_prob	main/strategies/search/simple_strategy3D_prob.f90	107	private
new_prob	subroutine	simple_strategy3D_prob	main/strategies/search/simple_strategy3D_prob.f90	27	private
oris_assign_prob	subroutine	simple_strategy3D_prob	main/strategies/search/simple_strategy3D_prob.f90	103	private
srch_prob	subroutine	simple_strategy3D_prob	main/strategies/search/simple_strategy3D_prob.f90	37	private
kill_shc	subroutine	simple_strategy3D_shc	main/strategies/search/simple_strategy3D_shc.f90	86	private
new_shc	subroutine	simple_strategy3D_shc	main/strategies/search/simple_strategy3D_shc.f90	26	private
oris_assign_shc	subroutine	simple_strategy3D_shc	main/strategies/search/simple_strategy3D_shc.f90	81	private
srch_shc	subroutine	simple_strategy3D_shc	main/strategies/search/simple_strategy3D_shc.f90	36	private
kill_shc_smpl	subroutine	simple_strategy3D_shc_smpl	main/strategies/search/simple_strategy3D_shc_smpl.f90	105	private
new_shc_smpl	subroutine	simple_strategy3D_shc_smpl	main/strategies/search/simple_strategy3D_shc_smpl.f90	27	private
oris_assign_shc_smpl	subroutine	simple_strategy3D_shc_smpl	main/strategies/search/simple_strategy3D_shc_smpl.f90	100	private
srch_shc_smpl	subroutine	simple_strategy3D_shc_smpl	main/strategies/search/simple_strategy3D_shc_smpl.f90	37	private
kill_snhc_smpl	subroutine	simple_strategy3D_snhc_smpl	main/strategies/search/simple_strategy3D_snhc_smpl.f90	126	private
new_snhc_smpl	subroutine	simple_strategy3D_snhc_smpl	main/strategies/search/simple_strategy3D_snhc_smpl.f90	29	private
oris_assign_snhc_smpl	subroutine	simple_strategy3D_snhc_smpl	main/strategies/search/simple_strategy3D_snhc_smpl.f90	121	private
srch_snhc_smpl	subroutine	simple_strategy3D_snhc_smpl	main/strategies/search/simple_strategy3D_snhc_smpl.f90	39	private
inpl_srch	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	215	private
inpl_srch_first	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	196	private
inpl_srch_peaks	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	241	private
kill	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	278	private
new	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	73	private
prep4prob	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	121	private
prep4srch	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	143	private
store_solution	subroutine	simple_strategy3D_srch	main/strategies/search/simple_strategy3D_srch.f90	263	private
assign_ori	subroutine	simple_strategy3D_utils	main/strategies/search/simple_strategy3D_utils.f90	14	public
extract_peak_ori	subroutine	simple_strategy3D_utils	main/strategies/search/simple_strategy3D_utils.f90	109	public
extract_peak_oris	subroutine	simple_strategy3D_utils	main/strategies/search/simple_strategy3D_utils.f90	122	public
analyze_first_available_chunk	subroutine	simple_stream_abinitio2D_chunks	main/stream/simple_stream_abinitio2D_chunks.f90	140	public
exec_stream_abinitio2D_chunks	subroutine	simple_stream_abinitio2D_chunks	main/stream/simple_stream_abinitio2D_chunks.f90	31	public
flag_converged_chunks	subroutine	simple_stream_abinitio2D_chunks	main/stream/simple_stream_abinitio2D_chunks.f90	157	public
generate_chunk_projects	subroutine	simple_stream_abinitio2D_chunks	main/stream/simple_stream_abinitio2D_chunks.f90	168	public
init_one_chunk	subroutine	simple_stream_abinitio2D_chunks	main/stream/simple_stream_abinitio2D_chunks.f90	129	public
analyze2D	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	190	private
assign	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	142	private
average_into	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	326	private
calc_sigma2	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	249	private
copy	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	121	private
debug_print	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	64	private
display_iter	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	443	private
gen_final_cavgs	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	380	private
generate	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	148	private
get_projfile_fname	function	simple_stream_chunk	main/stream/simple_stream_chunk.f90	183	private
init_chunk	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	73	private
is_available	function	simple_stream_chunk	main/stream/simple_stream_chunk.f90	171	private
kill	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	502	private
print_info	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	491	private
read	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	302	private
remove_folder	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	412	private
split_sigmas_into	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	352	private
terminate_chunk	subroutine	simple_stream_chunk	main/stream/simple_stream_chunk.f90	421	private
to_analyze2D	function	simple_stream_chunk	main/stream/simple_stream_chunk.f90	177	private
analyze2D_new_chunks	subroutine	simple_stream_chunk2D_utils	main/stream/simple_stream_chunk2D_utils.f90	141	public
init_chunk_clustering	subroutine	simple_stream_chunk2D_utils	main/stream/simple_stream_chunk2D_utils.f90	33	public
memoize_chunks	subroutine	simple_stream_chunk2D_utils	main/stream/simple_stream_chunk2D_utils.f90	222	public
set_chunk_dimensions	subroutine	simple_stream_chunk2D_utils	main/stream/simple_stream_chunk2D_utils.f90	277	private
update_chunks	subroutine	simple_stream_chunk2D_utils	main/stream/simple_stream_chunk2D_utils.f90	295	public
apply_snapshot_selection	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	44	private
cleanup_root_folder	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	91	public
consolidate_sigmas	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	123	public
debug_print	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	160	private
get_latest_optics_map	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	389	private
get_latest_optics_map	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	715	private
rank_cavgs	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	181	private
rescale_cavgs	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	195	private
rescale_refs	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	738	private
set_dimensions	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	236	private
set_resolution_limits	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	258	private
set_snapshot_time	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	702	private
setup_downscaling	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	296	public
terminate_chunks	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	318	public
terminate_stream2D	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	327	public
tidy_2Dstream_iter	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	418	public
update_user_params2D	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	433	public
write_project_stream2D	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	562	public
write_raw_project	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	369	private
write_repick_refs	subroutine	simple_stream_cluster2D_utils	main/stream/simple_stream_cluster2D_utils.f90	754	public
add_to_json_1	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	379	private
add_to_json_2	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	386	private
add_to_json_3	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	393	private
add_to_json_4	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	399	private
add_to_json_5	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	405	private
background_heartbeat	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	150	private
create	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	58	private
curl_request	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	222	private
destroy_arg	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	340	private
evaluate_checksum	function	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	284	private
get_json_arg_1	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	420	private
get_json_arg_2	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	428	private
get_json_arg_3	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	436	private
get_json_arg_4	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	444	private
get_json_arg_5	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	452	private
join_background_heartbeat	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	199	private
remove_from_json_if_present	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	412	private
send_heartbeat	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	111	private
send_jobstats	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	124	private
term	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	85	private
update_json_1	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	348	private
update_json_2	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	355	private
update_json_3	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	363	private
update_json_4	subroutine	simple_stream_communicator	utils/comm/simple_stream_communicator.f90	371	private
append_pending	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	924	private
close_child_pipe_fds	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	146	private
close_fd_silent	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	176	private
close_pipe_except_fd	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	163	private
exec_stream_p00_master	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	185	private
init_cline_assign_optics	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1052	private
init_cline_opening2D	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1071	private
init_cline_particle_sieving	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1125	private
init_cline_pool2D	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1156	private
init_cline_preprocess	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1008	private
init_cline_reference_picking	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1097	private
init_ipc_pipe	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1186	private
init_metadata_assign_optics	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1065	private
init_metadata_opening2D	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1086	private
init_metadata_particle_sieving	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1150	private
init_metadata_pool2D	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1178	private
init_metadata_preprocess	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1027	private
init_metadata_reference_picking	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1119	private
kill_ipc_pipe	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1203	private
log_master_memory_state	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	567	private
metadata_listener	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	628	private
safe_destroy_json_ptr	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	561	private
send_framed_to_pipe	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1229	private
send_update_to_stage_pipes	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	1219	private
sigint_handler	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	616	private
sigterm_handler	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	556	private
trim_pending_capacity	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	985	private
try_extract_framed_message	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	949	private
try_read_from_fd	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	904	private
xassign_optics	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	106	private
xinitial_analysis	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	114	private
xparticle_sieving	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	130	private
xpool2D	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	138	private
xpreprocess	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	98	private
xreference_picking	subroutine	simple_stream_p00_master	main/stream/simple_stream_p00_master.f90	122	private
auto_detect_gain_flip	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	554	private
create_movies_set_project	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	923	private
exec_stream_p01_preprocess	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	47	private
generate_gain_from_movies	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	657	private
import_previous_projects	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	978	private
mics_window_stats	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	747	private
send_to_preprocess_in_pipe	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	1054	private
set_stat_thresholds	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	757	private
sigterm_handler	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	1049	private
test_stat_thresholds	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	774	private
update_projects_list	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	835	private
write_mic_star_and_field	subroutine	simple_stream_p01_preprocess_new	main/stream/simple_stream_p01_preprocess_new.f90	815	private
exec_stream_p02_assign_optics	subroutine	simple_stream_p02_assign_optics_new	main/stream/simple_stream_p02_assign_optics_new.f90	38	private
send_to_assign_optics_in_pipe	subroutine	simple_stream_p02_assign_optics_new	main/stream/simple_stream_p02_assign_optics_new.f90	224	private
sigterm_handler	subroutine	simple_stream_p02_assign_optics_new	main/stream/simple_stream_p02_assign_optics_new.f90	220	private
wait_for_stream_folder	subroutine	simple_stream_p02_assign_optics_new	main/stream/simple_stream_p02_assign_optics_new.f90	203	private
balance_classes	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	904	private
cleanup_previous	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	338	private
duplicate_balanced_stack	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1044	private
exec_stream_p03_initial_analysis	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	76	private
micimporter	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	696	private
reestimate_box_size_from_selected_cavgs	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1085	private
restart_cleanup_allocatables	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	362	private
run_abinitio2D	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	451	private
run_abinitio3D_and_reproject	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	574	private
run_cavg_quality_selection	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	764	private
run_cavg_size_selection	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	832	private
run_cls_split	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	519	private
run_extract	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	367	private
run_make_cavgs	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	546	private
run_reextract	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	423	private
run_sieve_ptcls	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	488	private
send_available_cavgs2D	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1285	private
send_cavg2D_meta	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1256	private
send_meta	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1172	private
send_meta2D	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1191	private
send_micrograph_meta	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1215	private
send_pickref_meta	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1319	private
send_selected_pickrefs	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1345	private
send_to_initial_analysis_in_pipe	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1384	private
sigterm_handler	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1379	private
update_os_out_stk	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1066	private
write_quality_stack	subroutine	simple_stream_p03_initial_analysis	main/stream/simple_stream_p03_initial_analysis.f90	1153	private
create_individual_project	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	595	private
exec_stream_pick_extract	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	53	private
import_previous_mics	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	683	private
send_cavg2D_meta	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	831	private
send_meta	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	774	private
send_micrograph_meta	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	790	private
send_pickrefs	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	854	private
send_to_refpick_in_pipe	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	870	private
sigterm_handler	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	924	private
update_projects_list	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	522	private
validate_ptcl2D_star_inputs	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	479	private
write_micrographs_starfile	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	375	private
write_project	subroutine	simple_stream_p04_refpick_extract_new	main/stream/simple_stream_p04_refpick_extract_new.f90	392	private
exec_stream_p05_sieve_cavgs	subroutine	simple_stream_p05_sieve_cavgs_new	main/stream/simple_stream_p05_sieve_cavgs_new.f90	77	private
send_cavg2D_meta	subroutine	simple_stream_p05_sieve_cavgs_new	main/stream/simple_stream_p05_sieve_cavgs_new.f90	246	private
send_cavgs2D_batch	subroutine	simple_stream_p05_sieve_cavgs_new	main/stream/simple_stream_p05_sieve_cavgs_new.f90	282	private
send_meta	subroutine	simple_stream_p05_sieve_cavgs_new	main/stream/simple_stream_p05_sieve_cavgs_new.f90	224	private
send_to_sieve_cavgs_in_pipe	subroutine	simple_stream_p05_sieve_cavgs_new	main/stream/simple_stream_p05_sieve_cavgs_new.f90	300	private
sigterm_handler	subroutine	simple_stream_p05_sieve_cavgs_new	main/stream/simple_stream_p05_sieve_cavgs_new.f90	354	private
cleanup4restart	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	507	private
exec_stream_p06_pool2D	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	63	private
import_sets_into_pool	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	339	private
send_cavg2D_meta	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	563	private
send_cavgs2D	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	590	private
send_meta	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	533	private
send_meta_snapshot2D	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	551	private
send_to_pool2D_in_pipe	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	612	private
sigterm_handler	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	728	private
unpause_pool	subroutine	simple_stream_p06_pool2D_new	main/stream/simple_stream_p06_pool2D_new.f90	332	private
biased_stack_sampling	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	423	private
generate_pool_jpeg	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	905	private
generate_pool_stats	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	978	public
get_pool_ptr	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	506	public
init_pool_clustering	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	60	public
iterate_pool	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	193	public
set_iteration_time	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	1019	private
set_lpthres_type	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	527	public
set_pool_dimensions	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	532	private
set_pool_resolution_limits	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	550	public
uniform_stack_sampling	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	400	private
update_match_class_states	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	590	public
update_match_class_states_in_pool	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	618	private
update_mskdiam	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	576	public
update_pool	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	646	public
update_pool_aln_params	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	761	public
update_pool_dims	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	794	private
update_pool_for_gui	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	875	private
update_pool_status	subroutine	simple_stream_pool2D_utils	main/stream/simple_stream_pool2D_utils.f90	892	public
create_stream_project	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	29	public
get_latest_optics_map_id	function	simple_stream_utils	main/stream/simple_stream_utils.f90	598	public
import_new_projects	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	56	public
init_stream_qenv	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	42	public
process_selected_refs	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	363	public
process_selected_refs_2	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	471	public
stream_datestr	function	simple_stream_utils	main/stream/simple_stream_utils.f90	349	public
terminate_stream	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	21	public
update_user_params	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	105	public
wait_for_folder	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	306	public
wait_for_folder2	subroutine	simple_stream_utils	main/stream/simple_stream_utils.f90	333	public
run_all_string_tests	subroutine	simple_string_tester	utils/simple_string_tester.f90	12	public
test_append_operator	subroutine	simple_string_tester	utils/simple_string_tester.f90	88	private
test_assign_and_ctor	subroutine	simple_string_tester	utils/simple_string_tester.f90	59	private
test_default_and_kill	subroutine	simple_string_tester	utils/simple_string_tester.f90	40	private
test_ends_with	subroutine	simple_string_tester	utils/simple_string_tester.f90	209	private
test_equality_operators	subroutine	simple_string_tester	utils/simple_string_tester.f90	274	private
test_has_substr	subroutine	simple_string_tester	utils/simple_string_tester.f90	178	private
test_is_blank_and_is_allocated	subroutine	simple_string_tester	utils/simple_string_tester.f90	259	private
test_numeric_conversion	subroutine	simple_string_tester	utils/simple_string_tester.f90	144	private
test_readfile	subroutine	simple_string_tester	utils/simple_string_tester.f90	464	private
test_readline_empty_line	subroutine	simple_string_tester	utils/simple_string_tester.f90	365	private
test_readline_eof_behavior	subroutine	simple_string_tester	utils/simple_string_tester.f90	427	private
test_readline_long_line	subroutine	simple_string_tester	utils/simple_string_tester.f90	401	private
test_readline_multiple_lines	subroutine	simple_string_tester	utils/simple_string_tester.f90	326	private
test_readline_writeline	subroutine	simple_string_tester	utils/simple_string_tester.f90	306	private
test_strlen	subroutine	simple_string_tester	utils/simple_string_tester.f90	107	private
test_substr_ind	subroutine	simple_string_tester	utils/simple_string_tester.f90	220	private
test_substr_remove	subroutine	simple_string_tester	utils/simple_string_tester.f90	190	private
test_substr_replace	subroutine	simple_string_tester	utils/simple_string_tester.f90	240	private
test_to_char	subroutine	simple_string_tester	utils/simple_string_tester.f90	117	private
test_to_fnv1a_hash64	subroutine	simple_string_tester	utils/simple_string_tester.f90	134	private
test_writeline_unallocated	subroutine	simple_string_tester	utils/simple_string_tester.f90	451	private
eval_point_groups	subroutine	simple_symanalyzer	main/simple_symanalyzer.f90	264	private
find_symaxis	subroutine	simple_symanalyzer	main/simple_symanalyzer.f90	336	private
print_subgroups	subroutine	simple_symanalyzer	main/simple_symanalyzer.f90	101	public
symaverage	subroutine	simple_symanalyzer	main/simple_symanalyzer.f90	345	private
symmetrize_map	subroutine	simple_symanalyzer	main/simple_symanalyzer.f90	31	public
symmetry_tester	subroutine	simple_symanalyzer	main/simple_symanalyzer.f90	139	public
del_file	subroutine	simple_syslib	fileio/simple_syslib.f90	872	public
exec_cmdline	subroutine	simple_syslib	fileio/simple_syslib.f90	215	public
find_next_int_dir_prefix	function	simple_syslib	fileio/simple_syslib.f90	690	public
fsync	function	simple_syslib	fileio/simple_syslib.f90	57	public
get_absolute_pathname	function	simple_syslib	fileio/simple_syslib.f90	125	public
get_current_rss_bytes	function	simple_syslib	fileio/simple_syslib.f90	152	public
get_peak_rss_bytes	function	simple_syslib	fileio/simple_syslib.f90	146	public
get_sysinfo	function	simple_syslib	fileio/simple_syslib.f90	135	public
isdir	function	simple_syslib	fileio/simple_syslib.f90	76	public
list_dirs	function	simple_syslib	fileio/simple_syslib.f90	99	public
makedir	function	simple_syslib	fileio/simple_syslib.f90	83	public
memory_monitor_report_c	function	simple_syslib	fileio/simple_syslib.f90	167	public
memory_monitor_start_c	function	simple_syslib	fileio/simple_syslib.f90	158	public
memory_monitor_stop_c	function	simple_syslib	fileio/simple_syslib.f90	178	public
mkdir	function	simple_syslib	fileio/simple_syslib.f90	38	public
print_slurm_env	subroutine	simple_syslib	fileio/simple_syslib.f90	942	public
raise_sys_error	subroutine	simple_syslib	fileio/simple_syslib.f90	255	public
redirect_stdout_stderr	subroutine	simple_syslib	fileio/simple_syslib.f90	275	public
regexp_match	function	simple_syslib	fileio/simple_syslib.f90	201	public
removedir	function	simple_syslib	fileio/simple_syslib.f90	90	public
restore_stdout_stderr	subroutine	simple_syslib	fileio/simple_syslib.f90	297	public
rmdir	function	simple_syslib	fileio/simple_syslib.f90	17	public
safe_flush	subroutine	simple_syslib	fileio/simple_syslib.f90	306	public
simple_abspath	function	simple_syslib	fileio/simple_syslib.f90	899	public
simple_chdir	subroutine	simple_syslib	fileio/simple_syslib.f90	529	public
simple_chmod	function	simple_syslib	fileio/simple_syslib.f90	419	public
simple_file_stat	subroutine	simple_syslib	fileio/simple_syslib.f90	436	public
simple_getcwd	subroutine	simple_syslib	fileio/simple_syslib.f90	515	public
simple_getenv	function	simple_syslib	fileio/simple_syslib.f90	313	public
simple_list_dirs	function	simple_syslib	fileio/simple_syslib.f90	731	public
simple_list_files	subroutine	simple_syslib	fileio/simple_syslib.f90	763	public
simple_list_files_regexp	subroutine	simple_syslib	fileio/simple_syslib.f90	810	public
simple_mkdir	subroutine	simple_syslib	fileio/simple_syslib.f90	560	public
simple_redirect_output_c	function	simple_syslib	fileio/simple_syslib.f90	187	public
simple_rename	subroutine	simple_syslib	fileio/simple_syslib.f90	383	public
simple_restore_output_c	function	simple_syslib	fileio/simple_syslib.f90	195	public
simple_rmdir	subroutine	simple_syslib	fileio/simple_syslib.f90	608	public
simple_rmfile	subroutine	simple_syslib	fileio/simple_syslib.f90	646	public
simple_touch	subroutine	simple_syslib	fileio/simple_syslib.f90	335	public
sscanf	function	simple_syslib	fileio/simple_syslib.f90	64	public
symlink	function	simple_syslib	fileio/simple_syslib.f90	48	public
syslib_c2fortran_string	subroutine	simple_syslib	fileio/simple_syslib.f90	681	public
syslib_symlink	subroutine	simple_syslib	fileio/simple_syslib.f90	352	public
touch	function	simple_syslib	fileio/simple_syslib.f90	117	public
unlink	function	simple_syslib	fileio/simple_syslib.f90	26	public
wait_pid	function	simple_syslib	fileio/simple_syslib.f90	110	public
run_all_syslib_tests	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	15	public
setup_test_env	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	45	private
teardown_test_env	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	61	private
test_exec_cmdline	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	317	private
test_find_next_int_dir_prefix	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	384	private
test_get_current_rss_bytes	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	357	private
test_get_peak_rss_bytes	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	345	private
test_get_process_id	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	338	private
test_getenv_wrapper	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	303	private
test_is_file_open	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	188	private
test_is_io_and_is_open	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	171	private
test_print_slurm_env_smoke	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	403	private
test_simple_abspath	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	288	private
test_simple_file_stat	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	154	private
test_simple_getcwd_and_chdir	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	204	private
test_simple_list_dirs	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	224	private
test_simple_list_files	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	245	private
test_simple_list_files_regexp	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	265	private
test_simple_mkdir_dir_exists_rmdir	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	87	private
test_simple_rename_and_del_file	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	102	private
test_simple_rmfile	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	119	private
test_simple_touch_and_file_exists	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	74	private
test_syslib_c2fortran_string	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	372	private
test_syslib_symlink	subroutine	simple_syslib_tester	fileio/simple_syslib_tester.f90	135	private
box_filter_1d	subroutine	simple_tent_smooth	utils/filter/simple_tent_smooth.f90	113	public
box_filter_x	subroutine	simple_tent_smooth	utils/filter/simple_tent_smooth.f90	51	public
box_filter_y	subroutine	simple_tent_smooth	utils/filter/simple_tent_smooth.f90	68	public
box_filter_z	subroutine	simple_tent_smooth	utils/filter/simple_tent_smooth.f90	87	public
tent_smooth_3d	subroutine	simple_tent_smooth	utils/filter/simple_tent_smooth.f90	24	public
exec_test_class_commander	subroutine	simple_test_exec_class	main/exec/simple_test_exec_class.f90	16	public
exec_test_fft_commander	subroutine	simple_test_exec_fft	main/exec/simple_test_exec_fft.f90	25	public
exec_test_geometry_commander	subroutine	simple_test_exec_geometry	main/exec/simple_test_exec_geometry.f90	21	public
exec_test_highlevel_commander	subroutine	simple_test_exec_highlevel	main/exec/simple_test_exec_highlevel.f90	22	public
exec_test_io_commander	subroutine	simple_test_exec_io	main/exec/simple_test_exec_io.f90	26	public
exec_test_masks_commander	subroutine	simple_test_exec_masks	main/exec/simple_test_exec_masks.f90	25	public
exec_test_network_commander	subroutine	simple_test_exec_network	main/exec/simple_test_exec_network.f90	19	public
exec_test_numerics_commander	subroutine	simple_test_exec_numerics	main/exec/simple_test_exec_numerics.f90	18	public
exec_test_optimize_commander	subroutine	simple_test_exec_optimize	main/exec/simple_test_exec_optimize.f90	20	public
exec_test_parallel_commander	subroutine	simple_test_exec_parallel	main/exec/simple_test_exec_parallel.f90	18	public
exec_test_single_commander	subroutine	simple_test_exec_single	main/exec/simple_test_exec_single.f90	17	public
exec_test_stats_commander	subroutine	simple_test_exec_stats	main/exec/simple_test_exec_stats.f90	26	public
exec_test_utils_commander	subroutine	simple_test_exec_utils	main/exec/simple_test_exec_utils.f90	31	public
construct_test_class_programs	subroutine	simple_test_ui_class	main/ui/simple_test/simple_test_ui_class.f90	13	public
new_strategy2D	subroutine	simple_test_ui_class	main/ui/simple_test/simple_test_ui_class.f90	20	public
new_ui_hash_test	subroutine	simple_test_ui_class	main/ui/simple_test/simple_test_ui_class.f90	48	public
new_units	subroutine	simple_test_ui_class	main/ui/simple_test/simple_test_ui_class.f90	76	public
construct_test_fft_programs	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	18	public
new_corrs2weights_test	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	30	public
new_eval_polarftcc	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	42	public
new_ft_expanded	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	70	public
new_gencorrs_fft	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	98	public
new_order_corr	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	127	public
new_phasecorr	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	155	public
new_rank_weights	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	183	public
new_rotate_ref	subroutine	simple_test_ui_fft	main/ui/simple_test/simple_test_ui_fft.f90	211	public
construct_test_geometry_programs	subroutine	simple_test_ui_geometry	main/ui/simple_test/simple_test_ui_geometry.f90	16	public
new_angres	subroutine	simple_test_ui_geometry	main/ui/simple_test/simple_test_ui_geometry.f90	26	public
new_ori_test	subroutine	simple_test_ui_geometry	main/ui/simple_test/simple_test_ui_geometry.f90	54	public
new_oris_test	subroutine	simple_test_ui_geometry	main/ui/simple_test/simple_test_ui_geometry.f90	82	public
new_sym_test	subroutine	simple_test_ui_geometry	main/ui/simple_test/simple_test_ui_geometry.f90	110	public
new_uniform_euler	subroutine	simple_test_ui_geometry	main/ui/simple_test/simple_test_ui_geometry.f90	138	public
new_uniform_rot	subroutine	simple_test_ui_geometry	main/ui/simple_test/simple_test_ui_geometry.f90	166	public
construct_test_highlevel_programs	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	17	public
new_mini_stream	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	41	public
new_pcg_recon	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	155	public
new_ptcls_ppca_subproject_distr	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	138	public
new_reproject	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	69	public
new_simulate_particles	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	82	public
new_simulated_workflow	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	95	public
new_subproject_distr	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	125	public
print_test_highlevel_programs	subroutine	simple_test_ui_highlevel	main/ui/simple_test/simple_test_ui_highlevel.f90	28	public
construct_test_io_programs	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	19	public
new_imgfile	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	47	public
new_inside_write	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	75	public
new_io	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	103	public
new_io_parallel	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	131	public
new_mrc2jpeg	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	159	public
new_mrc_validate	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	187	public
new_stack_io	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	218	public
new_star_export	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	246	public
new_starfile_test	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	274	public
print_test_io_programs	subroutine	simple_test_ui_io	main/ui/simple_test/simple_test_ui_io.f90	32	public
construct_test_masks_programs	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	18	public
new_bounds_from_mask3D_test	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	30	public
new_graphene_mask	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	58	public
new_image_bin	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	86	public
new_mask	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	114	public
new_msk_routines	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	142	public
new_nano_mask	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	170	public
new_otsu_test	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	199	public
new_ptcl_center	subroutine	simple_test_ui_masks	main/ui/simple_test/simple_test_ui_masks.f90	227	public
construct_test_network_programs	subroutine	simple_test_ui_network	main/ui/simple_test/simple_test_ui_network.f90	14	public
new_socket_client	subroutine	simple_test_ui_network	main/ui/simple_test/simple_test_ui_network.f90	22	public
new_socket_comm_distr	subroutine	simple_test_ui_network	main/ui/simple_test/simple_test_ui_network.f90	50	public
new_socket_io	subroutine	simple_test_ui_network	main/ui/simple_test/simple_test_ui_network.f90	78	public
new_socket_server	subroutine	simple_test_ui_network	main/ui/simple_test/simple_test_ui_network.f90	106	public
construct_test_numerics_programs	subroutine	simple_test_ui_numerics	main/ui/simple_test/simple_test_ui_numerics.f90	14	public
new_eigh_test	subroutine	simple_test_ui_numerics	main/ui/simple_test/simple_test_ui_numerics.f90	22	public
new_kbinterpol_fast	subroutine	simple_test_ui_numerics	main/ui/simple_test/simple_test_ui_numerics.f90	50	public
new_maxnloc_test	subroutine	simple_test_ui_numerics	main/ui/simple_test/simple_test_ui_numerics.f90	78	public
new_neigh	subroutine	simple_test_ui_numerics	main/ui/simple_test/simple_test_ui_numerics.f90	106	public
construct_test_optimize_programs	subroutine	simple_test_ui_optimize	main/ui/simple_test/simple_test_ui_optimize.f90	15	public
new_lbfgsb	subroutine	simple_test_ui_optimize	main/ui/simple_test/simple_test_ui_optimize.f90	24	public
new_lbfgsb_cosine	subroutine	simple_test_ui_optimize	main/ui/simple_test/simple_test_ui_optimize.f90	52	public
new_lplims	subroutine	simple_test_ui_optimize	main/ui/simple_test/simple_test_ui_optimize.f90	80	public
new_lpstages_test	subroutine	simple_test_ui_optimize	main/ui/simple_test/simple_test_ui_optimize.f90	108	public
new_opt_lp	subroutine	simple_test_ui_optimize	main/ui/simple_test/simple_test_ui_optimize.f90	136	public
construct_test_parallel_programs	subroutine	simple_test_ui_parallel	main/ui/simple_test/simple_test_ui_parallel.f90	14	public
new_coarrays	subroutine	simple_test_ui_parallel	main/ui/simple_test/simple_test_ui_parallel.f90	22	public
new_openacc	subroutine	simple_test_ui_parallel	main/ui/simple_test/simple_test_ui_parallel.f90	53	public
new_openmp	subroutine	simple_test_ui_parallel	main/ui/simple_test/simple_test_ui_parallel.f90	81	public
new_simd	subroutine	simple_test_ui_parallel	main/ui/simple_test/simple_test_ui_parallel.f90	109	public
construct_test_single_programs	subroutine	simple_test_ui_single	main/ui/simple_test/simple_test_ui_single.f90	14	public
new_atoms_stats	subroutine	simple_test_ui_single	main/ui/simple_test/simple_test_ui_single.f90	22	public
new_detect_atoms	subroutine	simple_test_ui_single	main/ui/simple_test/simple_test_ui_single.f90	52	public
new_simulate_nanoparticle	subroutine	simple_test_ui_single	main/ui/simple_test/simple_test_ui_single.f90	82	public
new_single_workflow	subroutine	simple_test_ui_single	main/ui/simple_test/simple_test_ui_single.f90	112	public
construct_test_stats_programs	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	19	public
new_class_sample_test	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	32	public
new_clustering	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	60	public
new_ctf_test	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	88	public
new_eo_diff	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	116	public
new_extr_frac	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	144	public
new_multinomal_test	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	172	public
new_pca_all	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	200	public
new_pca_imgvar	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	228	public
new_sp_project	subroutine	simple_test_ui_stats	main/ui/simple_test/simple_test_ui_stats.f90	256	public
construct_test_utils_programs	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	22	public
new_ansi_colors	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	38	public
new_binoris_io_test	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	94	public
new_binoris_test	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	66	public
new_cif2mrc	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	122	public
new_cif2pdb	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	150	public
new_cmdline	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	178	public
new_install	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	206	public
new_nice	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	234	public
new_pdb2mrc	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	262	public
new_peak_thres_fdr	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	318	public
new_serialize	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	290	public
new_stringmatch	subroutine	simple_test_ui_utils	main/ui/simple_test/simple_test_ui_utils.f90	331	public
assert_char	subroutine	simple_test_utils	utils/simple_test_utils.f90	44	public
assert_double	subroutine	simple_test_utils	utils/simple_test_utils.f90	68	public
assert_false	subroutine	simple_test_utils	utils/simple_test_utils.f90	90	public
assert_int	subroutine	simple_test_utils	utils/simple_test_utils.f90	24	public
assert_real	subroutine	simple_test_utils	utils/simple_test_utils.f90	34	public
assert_string_eq	subroutine	simple_test_utils	utils/simple_test_utils.f90	54	public
assert_true	subroutine	simple_test_utils	utils/simple_test_utils.f90	14	public
report_summary	subroutine	simple_test_utils	utils/simple_test_utils.f90	101	public
get_testfun	subroutine	simple_testfuns	utils/math/simple_testfuns.f90	26	public
testfun	function	simple_testfuns	utils/math/simple_testfuns.f90	15	public
testfun1	function	simple_testfuns	utils/math/simple_testfuns.f90	319	public
testfun10	function	simple_testfuns	utils/math/simple_testfuns.f90	474	public
testfun11	function	simple_testfuns	utils/math/simple_testfuns.f90	498	public
testfun12	function	simple_testfuns	utils/math/simple_testfuns.f90	520	public
testfun13	function	simple_testfuns	utils/math/simple_testfuns.f90	537	public
testfun14	function	simple_testfuns	utils/math/simple_testfuns.f90	557	public
testfun15	function	simple_testfuns	utils/math/simple_testfuns.f90	578	public
testfun16	function	simple_testfuns	utils/math/simple_testfuns.f90	594	public
testfun17	function	simple_testfuns	utils/math/simple_testfuns.f90	611	public
testfun18	function	simple_testfuns	utils/math/simple_testfuns.f90	644	public
testfun19	function	simple_testfuns	utils/math/simple_testfuns.f90	667	public
testfun2	function	simple_testfuns	utils/math/simple_testfuns.f90	337	public
testfun20	function	simple_testfuns	utils/math/simple_testfuns.f90	687	public
testfun21	function	simple_testfuns	utils/math/simple_testfuns.f90	700	public
testfun22	function	simple_testfuns	utils/math/simple_testfuns.f90	714	public
testfun23	function	simple_testfuns	utils/math/simple_testfuns.f90	727	public
testfun24	function	simple_testfuns	utils/math/simple_testfuns.f90	741	public
testfun25	function	simple_testfuns	utils/math/simple_testfuns.f90	752	public
testfun26	function	simple_testfuns	utils/math/simple_testfuns.f90	763	public
testfun27	function	simple_testfuns	utils/math/simple_testfuns.f90	784	public
testfun28	function	simple_testfuns	utils/math/simple_testfuns.f90	795	public
testfun29	function	simple_testfuns	utils/math/simple_testfuns.f90	808	public
testfun3	function	simple_testfuns	utils/math/simple_testfuns.f90	355	public
testfun30	function	simple_testfuns	utils/math/simple_testfuns.f90	820	public
testfun31	function	simple_testfuns	utils/math/simple_testfuns.f90	837	public
testfun32	function	simple_testfuns	utils/math/simple_testfuns.f90	849	public
testfun4	function	simple_testfuns	utils/math/simple_testfuns.f90	378	public
testfun5	function	simple_testfuns	utils/math/simple_testfuns.f90	394	public
testfun6	function	simple_testfuns	utils/math/simple_testfuns.f90	411	public
testfun7	function	simple_testfuns	utils/math/simple_testfuns.f90	429	public
testfun8	function	simple_testfuns	utils/math/simple_testfuns.f90	444	public
testfun9	function	simple_testfuns	utils/math/simple_testfuns.f90	459	public
TIFFAllocateStripBuffer	function	simple_tifflib	fileio/simple_tifflib.f90	182	public
TIFFClose	subroutine	simple_tifflib	fileio/simple_tifflib.f90	107	public
TIFFCurrentDirectory	function	simple_tifflib	fileio/simple_tifflib.f90	84	public
TIFFGetField	function	simple_tifflib	fileio/simple_tifflib.f90	13	public
TIFFGetVersion	function	simple_tifflib	fileio/simple_tifflib.f90	28	public
TIFFIsTiled	function	simple_tifflib	fileio/simple_tifflib.f90	61	public
TIFFLastDirectory	function	simple_tifflib	fileio/simple_tifflib.f90	55	public
TIFFMuteWarnings	subroutine	simple_tifflib	fileio/simple_tifflib.f90	193	public
TIFFNumberOfStrips	function	simple_tifflib	fileio/simple_tifflib.f90	69	public
TIFFOpen	function	simple_tifflib	fileio/simple_tifflib.f90	21	public
TIFFPrintInfo	subroutine	simple_tifflib	fileio/simple_tifflib.f90	188	public
TIFFReadDirectory	function	simple_tifflib	fileio/simple_tifflib.f90	101	public
TIFFReadEncodedStrip	function	simple_tifflib	fileio/simple_tifflib.f90	37	public
TIFFReadRawStrip	function	simple_tifflib	fileio/simple_tifflib.f90	46	public
TIFFSetDirectory	function	simple_tifflib	fileio/simple_tifflib.f90	92	public
TIFFStripSize	function	simple_tifflib	fileio/simple_tifflib.f90	77	public
TIFFUnMuteWarnings	subroutine	simple_tifflib	fileio/simple_tifflib.f90	196	public
TIFFfree	function	simple_tifflib	fileio/simple_tifflib.f90	175	public
TIFFmalloc	function	simple_tifflib	fileio/simple_tifflib.f90	169	public
cast_time_char	function	simple_timer	utils/simple_timer.f90	67	public
now	subroutine	simple_timer	utils/simple_timer.f90	144	public
reset_timer	subroutine	simple_timer	utils/simple_timer.f90	75	public
timer_loop_end	subroutine	simple_timer	utils/simple_timer.f90	184	public
timer_loop_start	subroutine	simple_timer	utils/simple_timer.f90	170	public
timer_profile_break	subroutine	simple_timer	utils/simple_timer.f90	373	public
timer_profile_report	subroutine	simple_timer	utils/simple_timer.f90	411	public
timer_profile_setup	subroutine	simple_timer	utils/simple_timer.f90	223	public
timer_profile_start	subroutine	simple_timer	utils/simple_timer.f90	353	public
tocprint	subroutine	simple_timer	utils/simple_timer.f90	126	public
now_omp	subroutine	simple_timer_omp	utils/simple_timer_omp.f90	65	public
reset_timer_omp	subroutine	simple_timer_omp	utils/simple_timer_omp.f90	17	public
kill_trajectory_chunk_plan	subroutine	simple_trajectory_chunker	main/nano/simple_trajectory_chunker.f90	418	private
make_boundary_bands	subroutine	simple_trajectory_chunker	main/nano/simple_trajectory_chunker.f90	245	private
make_trajectory_chunk_plan	subroutine	simple_trajectory_chunker	main/nano/simple_trajectory_chunker.f90	37	public
prepare_weighted_features	subroutine	simple_trajectory_chunker	main/nano/simple_trajectory_chunker.f90	215	private
select_trajectory_chunk_plan	subroutine	simple_trajectory_chunker	main/nano/simple_trajectory_chunker.f90	156	public
trajectory_chunks_to_parts	subroutine	simple_trajectory_chunker	main/nano/simple_trajectory_chunker.f90	389	public
write_trajectory_chunks_csv	subroutine	simple_trajectory_chunker	main/nano/simple_trajectory_chunker.f90	401	public
calc_3bands_mask	function	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	312	private
calc_peaks	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	138	public
init_graphene_subtr	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	25	public
interp_peak	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	215	private
kill_graphene_subtr	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	343	public
obscure_peak	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	286	private
range_convention	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	204	private
remove_lattice	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	255	private
remove_lattices	subroutine	simple_tseries_graphene_subtr	main/nano/simple_tseries_graphene_subtr.f90	236	public
get_prg_ptr	subroutine	simple_ui	main/ui/simple_ui.f90	57	public
get_test_prg_ptr	subroutine	simple_ui	main/ui/simple_ui.f90	144	public
list_simple_prgs_in_ui	subroutine	simple_ui	main/ui/simple_ui.f90	151	public
list_simple_test_prgs_in_ui	subroutine	simple_ui	main/ui/simple_ui.f90	155	public
list_single_prgs_in_ui	subroutine	simple_ui	main/ui/simple_ui.f90	163	public
list_stream_prgs_in_ui	subroutine	simple_ui	main/ui/simple_ui.f90	159	public
make_test_ui	subroutine	simple_ui	main/ui/simple_ui.f90	49	public
make_ui	subroutine	simple_ui	main/ui/simple_ui.f90	36	public
print_registered_programs	subroutine	simple_ui	main/ui/simple_ui.f90	167	private
print_stream_ui_json	subroutine	simple_ui	main/ui/simple_ui.f90	281	public
print_ui_json	subroutine	simple_ui	main/ui/simple_ui.f90	234	public
validate_category_metadata	subroutine	simple_ui	main/ui/simple_ui.f90	110	private
validate_input_list	subroutine	simple_ui	main/ui/simple_ui.f90	88	private
validate_ui_json	subroutine	simple_ui	main/ui/simple_ui.f90	492	public
validate_ui_presentation	subroutine	simple_ui	main/ui/simple_ui.f90	64	public
write_ui_json	subroutine	simple_ui	main/ui/simple_ui.f90	257	public
construct_abinitio3D_programs	subroutine	simple_ui_abinitio3D	main/ui/simple/simple_ui_abinitio3D.f90	14	public
new_abinitio3D	subroutine	simple_ui_abinitio3D	main/ui/simple/simple_ui_abinitio3D.f90	22	public
new_abinitio3D_cavgs	subroutine	simple_ui_abinitio3D	main/ui/simple/simple_ui_abinitio3D.f90	127	public
new_estimate_lpstages	subroutine	simple_ui_abinitio3D	main/ui/simple/simple_ui_abinitio3D.f90	186	public
new_noisevol	subroutine	simple_ui_abinitio3D	main/ui/simple/simple_ui_abinitio3D.f90	217	public
construct_cavgproc_programs	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	17	public
new_cluster_cavgs	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	28	public
new_cluster_cavgs_selection	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	127	public
new_cluster_stack	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	164	public
new_match_cavgs	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	203	public
new_match_stacks	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	244	public
new_model_cavgs_rejection	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	71	public
new_select_clusters	subroutine	simple_ui_cavgproc	main/ui/simple/simple_ui_cavgproc.f90	284	public
construct_cluster2D_programs	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	19	public
new_abinitio2D	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	31	public
new_abinitio2D_chunks	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	126	public
new_bootstrap_cavgs	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	223	public
new_make_cavgs	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	181	public
new_map_cavgs_selection	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	298	public
new_sample_classes	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	331	public
new_unbootstrap_cavgs	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	265	public
new_write_classes	subroutine	simple_ui_cluster2D	main/ui/simple/simple_ui_cluster2D.f90	373	public
construct_denoise_programs	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	19	public
new_cls_split	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	263	public
new_denoise_project	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	336	public
new_flex_analysis	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	406	public
new_icm2D	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	32	public
new_icm3D	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	67	public
new_map_params_from_den	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	388	public
new_ppca_denoise	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	103	public
new_ppca_denoise_classes	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	177	public
new_ppca_volvar	subroutine	simple_ui_denoise	main/ui/simple/simple_ui_denoise.f90	228	public
ui_choices	function	simple_ui_descriptor_types	main/ui/simple_ui_descriptor_types.f90	17	public
construct_dock_programs	subroutine	simple_ui_dock	main/ui/simple/simple_ui_dock.f90	13	public
new_dock_volpair	subroutine	simple_ui_dock	main/ui/simple/simple_ui_dock.f90	20	public
new_volanalyze	subroutine	simple_ui_dock	main/ui/simple/simple_ui_dock.f90	65	public
new_volcluster	subroutine	simple_ui_dock	main/ui/simple/simple_ui_dock.f90	105	public
construct_filter_programs	subroutine	simple_ui_filter	main/ui/simple/simple_ui_filter.f90	14	public
new_filter	subroutine	simple_ui_filter	main/ui/simple/simple_ui_filter.f90	22	public
new_nu_filt3D	subroutine	simple_ui_filter	main/ui/simple/simple_ui_filter.f90	169	public
new_uniform_filter2D	subroutine	simple_ui_filter	main/ui/simple/simple_ui_filter.f90	89	public
new_uniform_filter3D	subroutine	simple_ui_filter	main/ui/simple/simple_ui_filter.f90	127	public
get_ref_ui_param_char	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	54	private
get_ref_ui_param_str	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	77	private
get_ref_ui_program_char	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	122	private
get_ref_ui_program_str	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	144	private
set_ref_ui_param_char	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	31	private
set_ref_ui_param_str	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	43	private
set_ref_ui_program_char	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	100	private
set_ref_ui_program_str	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	111	private
test_ui_hash	subroutine	simple_ui_hash	main/ui/simple_ui_hash.f90	167	public
construct_image_programs	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	18	public
new_binarize	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	30	public
new_convert	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	72	public
new_ctf_correct	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	110	public
new_ctfops	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	147	public
new_normalize	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	191	public
new_scale	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	233	public
new_stack	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	291	public
new_stackops	subroutine	simple_ui_image	main/ui/simple/simple_ui_image.f90	327	public
construct_mask_programs	subroutine	simple_ui_mask	main/ui/simple/simple_ui_mask.f90	13	public
new_auto_spher_mask	subroutine	simple_ui_mask	main/ui/simple/simple_ui_mask.f90	20	public
new_automask2D	subroutine	simple_ui_mask	main/ui/simple/simple_ui_mask.f90	53	public
new_mask	subroutine	simple_ui_mask	main/ui/simple/simple_ui_mask.f90	101	public
construct_ori_programs	subroutine	simple_ui_ori	main/ui/simple/simple_ui_ori.f90	14	public
new_make_oris	subroutine	simple_ui_ori	main/ui/simple/simple_ui_ori.f90	22	public
new_oriops	subroutine	simple_ui_ori	main/ui/simple/simple_ui_ori.f90	75	public
new_oristats	subroutine	simple_ui_ori	main/ui/simple/simple_ui_ori.f90	153	public
new_vizoris	subroutine	simple_ui_ori	main/ui/simple/simple_ui_ori.f90	205	public
construct_other_programs	subroutine	simple_ui_other	main/ui/simple/simple_ui_other.f90	14	public
new_cif2pdb	subroutine	simple_ui_other	main/ui/simple/simple_ui_other.f90	22	public
new_fractionate_movies	subroutine	simple_ui_other	main/ui/simple/simple_ui_other.f90	49	public
new_split_	subroutine	simple_ui_other	main/ui/simple/simple_ui_other.f90	91	public
new_split_stack	subroutine	simple_ui_other	main/ui/simple/simple_ui_other.f90	121	public
finalize	subroutine	simple_ui_param	main/ui/simple_ui_param.f90	386	public
infer_units	function	simple_ui_param	main/ui/simple_ui_param.f90	347	public
normalize_numeric_example	function	simple_ui_param	main/ui/simple_ui_param.f90	336	public
set_choices	subroutine	simple_ui_param	main/ui/simple_ui_param.f90	80	public
set_generated_default	subroutine	simple_ui_param	main/ui/simple_ui_param.f90	128	public
set_param_1	subroutine	simple_ui_param	main/ui/simple_ui_param.f90	40	public
set_param_2	subroutine	simple_ui_param	main/ui/simple_ui_param.f90	57	public
set_placeholder	subroutine	simple_ui_param	main/ui/simple_ui_param.f90	95	public
standardize_placeholder	function	simple_ui_param	main/ui/simple_ui_param.f90	174	public
set_ui_params	subroutine	simple_ui_params_common	main/ui/simple_ui_params_common.f90	183	public
construct_preproc_programs	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	19	public
new_assign_optics_groups	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	32	public
new_ctf_estimate	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	74	public
new_extract	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	125	public
new_gen_pspecs_and_thumbs	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	162	public
new_motion_correct	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	195	public
new_particle_sieving	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	268	public
new_pick	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	331	public
new_preprocess	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	391	public
new_reextract	subroutine	simple_ui_preproc	main/ui/simple/simple_ui_preproc.f90	485	public
construct_print_programs	subroutine	simple_ui_print	main/ui/simple/simple_ui_print.f90	15	public
new_info_image	subroutine	simple_ui_print	main/ui/simple/simple_ui_print.f90	24	public
new_info_stktab	subroutine	simple_ui_print	main/ui/simple/simple_ui_print.f90	60	public
new_print_dose_weights	subroutine	simple_ui_print	main/ui/simple/simple_ui_print.f90	92	public
new_print_fsc	subroutine	simple_ui_print	main/ui/simple/simple_ui_print.f90	130	public
new_print_magic_boxes	subroutine	simple_ui_print	main/ui/simple/simple_ui_print.f90	167	public
add_input_num	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	149	public
add_input_param	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	189	public
add_input_str	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	169	public
add_program_groups_json	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	418	public
add_program_input_json	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	437	public
add_program_requirements_json	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	934	public
add_requirement	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	303	public
append_input	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	287	public
append_required_keys_from_list	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	1129	public
apply_generated_default	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	221	public
bind_input	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	255	public
cardinality_text	function	simple_ui_program	main/ui/simple_ui_program.f90	1097	public
create_json_entry	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	612	public
create_section_from_list	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	904	public
find_input_text	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	1069	public
get_category	function	simple_ui_program	main/ui/simple_ui_program.f90	654	public
get_display_name	function	simple_ui_program	main/ui/simple_ui_program.f90	660	public
get_executable	function	simple_ui_program	main/ui/simple_ui_program.f90	666	public
get_name	function	simple_ui_program	main/ui/simple_ui_program.f90	648	public
get_required_keys	function	simple_ui_program	main/ui/simple_ui_program.f90	700	public
group_label	function	simple_ui_program	main/ui/simple_ui_program.f90	397	public
input_text_for_key	function	simple_ui_program	main/ui/simple_ui_program.f90	1052	public
kill	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	725	public
new	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	113	public
print_cmdline	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	543	public
print_help	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	591	public
print_param_hash	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	793	public
print_param_list	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	752	public
print_requirement_groups	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	961	public
print_requirement_inputs	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	1038	public
print_ui	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	489	public
register_group	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	369	public
set_category	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	672	public
ui_activation_equals_any	function	simple_ui_program	main/ui/simple_ui_program.f90	234	public
ui_cli_param_choices	function	simple_ui_program	main/ui/simple_ui_program.f90	865	public
ui_cli_param_summary	function	simple_ui_program	main/ui/simple_ui_program.f90	887	public
write2json	subroutine	simple_ui_program	main/ui/simple_ui_program.f90	596	public
construct_project_programs	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	32	public
new_export_manifoldem_starproject	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	126	public
new_export_relion	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	58	public
new_export_starproject	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	99	public
new_extract_subproj	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	155	public
new_import_boxes	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	193	public
new_import_cavgs	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	224	public
new_import_movies	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	244	public
new_import_particles	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	292	public
new_import_starproject	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	378	public
new_merge_projects	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	411	public
new_new_project	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	518	public
new_print_project_field	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	578	public
new_print_project_info	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	617	public
new_prune_project	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	645	public
new_ptcl3D_state_consensus	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	446	public
new_reimport_particles	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	359	public
new_replace_project_field	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	675	public
new_selection	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	708	public
new_update_project	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	776	public
new_validate_projfile	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	488	public
new_write_mic_filetab	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	853	public
new_zero_project_shifts	subroutine	simple_ui_project	main/ui/simple/simple_ui_project.f90	825	public
construct_refine3D_programs	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	17	public
new_automask	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	28	public
new_bootstrap_rec3D	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	168	public
new_postprocess	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	74	public
new_reconstruct3D	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	119	public
new_refine3D	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	215	public
new_refine3D_auto	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	315	public
new_refine3D_multi	subroutine	simple_ui_refine3D	main/ui/simple/simple_ui_refine3D.f90	388	public
construct_res_programs	subroutine	simple_ui_res	main/ui/simple/simple_ui_res.f90	12	public
new_fsc	subroutine	simple_ui_res	main/ui/simple/simple_ui_res.f90	18	public
new_fsc_area_score	subroutine	simple_ui_res	main/ui/simple/simple_ui_res.f90	58	public
construct_sim_programs	subroutine	simple_ui_sim	main/ui/simple/simple_ui_sim.f90	15	public
new_cif2mrc	subroutine	simple_ui_sim	main/ui/simple/simple_ui_sim.f90	24	public
new_pdb2mrc	subroutine	simple_ui_sim	main/ui/simple/simple_ui_sim.f90	51	public
new_simulate_movie	subroutine	simple_ui_sim	main/ui/simple/simple_ui_sim.f90	86	public
new_simulate_noise	subroutine	simple_ui_sim	main/ui/simple/simple_ui_sim.f90	140	public
new_simulate_particles	subroutine	simple_ui_sim	main/ui/simple/simple_ui_sim.f90	172	public
add_simple_programs	subroutine	simple_ui_simple_group	main/ui/simple_ui_simple_group.f90	32	public
add_single_programs	subroutine	simple_ui_single_group	main/ui/simple_ui_single_group.f90	18	public
construct_stream_programs	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	17	public
new_abinitio2D_stream	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	28	public
new_assign_optics	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	72	public
new_gen_pickrefs	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	102	public
new_master	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	151	public
new_pick_extract	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	203	public
new_preproc	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	266	public
new_sieve_cavgs	subroutine	simple_ui_stream	main/ui/simple/simple_ui_stream.f90	366	public
add_stream_programs	subroutine	simple_ui_stream_group	main/ui/simple_ui_stream_group.f90	12	public
construct_symmetry_programs	subroutine	simple_ui_sym	main/ui/simple/simple_ui_sym.f90	13	public
new_symaxis_search	subroutine	simple_ui_sym	main/ui/simple/simple_ui_sym.f90	20	public
new_symmetrize_map	subroutine	simple_ui_sym	main/ui/simple/simple_ui_sym.f90	68	public
new_symmetry_test	subroutine	simple_ui_sym	main/ui/simple/simple_ui_sym.f90	117	public
add_test_programs	subroutine	simple_ui_test_group	main/ui/simple_ui_test_group.f90	24	public
add_ui_program	subroutine	simple_ui_utils	main/ui/simple_ui_utils.f90	11	public
construct_validate_programs	subroutine	simple_ui_validate	main/ui/simple/simple_ui_validation.f90	13	public
new_check_refpick	subroutine	simple_ui_validate	main/ui/simple/simple_ui_validation.f90	20	public
new_mini_stream	subroutine	simple_ui_validate	main/ui/simple/simple_ui_validation.f90	87	public
new_model_validate	subroutine	simple_ui_validate	main/ui/simple/simple_ui_validation.f90	151	public
ui_visibility_name	function	simple_ui_visibility	main/ui/simple_ui_visibility.f90	22	public
construct_volume_programs	subroutine	simple_ui_volume	main/ui/simple/simple_ui_volume.f90	14	public
new_center	subroutine	simple_ui_volume	main/ui/simple/simple_ui_volume.f90	22	public
new_reconstruct3D_pcg	subroutine	simple_ui_volume	main/ui/simple/simple_ui_volume.f90	179	public
new_reproject	subroutine	simple_ui_volume	main/ui/simple/simple_ui_volume.f90	63	public
new_volops	subroutine	simple_ui_volume	main/ui/simple/simple_ui_volume.f90	113	public
plan_state_postprocess	subroutine	simple_vol_pproc_policy	main/volume/simple_vol_pproc_policy.f90	42	public
state_mask_is_compatible	subroutine	simple_vol_pproc_policy	main/volume/simple_vol_pproc_policy.f90	81	public
calc_volpair_corrmat	subroutine	simple_volanalyzer	main/volume/simple_volanalyzer.f90	56	public
dock_compare_volumes	subroutine	simple_volanalyzer	main/volume/simple_volanalyzer.f90	87	public
init_volanalyzer	subroutine	simple_volanalyzer	main/volume/simple_volanalyzer.f90	24	public
calc_volcluster_dmat	function	simple_volcluster	main/volume/simple_volcluster.f90	45	public
kill_volumes	subroutine	simple_volcluster	main/volume/simple_volcluster.f90	90	private
read_volcluster_volumes	subroutine	simple_volcluster	main/volume/simple_volcluster.f90	14	public
write_volcluster_report	subroutine	simple_volcluster	main/volume/simple_volcluster.f90	69	public
corr_1	function	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	205	private
corr_2	function	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	215	private
corr_mag	function	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	195	private
extract_ref	subroutine	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	149	private
extract_target_1	subroutine	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	162	private
extract_target_2	subroutine	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	178	private
get_kfromto	function	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	139	private
get_nspace	function	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	127	private
get_nspace_nonred	function	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	133	private
kill	subroutine	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	226	private
new	subroutine	simple_volpft_corrcalc	main/volume/simple_volpft_corrcalc.f90	49	private
volpft_srch4symaxis	subroutine	simple_volpft_symsrch	main/volume/simple_volpft_symsrch.f90	87	public
volpft_symsrch_costfun	function	simple_volpft_symsrch	main/volume/simple_volpft_symsrch.f90	169	private
volpft_symsrch_init	subroutine	simple_volpft_symsrch	main/volume/simple_volpft_symsrch.f90	33	public
volpft_symsrch_kill	subroutine	simple_volpft_symsrch	main/volume/simple_volpft_symsrch.f90	206	private
volpft_symsrch_scorefun	function	simple_volpft_symsrch	main/volume/simple_volpft_symsrch.f90	178	private
clear	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	163	private
del_char	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	330	private
del_str	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	351	private
destroy	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	181	private
finalize_node	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	92	private
find_node	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	125	private
get_ref_char	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	286	private
get_ref_str	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	306	private
init	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	144	private
keys	function	simple_vrefhash	utils/structs/simple_vrefhash.f90	376	private
keys_sorted	function	simple_vrefhash	utils/structs/simple_vrefhash.f90	401	private
set_ref_char	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	234	private
set_ref_str	subroutine	simple_vrefhash	utils/structs/simple_vrefhash.f90	259	private
inc	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	23	private
run_all_vrefhash_tests	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	29	public
test_collision_sanity_many_keys	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	262	private
test_delete	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	224	private
test_init_clear_destroy_and_count	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	46	private
test_keys_returns_all_keys	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	296	private
test_keys_sorted_returns_sorted_keys	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	324	private
test_missing_key_get_ref_returns_null	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	248	private
test_reference_semantics_updates_visible	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	103	private
test_replace_pointer_on_same_key	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	131	private
test_set_get_has_key_with_char_and_string_keys	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	67	private
test_store_multiple_dynamic_types	subroutine	simple_vrefhash_tester	utils/structs/simple_vrefhash_tester.f90	175	private
ifun	function	simple_winfuns	main/interp/simple_winfuns.f90	51	private
wfun	function	simple_winfuns	main/interp/simple_winfuns.f90	41	private
exec_cavgseoproc_nano	subroutine	single_commanders_experimental	main/commanders/single/single_commanders_experimental.f90	162	public
exec_cavgsproc_nano	subroutine	single_commanders_experimental	main/commanders/single/single_commanders_experimental.f90	40	public
exec_ptclsproc_nano	subroutine	single_commanders_experimental	main/commanders/single/single_commanders_experimental.f90	231	public
exec_trajectory_make_projavgs	subroutine	single_commanders_experimental	main/commanders/single/single_commanders_experimental.f90	360	public
exec_tsegmaps_core_finder	subroutine	single_commanders_experimental	main/commanders/single/single_commanders_experimental.f90	288	public
exec_validate_cavgs_vs_model	subroutine	single_commanders_experimental	main/commanders/single/single_commanders_experimental.f90	507	public
exec_analysis2D_nano	subroutine	single_commanders_nano2D	main/commanders/single/single_commanders_nano2D.f90	146	public
exec_center2D_nano	subroutine	single_commanders_nano2D	main/commanders/single/single_commanders_nano2D.f90	26	public
exec_cluster2D_nano	subroutine	single_commanders_nano2D	main/commanders/single/single_commanders_nano2D.f90	97	public
exec_abinitio3D_nano	subroutine	single_commanders_nano3D	main/commanders/single/single_commanders_nano3D.f90	39	public
exec_autorefine3D_nano	subroutine	single_commanders_nano3D	main/commanders/single/single_commanders_nano3D.f90	56	public
exec_commander_trajectory_reconstruct3D_distr	subroutine	single_commanders_nano3D	main/commanders/single/single_commanders_nano3D.f90	306	public
exec_refine3D_nano	subroutine	single_commanders_nano3D	main/commanders/single/single_commanders_nano3D.f90	278	public
exec_extract_substk	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	421	public
exec_graphene_subtr	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	248	public
exec_import_trajectory	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	338	public
exec_track_particles	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	123	public
exec_track_particles_distr	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	49	public
exec_trajectory_backgr_subtr	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	189	public
exec_trajectory_denoise	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	371	public
exec_trajectory_swap_stack	subroutine	single_commanders_trajectory	main/commanders/single/single_commanders_trajectory.f90	385	public
downscale_frames	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	300	public
exec_tseries_extractor	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	355	public
exec_tseries_import	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	39	public
exec_tseries_make_pickavg	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	372	public
exec_tseries_motion_correct	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	119	public
exec_tseries_motion_correct_distr	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	72	public
exec_tseries_prep4tracking	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	209	public
find_outliers	subroutine	single_commanders_tseries	main/commanders/single/single_commanders_tseries.f90	318	public
exec_atom_commander	subroutine	single_exec_atom	main/exec/single_exec_atom.f90	22	public
exec_map_commander	subroutine	single_exec_map	main/exec/single_exec_map.f90	15	public
exec_nano2D_commander	subroutine	single_exec_nano2D	main/exec/single_exec_nano2D.f90	17	public
exec_nano3D_commander	subroutine	single_exec_nano3D	main/exec/single_exec_nano3D.f90	17	public
exec_trajectory_commander	subroutine	single_exec_trajectory	main/exec/single_exec_trajectory.f90	22	public
exec_tseries_commander	subroutine	single_exec_tseries	main/exec/single_exec_tseries.f90	20	public
exec_validate_commander	subroutine	single_exec_validate	main/exec/single_exec_validate.f90	16	public
build_mapping	subroutine	single_tseries_extractor	main/nano/single_tseries_extractor.f90	169	private
extract_trajectory	subroutine	single_tseries_extractor	main/nano/single_tseries_extractor.f90	73	public
identify_neighbours	subroutine	single_tseries_extractor	main/nano/single_tseries_extractor.f90	227	private
init_trajectory_extractor	subroutine	single_tseries_extractor	main/nano/single_tseries_extractor.f90	28	public
kill_trajectory_extractor	subroutine	single_tseries_extractor	main/nano/single_tseries_extractor.f90	256	public
update_background_pspec	subroutine	single_tseries_extractor	main/nano/single_tseries_extractor.f90	200	private
center_reference	function	single_tseries_tracker	main/nano/single_tseries_tracker.f90	366	private
cleanup_centering_images	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	441	private
identify_neighbours	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	335	private
init_tracker	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	37	public
kill_tracker	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	465	public
track_particle	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	102	public
update_background_pspec	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	308	private
write_tester_dump	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	289	private
write_trajectory	subroutine	single_tseries_tracker	main/nano/single_tseries_tracker.f90	264	private
construct_single_atom_programs	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	17	public
new_atoms_register	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	28	public
new_atoms_rmsd	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	56	public
new_atoms_stats	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	90	public
new_core_atoms_analysis	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	135	public
new_crys_score	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	169	public
new_detect_atoms	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	203	public
new_simulate_nanoparticle	subroutine	single_ui_atom	main/ui/single/single_ui_atom.f90	237	public
construct_single_map_programs	subroutine	single_ui_map	main/ui/single/single_ui_map.f90	12	public
new_conv_atom_denoise	subroutine	single_ui_map	main/ui/single/single_ui_map.f90	18	public
new_tsegmaps_core_finder	subroutine	single_ui_map	main/ui/single/single_ui_map.f90	54	public
construct_single_nano2D_programs	subroutine	single_ui_nano2D	main/ui/single/single_ui_nano2D.f90	14	public
new_analysis2D_nano	subroutine	single_ui_nano2D	main/ui/single/single_ui_nano2D.f90	22	public
new_center2D_nano	subroutine	single_ui_nano2D	main/ui/single/single_ui_nano2D.f90	55	public
new_cluster2D_nano	subroutine	single_ui_nano2D	main/ui/single/single_ui_nano2D.f90	94	public
new_estimate_diam	subroutine	single_ui_nano2D	main/ui/single/single_ui_nano2D.f90	151	public
construct_single_nano3D_programs	subroutine	single_ui_nano3D	main/ui/single/single_ui_nano3D.f90	13	public
new_abinitio3D_nano	subroutine	single_ui_nano3D	main/ui/single/single_ui_nano3D.f90	20	public
new_autorefine3D_nano	subroutine	single_ui_nano3D	main/ui/single/single_ui_nano3D.f90	56	public
new_refine3D_nano	subroutine	single_ui_nano3D	main/ui/single/single_ui_nano3D.f90	120	public
construct_single_trajectory_programs	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	17	public
new_extract_substk	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	28	public
new_graphene_subtr	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	63	public
new_import_trajectory	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	99	public
new_trajectory_denoise	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	131	public
new_trajectory_make_projavgs	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	189	public
new_trajectory_reconstruct3D	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	223	public
new_trajectory_swap_stack	subroutine	single_ui_trajectory	main/ui/single/single_ui_trajectory.f90	313	public
construct_single_tseries_programs	subroutine	single_ui_tseries	main/ui/single/single_ui_tseries.f90	16	public
new_track_particles	subroutine	single_ui_tseries	main/ui/single/single_ui_tseries.f90	26	public
new_tseries_extractor	subroutine	single_ui_tseries	main/ui/single/single_ui_tseries.f90	255	public
new_tseries_import	subroutine	single_ui_tseries	main/ui/single/single_ui_tseries.f90	87	public
new_tseries_make_pickavg	subroutine	single_ui_tseries	main/ui/single/single_ui_tseries.f90	123	public
new_tseries_motion_correct	subroutine	single_ui_tseries	main/ui/single/single_ui_tseries.f90	174	public
new_tseries_prep4tracking	subroutine	single_ui_tseries	main/ui/single/single_ui_tseries.f90	226	public
construct_single_validate_programs	subroutine	single_ui_validate	main/ui/single/single_ui_validate.f90	14	public
new_cavgseoproc_nano	subroutine	single_ui_validate	main/ui/single/single_ui_validate.f90	22	public
new_cavgsproc_nano	subroutine	single_ui_validate	main/ui/single/single_ui_validate.f90	57	public
new_ptclsproc_nano	subroutine	single_ui_validate	main/ui/single/single_ui_validate.f90	92	public
new_validate_cavgs_vs_model	subroutine	single_ui_validate	main/ui/single/single_ui_validate.f90	125	public
add_edge	subroutine	subroutine	main/image/simple_image_ops.f90	537	public
add_fsc	subroutine	subroutine	main/project/simple_sp_project_io.f90	649	public
add_oriplot	subroutine	subroutine	main/project/simple_sp_project_io.f90	711	public
append_and_thin_nu_highres_candidate	subroutine	subroutine	main/nu_filt/simple_nu_filter_extend.f90	324	public
apply_dose_weighing	subroutine	subroutine	main/image/simple_image_ops.f90	663	public
assert_polarize_pdim	subroutine	subroutine	main/pftc/simple_polarft_core.f90	297	public
cache_nu_extension_frontier_dmats	subroutine	subroutine	main/nu_filt/simple_nu_filter_bank.f90	201	public
cache_nu_highres_extension_frontier_after_selection	subroutine	subroutine	main/nu_filt/simple_nu_filter_extend.f90	701	public
calc_class_center_shift	subroutine	subroutine	main/class/simple_classaverager_restore.f90	186	public
calc_final_rec	subroutine	subroutine	main/simple_abinitio_utils.f90	657	public
calc_lplim_final_stage	function	subroutine	main/simple_abinitio_utils.f90	365	public
calc_rec	subroutine	subroutine	main/simple_abinitio_utils.f90	510	public
calculate_histogram	subroutine	subroutine	main/project/simple_sp_project_io.f90	533	public
calculate_indices	subroutine	subroutine	main/project/simple_sp_project_io.f90	616	public
calculate_optics_plot	subroutine	subroutine	main/project/simple_sp_project_io.f90	586	public
calculate_plot	subroutine	subroutine	main/project/simple_sp_project_io.f90	559	public
cavger_update_sums	subroutine	subroutine	main/class/simple_classaverager_restore.f90	273	public
check_file_formats	subroutine	subroutine	main/params/simple_parameters_phases.f90	427	public
check_vol	subroutine	subroutine	main/params/simple_parameters_phases.f90	375	public
clear_polar_memo	subroutine	subroutine	main/image/simple_image_polar.f90	185	public
collect_nu_base_label_voxels	subroutine	subroutine	main/nu_filt/simple_nu_filter_extend.f90	612	public
compact_nu_highres_dmat_bank_for_capacity	subroutine	subroutine	main/nu_filt/simple_nu_filter_extend.f90	474	public
dealloc_cavgs	subroutine	subroutine	main/class/simple_classaverager_restore.f90	744	public
double_check_file_formats	subroutine	subroutine	main/params/simple_parameters_phases.f90	440	public
dt_1d	subroutine	subroutine	main/image/simple_image_seg.f90	164	public
ensure_phase_shift_fields	subroutine	subroutine	main/project/simple_sp_project_io.f90	1107	public
exec_refine3D	subroutine	subroutine	main/simple_abinitio_utils.f90	399	public
fill_nu_frontier_dmat_from_bank	subroutine	subroutine	main/nu_filt/simple_nu_filter_extend.f90	637	public
gen_c1	subroutine	subroutine	main/ori/simple_oris_stats.f90	168	public
gen_euclid_crvec	subroutine	subroutine	main/pftc/simple_polarft_corr.f90	572	public
gen_euclid_residual_grad	subroutine	subroutine	main/pftc/simple_polarft_corr.f90	1493	public
gen_hybrid_grad_for_rot_8_local	subroutine	subroutine	main/pftc/simple_polarft_corr.f90	1352	public
gen_many2many_euclids_cufft_kernel	subroutine	subroutine	main/pftc/simple_polarft_corr.f90	2233	public
gen_ortho_reprojs4viz	subroutine	subroutine	main/simple_abinitio_utils.f90	625	public
generate_random_volumes	subroutine	subroutine	main/simple_abinitio_utils.f90	857	public
get_projections	subroutine	subroutine	main/project/simple_sp_project_io.f90	779	public
init_gridcorr_mats	subroutine	subroutine	main/image/simple_image_ops.f90	616	public
inject_refine3D_volume	subroutine	subroutine	main/simple_abinitio_utils.f90	205	public
loc_var_masked	subroutine	subroutine	main/image/simple_image_calc.f90	228	public
log_nu_aux_replacement_margin_stats	subroutine	subroutine	main/nu_filt/simple_nu_filter_bank.f90	277	public
log_nu_objective_smoothing_bank	subroutine	subroutine	main/nu_filt/simple_nu_filter_bank.f90	329	public
memo_ptcls_alloc_error	subroutine	subroutine	main/pftc/simple_polarft_memo.f90	320	public
memoize_polar_point	subroutine	subroutine	main/image/simple_image_polar.f90	197	public
mkfnames	subroutine	subroutine	main/params/simple_parameters_phases.f90	458	public
normalize_input_volumes	subroutine	subroutine	main/simple_abinitio_utils.f90	898	public
normalized_masked_value	subroutine	subroutine	main/image/simple_image_fft.f90	630	public
open_pft_or_ctf2_array_for_write	subroutine	subroutine	main/pftc/simple_polarft_ops_io.f90	88	public
pack_nu_dmat_to_mask_vector	subroutine	subroutine	main/nu_filt/simple_nu_filter_extend.f90	579	public
prep_class_command_lines	subroutine	subroutine	main/simple_abinitio_utils.f90	133	public
prep_final_rec_cline	subroutine	subroutine	main/simple_abinitio_utils.f90	781	public
prepare_nu_smooth_norm	subroutine	subroutine	main/nu_filt/simple_nu_filter_state.f90	302	public
print_states	subroutine	subroutine	main/simple_abinitio_utils.f90	926	public
prune_nu_highres_extension_bank	subroutine	subroutine	main/nu_filt/simple_nu_filter_extend.f90	722	public
randomize_states	subroutine	subroutine	main/simple_abinitio_utils.f90	589	public
read_cavgs	subroutine	subroutine	main/class/simple_classaverager_restore.f90	525	public
read_masks	subroutine	subroutine	main/params/simple_parameters_phases.f90	409	public
register_stage_volume	subroutine	subroutine	main/simple_abinitio_utils.f90	217	public
require_valid_stats_mask	subroutine	subroutine	main/nu_filt/simple_nu_filter_stats.f90	413	public
reset_mats	subroutine	subroutine	main/image/simple_image_access.f90	276	public
set_action	subroutine	subroutine	main/image/simple_image_access.f90	515	public
set_boxcoords	subroutine	subroutine	main/project/simple_sp_project_ptcl.f90	737	public
set_face_indices	subroutine	subroutine	main/image/simple_image_ops.f90	530	public
set_indstk_from_range	subroutine	subroutine	main/project/simple_sp_project_ptcl.f90	89	public
set_ldim_box_from_stk	subroutine	subroutine	main/params/simple_parameters_phases.f90	463	public
set_lplims_from_frcs	subroutine	subroutine	main/simple_abinitio_utils.f90	309	public
set_lplims_from_input	subroutine	subroutine	main/simple_abinitio_utils.f90	380	public
set_symmetry_class_vars	subroutine	subroutine	main/simple_abinitio_utils.f90	286	public
shift_stack_slice2D	subroutine	subroutine	main/class/simple_classaverager_restore.f90	215	public
sort_oris	function	subroutine	main/project/simple_sp_project_io.f90	764	public
strip_refine3D_planning_keys	subroutine	subroutine	main/simple_abinitio_utils.f90	187	public
symmetrize	subroutine	subroutine	main/simple_abinitio_utils.f90	427	public
write_abinitio_lowpass_snapshot	subroutine	subroutine	main/simple_abinitio_utils.f90	246	public
write_final_rec_outputs	subroutine	subroutine	main/simple_abinitio_utils.f90	820	public
c_closedir	function	unix_dirent	extlibs/unix/src/unix_dirent.F90	52	public
c_opendir	function	unix_dirent	extlibs/unix/src/unix_dirent.F90	60	public
c_readdir	function	unix_dirent	extlibs/unix/src/unix_dirent.F90	68	public
c_errno	function	unix_errno	extlibs/unix/src/unix_errno.F90	226	public
c_fcntl	function	unix_fcntl	extlibs/unix/src/unix_fcntl.F90	60	public
c_open	function	unix_fcntl	extlibs/unix/src/unix_fcntl.F90	70	public
c_htonl	function	unix_inet	extlibs/unix/src/unix_inet.F90	17	public
c_htons	function	unix_inet	extlibs/unix/src/unix_inet.F90	25	public
c_inet_addr	function	unix_inet	extlibs/unix/src/unix_inet.F90	33	public
c_ioctl	function	unix_ioctl	extlibs/unix/src/unix_ioctl.F90	15	public
c_ftok	function	unix_ipc	extlibs/unix/src/unix_ipc.F90	25	public
c_mq_close	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	33	public
c_mq_getattr	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	41	public
c_mq_open	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	50	public
c_mq_receive	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	61	public
c_mq_send	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	72	public
c_mq_setattr	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	83	public
c_mq_timedreceive	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	93	public
c_mq_timedsend	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	106	public
c_mq_unlink	function	unix_mqueue	extlibs/unix/src/unix_mqueue.F90	118	public
c_msgctl	function	unix_msg	extlibs/unix/src/unix_msg.F90	18	public
c_msgget	function	unix_msg	extlibs/unix/src/unix_msg.F90	28	public
c_msgrcv	function	unix_msg	extlibs/unix/src/unix_msg.F90	37	public
c_msgsnd	function	unix_msg	extlibs/unix/src/unix_msg.F90	49	public
c_freeaddrinfo	subroutine	unix_netdb	extlibs/unix/src/unix_netdb.F90	130	public
c_gai_strerror	function	unix_netdb	extlibs/unix/src/unix_netdb.F90	111	public
c_getaddrinfo	function	unix_netdb	extlibs/unix/src/unix_netdb.F90	119	public
c_pthread_cancel	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	89	public
c_pthread_create	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	97	public
c_pthread_detach	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	108	public
c_pthread_exit	subroutine	unix_pthread	extlibs/unix/src/unix_pthread.F90	116	public
c_pthread_join	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	123	public
c_pthread_mutex_destroy	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	132	public
c_pthread_mutex_init	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	140	public
c_pthread_mutex_lock	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	149	public
c_pthread_mutex_trylock	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	157	public
c_pthread_mutex_unlock	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	165	public
c_pthread_setcancelstate	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	173	public
c_pthread_setcanceltype	function	unix_pthread	extlibs/unix/src/unix_pthread.F90	182	public
c_regcomp	function	unix_regex	extlibs/unix/src/unix_regex.F90	110	public
c_regerror	function	unix_regex	extlibs/unix/src/unix_regex.F90	120	public
c_regexec	function	unix_regex	extlibs/unix/src/unix_regex.F90	131	public
c_regfree	subroutine	unix_regex	extlibs/unix/src/unix_regex.F90	143	public
c_sem_close	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	41	public
c_sem_destroy	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	49	public
c_sem_getvalue	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	57	public
c_sem_init	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	66	public
c_sem_open	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	75	public
c_sem_post	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	86	public
c_sem_timedwait	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	94	public
c_sem_trywait	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	103	public
c_sem_unlink	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	111	public
c_sem_wait	function	unix_semaphore	extlibs/unix/src/unix_semaphore.F90	119	public
c_kill	function	unix_signal	extlibs/unix/src/unix_signal.F90	90	public
c_signal	function	unix_signal	extlibs/unix/src/unix_signal.F90	99	public
c_accept	function	unix_socket	extlibs/unix/src/unix_socket.F90	56	public
c_bind	function	unix_socket	extlibs/unix/src/unix_socket.F90	66	public
c_connect	function	unix_socket	extlibs/unix/src/unix_socket.F90	76	public
c_listen	function	unix_socket	extlibs/unix/src/unix_socket.F90	86	public
c_send	function	unix_socket	extlibs/unix/src/unix_socket.F90	95	public
c_setsockopt	function	unix_socket	extlibs/unix/src/unix_socket.F90	106	public
c_socket	function	unix_socket	extlibs/unix/src/unix_socket.F90	118	public
c_fstat	function	unix_stat	extlibs/unix/src/unix_stat.F90	146	public
c_lstat	function	unix_stat	extlibs/unix/src/unix_stat.F90	155	public
c_mkdir	function	unix_stat	extlibs/unix/src/unix_stat.F90	164	public
c_mkfifo	function	unix_stat	extlibs/unix/src/unix_stat.F90	173	public
c_stat	function	unix_stat	extlibs/unix/src/unix_stat.F90	182	public
c_umask	function	unix_stat	extlibs/unix/src/unix_stat.F90	191	public
c_fclose	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	51	public
c_fdopen	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	59	public
c_fflush	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	68	public
c_fgetc	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	76	public
c_fgets	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	84	public
c_fopen	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	94	public
c_fprintf	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	103	public
c_fputs	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	113	public
c_fread	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	122	public
c_fwrite	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	133	public
c_getchar	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	34	public
c_getline	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	41	public
c_pclose	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	144	public
c_perror	subroutine	unix_stdio	extlibs/unix/src/unix_stdio.F90	152	public
c_popen	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	159	public
c_putchar	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	168	public
c_scanf	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	176	public
c_setbuf	subroutine	unix_stdio	extlibs/unix/src/unix_stdio.F90	185	public
c_setvbuf	function	unix_stdio	extlibs/unix/src/unix_stdio.F90	193	public
c_exit	subroutine	unix_stdlib	extlibs/unix/src/unix_stdlib.F90	18	public
c_free	subroutine	unix_stdlib	extlibs/unix/src/unix_stdlib.F90	25	public
c_memcpy	function	unix_string	extlibs/unix/src/unix_string.F90	17	public
c_memset	function	unix_string	extlibs/unix/src/unix_string.F90	27	public
c_strerror	function	unix_string	extlibs/unix/src/unix_string.F90	37	public
c_strlen	function	unix_string	extlibs/unix/src/unix_string.F90	45	public
c_closelog	subroutine	unix_syslog	extlibs/unix/src/unix_syslog.F90	53	public
c_openlog	subroutine	unix_syslog	extlibs/unix/src/unix_syslog.F90	57	public
c_syslog	subroutine	unix_syslog	extlibs/unix/src/unix_syslog.F90	66	public
c_cfgetispeed	function	unix_termios	extlibs/unix/src/unix_termios.F90	413	public
c_cfgetospeed	function	unix_termios	extlibs/unix/src/unix_termios.F90	421	public
c_cfmakeraw	subroutine	unix_termios	extlibs/unix/src/unix_termios.F90	429	public
c_cfsetispeed	function	unix_termios	extlibs/unix/src/unix_termios.F90	332	public
c_cfsetospeed	function	unix_termios	extlibs/unix/src/unix_termios.F90	341	public
c_cfsetspeed	function	unix_termios	extlibs/unix/src/unix_termios.F90	350	public
c_tcdrain	function	unix_termios	extlibs/unix/src/unix_termios.F90	359	public
c_tcflow	function	unix_termios	extlibs/unix/src/unix_termios.F90	367	public
c_tcflush	function	unix_termios	extlibs/unix/src/unix_termios.F90	376	public
c_tcgetattr	function	unix_termios	extlibs/unix/src/unix_termios.F90	385	public
c_tcsendbreak	function	unix_termios	extlibs/unix/src/unix_termios.F90	394	public
c_tcsetattr	function	unix_termios	extlibs/unix/src/unix_termios.F90	403	public
c_asctime	function	unix_time	extlibs/unix/src/unix_time.F90	97	public
c_clock_gettime	function	unix_time	extlibs/unix/src/unix_time.F90	105	public
c_ctime	function	unix_time	extlibs/unix/src/unix_time.F90	114	public
c_gettimeofday	function	unix_time	extlibs/unix/src/unix_time.F90	121	public
c_gmtime	function	unix_time	extlibs/unix/src/unix_time.F90	130	public
c_gmtime_r	function	unix_time	extlibs/unix/src/unix_time.F90	138	public
c_localtime	function	unix_time	extlibs/unix/src/unix_time.F90	147	public
c_localtime_r	function	unix_time	extlibs/unix/src/unix_time.F90	155	public
c_mktime	function	unix_time	extlibs/unix/src/unix_time.F90	164	public
c_strftime	function	unix_time	extlibs/unix/src/unix_time.F90	172	public
c_time	function	unix_time	extlibs/unix/src/unix_time.F90	183	public
c_timegm	function	unix_time	extlibs/unix/src/unix_time.F90	191	public
c_chdir	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	31	public
c_close	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	39	public
c_dup	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	47	public
c_dup2	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	55	public
c_execl	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	64	public
c_fork	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	76	public
c_getpid	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	83	public
c_pipe	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	90	public
c_read	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	98	public
c_setsid	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	108	public
c_unlink	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	115	public
c_usleep	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	123	public
c_write	function	unix_unistd	extlibs/unix/src/unix_unistd.F90	131	public
c_uname	function	unix_utsname	extlibs/unix/src/unix_utsname.F90	43	public
c_wait	function	unix_wait	extlibs/unix/src/unix_wait.F90	18	public
c_waitpid	function	unix_wait	extlibs/unix/src/unix_wait.F90	26	public